Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RNU6-34P-201ENST00000364874 107 ntBASIC-0.26□□□□□ -2.45
HOXD3P31249 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.26□□□□□ -2.45
HOXD3P31249 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.26□□□□□ -2.45
HOXD3P31249 MIR601-201ENST00000385256 79 ntBASIC-0.27□□□□□ -2.45
HOXD3P31249 MIR124-2-201ENST00000385081 109 ntBASIC-0.28□□□□□ -2.45
HOXD3P31249 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.28□□□□□ -2.45
HOXD3P31249 MIR6851-201ENST00000617060 67 ntBASIC-0.28□□□□□ -2.45
HOXD3P31249 AL445584.3-201ENST00000617173 78 ntBASIC-0.28□□□□□ -2.45
HOXD3P31249 U6.111-201ENST00000636093 83 ntBASIC-0.28□□□□□ -2.45
HOXD3P31249 SNORA62.4-201ENST00000365504 151 ntBASIC-0.29□□□□□ -2.46
HOXD3P31249 AC005520.4-201ENST00000604337 90 ntBASIC-0.29□□□□□ -2.46
HOXD3P31249 AC093726.3-201ENST00000637588 150 ntBASIC-0.29□□□□□ -2.46
HOXD3P31249 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.3□□□□□ -2.46
HOXD3P31249 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.3□□□□□ -2.46
HOXD3P31249 MIR4320-201ENST00000636981 65 ntBASIC-0.3□□□□□ -2.46
HOXD3P31249 MT-TQ-201ENST00000387372 72 ntBASIC-0.31□□□□□ -2.46
HOXD3P31249 SNORD113-2-201ENST00000391082 72 ntBASIC-0.31□□□□□ -2.46
HOXD3P31249 AL500527.2-201ENST00000454105 95 ntBASIC-0.31□□□□□ -2.46
HOXD3P31249 RNU6-542P-201ENST00000516405 103 ntBASIC-0.31□□□□□ -2.46
HOXD3P31249 SNORD114-14-201ENST00000362723 75 ntBASIC-0.32□□□□□ -2.46
HOXD3P31249 Y_RNA.282-201ENST00000364793 102 ntBASIC-0.32□□□□□ -2.46
HOXD3P31249 MIR587-201ENST00000384845 96 ntBASIC-0.32□□□□□ -2.46
HOXD3P31249 MIR196A1-201ENST00000388006 70 ntBASIC-0.32□□□□□ -2.46
HOXD3P31249 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-0.32□□□□□ -2.46
HOXD3P31249 AC114801.3-201ENST00000510231 177 ntBASIC-0.32□□□□□ -2.46
HOXD3P31249 RNU6-539P-201ENST00000516665 103 ntBASIC-0.32□□□□□ -2.46
HOXD3P31249 SNORA25.4-201ENST00000363666 124 ntBASIC-0.33□□□□□ -2.46
HOXD3P31249 RNU6-800P-201ENST00000384473 103 ntBASIC-0.33□□□□□ -2.46
HOXD3P31249 SNORA3B-201ENST00000391305 131 ntBASIC-0.33□□□□□ -2.46
HOXD3P31249 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.33□□□□□ -2.46
HOXD3P31249 SCARNA17-201ENST00000516183 144 ntBASIC-0.33□□□□□ -2.46
HOXD3P31249 RNU6-246P-201ENST00000384702 107 ntBASIC-0.34□□□□□ -2.46
HOXD3P31249 MIR527-201ENST00000385244 85 ntBASIC-0.34□□□□□ -2.46
HOXD3P31249 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.34□□□□□ -2.46
HOXD3P31249 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 SNORA41B-201ENST00000384785 128 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 MIR204-201ENST00000385200 110 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 RNU6-721P-201ENST00000410155 105 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 SNORD22.1-201ENST00000516331 125 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 MIR198-201ENST00000637333 62 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 MIR518B-201ENST00000385127 83 ntBASIC-0.36□□□□□ -2.47
HOXD3P31249 MIR1207-201ENST00000408249 87 ntBASIC-0.36□□□□□ -2.47
HOXD3P31249 Y_RNA.236-201ENST00000364427 111 ntBASIC-0.37□□□□□ -2.47
HOXD3P31249 Y_RNA.386-201ENST00000383913 105 ntBASIC-0.37□□□□□ -2.47
HOXD3P31249 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.37□□□□□ -2.47
HOXD3P31249 RNU7-88P-201ENST00000458752 63 ntBASIC-0.37□□□□□ -2.47
HOXD3P31249 SNORA13-201ENST00000458790 133 ntBASIC-0.37□□□□□ -2.47
HOXD3P31249 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 SNORD114-25-201ENST00000363742 72 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 SNORD74.6-201ENST00000364796 70 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 RNU6-431P-201ENST00000383874 107 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 RNU6-10P-201ENST00000384036 107 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 RNU6-458P-201ENST00000384179 107 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 SNORD18.2-201ENST00000459604 70 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 U7.5-201ENST00000517224 61 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 MIR4324-201ENST00000584846 72 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 U6.58-201ENST00000613107 107 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 MIR4499-201ENST00000584834 69 ntBASIC-0.39□□□□□ -2.47
HOXD3P31249 MIR6738-201ENST00000619620 64 ntBASIC-0.39□□□□□ -2.47
HOXD3P31249 RNU6-924P-201ENST00000362926 108 ntBASIC-0.4□□□□□ -2.47
HOXD3P31249 MIR3179-1-201ENST00000578940 84 ntBASIC-0.4□□□□□ -2.47
HOXD3P31249 MIR3179-2-201ENST00000579107 84 ntBASIC-0.4□□□□□ -2.47
HOXD3P31249 MIR3179-3-201ENST00000579566 84 ntBASIC-0.4□□□□□ -2.47
HOXD3P31249 MIR4511-201ENST00000582784 87 ntBASIC-0.4□□□□□ -2.47
HOXD3P31249 RNU6-92P-201ENST00000605893 104 ntBASIC-0.4□□□□□ -2.47
HOXD3P31249 MIR3179-4-201ENST00000617599 84 ntBASIC-0.4□□□□□ -2.47
HOXD3P31249 SNORD64-201ENST00000386683 67 ntBASIC-0.41□□□□□ -2.48
HOXD3P31249 SNORD83B-201ENST00000386745 93 ntBASIC-0.41□□□□□ -2.48
HOXD3P31249 RNA5SP461-201ENST00000516451 104 ntBASIC-0.41□□□□□ -2.48
HOXD3P31249 MIR378F-201ENST00000578143 78 ntBASIC-0.41□□□□□ -2.48
HOXD3P31249 RNA5SP192-201ENST00000364404 120 ntBASIC-0.42□□□□□ -2.48
HOXD3P31249 AP000533.3-201ENST00000447704 118 ntBASIC-0.42□□□□□ -2.48
HOXD3P31249 SNORA25.5-201ENST00000363782 126 ntBASIC-0.43□□□□□ -2.48
HOXD3P31249 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.43□□□□□ -2.48
HOXD3P31249 SNORD114-3-201ENST00000364969 75 ntBASIC-0.43□□□□□ -2.48
HOXD3P31249 MIR3115-201ENST00000577915 68 ntBASIC-0.43□□□□□ -2.48
HOXD3P31249 SNORD60.1-201ENST00000362451 73 ntBASIC-0.44□□□□□ -2.48
HOXD3P31249 SNORD116-16-201ENST00000384533 92 ntBASIC-0.44□□□□□ -2.48
HOXD3P31249 MIR147A-201ENST00000385079 72 ntBASIC-0.44□□□□□ -2.48
HOXD3P31249 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.44□□□□□ -2.48
HOXD3P31249 RNU7-134P-201ENST00000458997 64 ntBASIC-0.44□□□□□ -2.48
HOXD3P31249 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.44□□□□□ -2.48
HOXD3P31249 uc_338.19-201ENST00000616808 99 ntBASIC-0.44□□□□□ -2.48
HOXD3P31249 MIR382-201ENST00000637119 76 ntBASIC-0.44□□□□□ -2.48
HOXD3P31249 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.45□□□□□ -2.48
HOXD3P31249 MIR8485-201ENST00000401372 91 ntBASIC-0.45□□□□□ -2.48
HOXD3P31249 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.45□□□□□ -2.48
HOXD3P31249 AC021146.6-201ENST00000514659 117 ntBASIC-0.45□□□□□ -2.48
HOXD3P31249 AC103706.3-201ENST00000636297 85 ntBASIC-0.45□□□□□ -2.48
HOXD3P31249 RNU6-598P-201ENST00000364017 105 ntBASIC-0.46□□□□□ -2.48
HOXD3P31249 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.46□□□□□ -2.48
HOXD3P31249 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.46□□□□□ -2.48
HOXD3P31249 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.47□□□□□ -2.48
HOXD3P31249 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.47□□□□□ -2.48
HOXD3P31249 MIR4306-201ENST00000583390 91 ntBASIC-0.47□□□□□ -2.48
HOXD3P31249 U2.18-201ENST00000622185 84 ntBASIC-0.47□□□□□ -2.48
HOXD3P31249 RNU6-471P-201ENST00000383944 106 ntBASIC-0.48□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 180.3 ms