Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 SNORD116-16-201ENST00000384533 92 ntBASIC-0.15□□□□□ -2.43
HOXD9P28356 MIR214-201ENST00000385214 110 ntBASIC-0.15□□□□□ -2.43
HOXD9P28356 RNU6-721P-201ENST00000410155 105 ntBASIC-0.15□□□□□ -2.43
HOXD9P28356 RNU6-122P-201ENST00000516818 107 ntBASIC-0.15□□□□□ -2.43
HOXD9P28356 MIR3179-1-201ENST00000578940 84 ntBASIC-0.15□□□□□ -2.43
HOXD9P28356 MIR3179-2-201ENST00000579107 84 ntBASIC-0.15□□□□□ -2.43
HOXD9P28356 MIR3179-3-201ENST00000579566 84 ntBASIC-0.15□□□□□ -2.43
HOXD9P28356 MIR3179-4-201ENST00000617599 84 ntBASIC-0.15□□□□□ -2.43
HOXD9P28356 RNU6-940P-201ENST00000363433 104 ntBASIC-0.16□□□□□ -2.44
HOXD9P28356 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.16□□□□□ -2.44
HOXD9P28356 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.16□□□□□ -2.44
HOXD9P28356 MIR429-201ENST00000362106 83 ntBASIC-0.17□□□□□ -2.44
HOXD9P28356 RNU6-810P-201ENST00000364001 107 ntBASIC-0.17□□□□□ -2.44
HOXD9P28356 MIR329-2-201ENST00000385029 84 ntBASIC-0.17□□□□□ -2.44
HOXD9P28356 RNA5SP300-201ENST00000391197 107 ntBASIC-0.17□□□□□ -2.44
HOXD9P28356 SNORA3B-201ENST00000391305 131 ntBASIC-0.17□□□□□ -2.44
HOXD9P28356 AP002795.1-201ENST00000534879 84 ntBASIC-0.17□□□□□ -2.44
HOXD9P28356 MIR4436A-201ENST00000585278 85 ntBASIC-0.17□□□□□ -2.44
HOXD9P28356 RNU6-1312P-201ENST00000362425 108 ntBASIC-0.18□□□□□ -2.44
HOXD9P28356 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.18□□□□□ -2.44
HOXD9P28356 SNORD74.6-201ENST00000364796 70 ntBASIC-0.18□□□□□ -2.44
HOXD9P28356 MIR518B-201ENST00000385127 83 ntBASIC-0.18□□□□□ -2.44
HOXD9P28356 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.18□□□□□ -2.44
HOXD9P28356 RNU7-151P-201ENST00000516930 53 ntBASIC-0.18□□□□□ -2.44
HOXD9P28356 RNU6-924P-201ENST00000362926 108 ntBASIC-0.19□□□□□ -2.44
HOXD9P28356 MIR196A2-201ENST00000385189 110 ntBASIC-0.19□□□□□ -2.44
HOXD9P28356 SNORD75.1-201ENST00000408373 60 ntBASIC-0.19□□□□□ -2.44
HOXD9P28356 RNU6-732P-201ENST00000516033 103 ntBASIC-0.19□□□□□ -2.44
HOXD9P28356 RNU6-231P-201ENST00000517122 103 ntBASIC-0.19□□□□□ -2.44
HOXD9P28356 MIR4645-201ENST00000583158 77 ntBASIC-0.19□□□□□ -2.44
HOXD9P28356 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.2□□□□□ -2.44
HOXD9P28356 SNORD114-25-201ENST00000363742 72 ntBASIC-0.2□□□□□ -2.44
HOXD9P28356 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.2□□□□□ -2.44
HOXD9P28356 SNORD19-201ENST00000391191 68 ntBASIC-0.2□□□□□ -2.44
HOXD9P28356 RNU6-974P-201ENST00000384099 108 ntBASIC-0.21□□□□□ -2.44
HOXD9P28356 MIR507-201ENST00000385234 94 ntBASIC-0.21□□□□□ -2.44
HOXD9P28356 RNU6-696P-201ENST00000390834 107 ntBASIC-0.21□□□□□ -2.44
HOXD9P28356 SNORD63.1-201ENST00000516178 80 ntBASIC-0.21□□□□□ -2.44
HOXD9P28356 RNU6-320P-201ENST00000516511 106 ntBASIC-0.21□□□□□ -2.44
HOXD9P28356 MIR5589-201ENST00000579442 60 ntBASIC-0.21□□□□□ -2.44
HOXD9P28356 MIR8064-201ENST00000612863 90 ntBASIC-0.21□□□□□ -2.44
HOXD9P28356 RNU6-247P-201ENST00000362636 107 ntBASIC-0.22□□□□□ -2.44
HOXD9P28356 RNU6-35P-201ENST00000384530 107 ntBASIC-0.22□□□□□ -2.44
HOXD9P28356 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.22□□□□□ -2.44
HOXD9P28356 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.23□□□□□ -2.45
HOXD9P28356 SNORA13-201ENST00000458790 133 ntBASIC-0.23□□□□□ -2.45
HOXD9P28356 MIR3938-201ENST00000582157 103 ntBASIC-0.23□□□□□ -2.45
HOXD9P28356 MIR7110-201ENST00000612638 86 ntBASIC-0.23□□□□□ -2.45
HOXD9P28356 RNU6-446P-201ENST00000362827 106 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 RNA5SP275-201ENST00000363936 118 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 SNORD113-4-201ENST00000364802 75 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 MIR520D-201ENST00000385002 87 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 RNU6-995P-201ENST00000391244 107 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 RNU6-284P-201ENST00000411105 106 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 SNORD63.2-201ENST00000516303 64 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 MIR3681-201ENST00000580089 72 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 MIR4490-201ENST00000582647 84 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 MIR4493-201ENST00000584016 73 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 AP001180.6-201ENST00000584918 159 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 SNORD114-31-201ENST00000363219 75 ntBASIC-0.25□□□□□ -2.45
HOXD9P28356 RNU6-258P-201ENST00000390884 101 ntBASIC-0.25□□□□□ -2.45
HOXD9P28356 SNORD57-201ENST00000448188 72 ntBASIC-0.25□□□□□ -2.45
HOXD9P28356 SNORD126-201ENST00000459475 77 ntBASIC-0.25□□□□□ -2.45
HOXD9P28356 MIR548AZ-201ENST00000616567 95 ntBASIC-0.25□□□□□ -2.45
HOXD9P28356 MIR5683-201ENST00000636514 76 ntBASIC-0.25□□□□□ -2.45
HOXD9P28356 RNU6-829P-201ENST00000363700 112 ntBASIC-0.26□□□□□ -2.45
HOXD9P28356 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.26□□□□□ -2.45
HOXD9P28356 SNORA40.16-201ENST00000517238 121 ntBASIC-0.26□□□□□ -2.45
HOXD9P28356 MIR3170-201ENST00000582699 77 ntBASIC-0.26□□□□□ -2.45
HOXD9P28356 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-0.26□□□□□ -2.45
HOXD9P28356 MIR7978-201ENST00000636158 59 ntBASIC-0.26□□□□□ -2.45
HOXD9P28356 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.27□□□□□ -2.45
HOXD9P28356 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.27□□□□□ -2.45
HOXD9P28356 MIR548AA1-201ENST00000384971 97 ntBASIC-0.27□□□□□ -2.45
HOXD9P28356 SNORD64-201ENST00000386683 67 ntBASIC-0.27□□□□□ -2.45
HOXD9P28356 RNU6-1111P-201ENST00000391118 107 ntBASIC-0.27□□□□□ -2.45
HOXD9P28356 SNORA26.4-201ENST00000391188 123 ntBASIC-0.27□□□□□ -2.45
HOXD9P28356 RPS29P8-201ENST00000445109 171 ntBASIC-0.27□□□□□ -2.45
HOXD9P28356 AC021146.6-201ENST00000514659 117 ntBASIC-0.27□□□□□ -2.45
HOXD9P28356 MIR101-1-201ENST00000362265 75 ntBASIC-0.28□□□□□ -2.45
HOXD9P28356 Y_RNA.139-201ENST00000363464 102 ntBASIC-0.28□□□□□ -2.45
HOXD9P28356 AL353691.2-201ENST00000443795 59 ntBASIC-0.28□□□□□ -2.45
HOXD9P28356 RNA5SP476-201ENST00000516613 103 ntBASIC-0.28□□□□□ -2.45
HOXD9P28356 IGLVI-20-201ENST00000519296 130 ntBASIC-0.28□□□□□ -2.45
HOXD9P28356 Y_RNA.69-201ENST00000362885 109 ntBASIC-0.29□□□□□ -2.46
HOXD9P28356 SNORD114-28-201ENST00000363610 72 ntBASIC-0.29□□□□□ -2.46
HOXD9P28356 RNU6-431P-201ENST00000383874 107 ntBASIC-0.29□□□□□ -2.46
HOXD9P28356 SNORA40B-201ENST00000385573 128 ntBASIC-0.29□□□□□ -2.46
HOXD9P28356 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-0.3□□□□□ -2.46
HOXD9P28356 AL500527.2-201ENST00000454105 95 ntBASIC-0.3□□□□□ -2.46
HOXD9P28356 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.3□□□□□ -2.46
HOXD9P28356 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.31□□□□□ -2.46
HOXD9P28356 RNU6-499P-201ENST00000365615 107 ntBASIC-0.31□□□□□ -2.46
HOXD9P28356 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.31□□□□□ -2.46
HOXD9P28356 MTND4LP19-201ENST00000403051 166 ntBASIC-0.31□□□□□ -2.46
HOXD9P28356 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.31□□□□□ -2.46
HOXD9P28356 AC079150.2-201ENST00000443733 78 ntBASIC-0.31□□□□□ -2.46
HOXD9P28356 RNU7-134P-201ENST00000458997 64 ntBASIC-0.31□□□□□ -2.46
HOXD9P28356 RNU7-119P-201ENST00000459279 63 ntBASIC-0.31□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 171.3 ms