Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 U7.5-201ENST00000517224 61 ntBASIC-0.78□□□□□ -2.53
MSH3P20585 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.79□□□□□ -2.54
MSH3P20585 Y_RNA.236-201ENST00000364427 111 ntBASIC-0.79□□□□□ -2.54
MSH3P20585 RNU6-540P-201ENST00000384622 101 ntBASIC-0.79□□□□□ -2.54
MSH3P20585 SNORA26.4-201ENST00000391188 123 ntBASIC-0.79□□□□□ -2.54
MSH3P20585 SNORD115-33-201ENST00000363723 82 ntBASIC-0.8□□□□□ -2.54
MSH3P20585 Y_RNA.545-201ENST00000384652 105 ntBASIC-0.8□□□□□ -2.54
MSH3P20585 MIR147A-201ENST00000385079 72 ntBASIC-0.8□□□□□ -2.54
MSH3P20585 MT-TQ-201ENST00000387372 72 ntBASIC-0.8□□□□□ -2.54
MSH3P20585 RNU7-88P-201ENST00000458752 63 ntBASIC-0.8□□□□□ -2.54
MSH3P20585 RNA5SP476-201ENST00000516613 103 ntBASIC-0.8□□□□□ -2.54
MSH3P20585 MIR429-201ENST00000362106 83 ntBASIC-0.81□□□□□ -2.54
MSH3P20585 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.81□□□□□ -2.54
MSH3P20585 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.81□□□□□ -2.54
MSH3P20585 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.81□□□□□ -2.54
MSH3P20585 RNU6-431P-201ENST00000383874 107 ntBASIC-0.82□□□□□ -2.54
MSH3P20585 MIR889-201ENST00000401280 79 ntBASIC-0.82□□□□□ -2.54
MSH3P20585 RNU6-732P-201ENST00000516033 103 ntBASIC-0.82□□□□□ -2.54
MSH3P20585 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.82□□□□□ -2.54
MSH3P20585 RNU6-663P-201ENST00000391105 106 ntBASIC-0.83□□□□□ -2.54
MSH3P20585 RNU6-871P-201ENST00000516122 100 ntBASIC-0.83□□□□□ -2.54
MSH3P20585 SNORD63.1-201ENST00000516178 80 ntBASIC-0.83□□□□□ -2.54
MSH3P20585 RNU6-542P-201ENST00000516405 103 ntBASIC-0.83□□□□□ -2.54
MSH3P20585 Y_RNA.443-201ENST00000384135 111 ntBASIC-0.84□□□□□ -2.54
MSH3P20585 SNORD116-16-201ENST00000384533 92 ntBASIC-0.84□□□□□ -2.54
MSH3P20585 RNU6-30P-201ENST00000384561 107 ntBASIC-0.84□□□□□ -2.54
MSH3P20585 SNORA72.7-201ENST00000516349 94 ntBASIC-0.84□□□□□ -2.54
MSH3P20585 MIR4662A-201ENST00000637499 67 ntBASIC-0.84□□□□□ -2.54
MSH3P20585 SNORD64-201ENST00000386683 67 ntBASIC-0.85□□□□□ -2.55
MSH3P20585 RNU6-696P-201ENST00000390834 107 ntBASIC-0.85□□□□□ -2.55
MSH3P20585 HAR1A.1-201ENST00000459583 118 ntBASIC-0.85□□□□□ -2.55
MSH3P20585 SNORD114-25-201ENST00000363742 72 ntBASIC-0.86□□□□□ -2.55
MSH3P20585 SNORA41B-201ENST00000384785 128 ntBASIC-0.86□□□□□ -2.55
MSH3P20585 RNU6-1275P-201ENST00000391087 107 ntBASIC-0.86□□□□□ -2.55
MSH3P20585 RNU6-630P-201ENST00000391258 106 ntBASIC-0.86□□□□□ -2.55
MSH3P20585 RNU6-776P-201ENST00000364403 104 ntBASIC-0.87□□□□□ -2.55
MSH3P20585 RNU6-1022P-201ENST00000365049 104 ntBASIC-0.87□□□□□ -2.55
MSH3P20585 SNORD19-201ENST00000391191 68 ntBASIC-0.87□□□□□ -2.55
MSH3P20585 AL353691.2-201ENST00000443795 59 ntBASIC-0.87□□□□□ -2.55
MSH3P20585 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.87□□□□□ -2.55
MSH3P20585 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.87□□□□□ -2.55
MSH3P20585 RNU6-598P-201ENST00000364017 105 ntBASIC-0.88□□□□□ -2.55
MSH3P20585 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.88□□□□□ -2.55
MSH3P20585 SNORD30.1-201ENST00000391309 70 ntBASIC-0.89□□□□□ -2.55
MSH3P20585 MIR196A1-201ENST00000388006 70 ntBASIC-0.9□□□□□ -2.55
MSH3P20585 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.9□□□□□ -2.55
MSH3P20585 MIR382-201ENST00000637119 76 ntBASIC-0.9□□□□□ -2.55
MSH3P20585 SNORA25.4-201ENST00000363666 124 ntBASIC-0.91□□□□□ -2.56
MSH3P20585 RNU6-649P-201ENST00000384463 107 ntBASIC-0.91□□□□□ -2.56
MSH3P20585 Y_RNA.565-201ENST00000384719 101 ntBASIC-0.91□□□□□ -2.56
MSH3P20585 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-0.91□□□□□ -2.56
MSH3P20585 SNORD57-201ENST00000448188 72 ntBASIC-0.91□□□□□ -2.56
MSH3P20585 RNU6-92P-201ENST00000605893 104 ntBASIC-0.91□□□□□ -2.56
MSH3P20585 RNA5SP67-201ENST00000516422 131 ntBASIC-0.92□□□□□ -2.56
MSH3P20585 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.92□□□□□ -2.56
MSH3P20585 AP002795.1-201ENST00000534879 84 ntBASIC-0.92□□□□□ -2.56
MSH3P20585 RNU6-539P-201ENST00000516665 103 ntBASIC-0.93□□□□□ -2.56
MSH3P20585 U6.111-201ENST00000636093 83 ntBASIC-0.93□□□□□ -2.56
MSH3P20585 AL500527.2-201ENST00000454105 95 ntBASIC-0.94□□□□□ -2.56
MSH3P20585 MIR548AX-201ENST00000580117 73 ntBASIC-0.94□□□□□ -2.56
MSH3P20585 U2.18-201ENST00000622185 84 ntBASIC-0.94□□□□□ -2.56
MSH3P20585 MIR5683-201ENST00000636514 76 ntBASIC-0.94□□□□□ -2.56
MSH3P20585 MIR548Q-201ENST00000408404 100 ntBASIC-0.95□□□□□ -2.56
MSH3P20585 AC005520.4-201ENST00000604337 90 ntBASIC-0.95□□□□□ -2.56
MSH3P20585 snoU83B.1-201ENST00000517136 88 ntBASIC-0.96□□□□□ -2.56
MSH3P20585 SNORD60.1-201ENST00000362451 73 ntBASIC-0.97□□□□□ -2.56
MSH3P20585 SNORD1B-201ENST00000363091 84 ntBASIC-0.97□□□□□ -2.56
MSH3P20585 MIR548AA1-201ENST00000384971 97 ntBASIC-0.99□□□□□ -2.57
MSH3P20585 MIR4490-201ENST00000582647 84 ntBASIC-0.99□□□□□ -2.57
MSH3P20585 SNORD83B-201ENST00000386745 93 ntBASIC-1□□□□□ -2.57
MSH3P20585 SCARNA17-201ENST00000516183 144 ntBASIC-1□□□□□ -2.57
MSH3P20585 MIR4511-201ENST00000582784 87 ntBASIC-1□□□□□ -2.57
MSH3P20585 SNORA25.5-201ENST00000363782 126 ntBASIC-1.01□□□□□ -2.57
MSH3P20585 RNU6-800P-201ENST00000384473 103 ntBASIC-1.01□□□□□ -2.57
MSH3P20585 MIR29B1-201ENST00000385015 81 ntBASIC-1.01□□□□□ -2.57
MSH3P20585 MIR507-201ENST00000385234 94 ntBASIC-1.01□□□□□ -2.57
MSH3P20585 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.01□□□□□ -2.57
MSH3P20585 RNA5SP26-201ENST00000362406 119 ntBASIC-1.02□□□□□ -2.57
MSH3P20585 AC103706.3-201ENST00000636297 85 ntBASIC-1.02□□□□□ -2.57
MSH3P20585 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.03□□□□□ -2.57
MSH3P20585 RNU6-172P-201ENST00000411000 93 ntBASIC-1.04□□□□□ -2.58
MSH3P20585 MIR6818-201ENST00000621576 65 ntBASIC-1.04□□□□□ -2.58
MSH3P20585 RNA5SP192-201ENST00000364404 120 ntBASIC-1.05□□□□□ -2.58
MSH3P20585 RNU6-122P-201ENST00000516818 107 ntBASIC-1.05□□□□□ -2.58
MSH3P20585 RNY1P9-201ENST00000532431 109 ntBASIC-1.05□□□□□ -2.58
MSH3P20585 MIR4499-201ENST00000584834 69 ntBASIC-1.05□□□□□ -2.58
MSH3P20585 RNU6-638P-201ENST00000516582 104 ntBASIC-1.06□□□□□ -2.58
MSH3P20585 RNU7-151P-201ENST00000516930 53 ntBASIC-1.06□□□□□ -2.58
MSH3P20585 MIR3170-201ENST00000582699 77 ntBASIC-1.06□□□□□ -2.58
MSH3P20585 uc_338.19-201ENST00000616808 99 ntBASIC-1.06□□□□□ -2.58
MSH3P20585 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.06□□□□□ -2.58
MSH3P20585 MIR520D-201ENST00000385002 87 ntBASIC-1.07□□□□□ -2.58
MSH3P20585 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.08□□□□□ -2.58
MSH3P20585 RNU6-995P-201ENST00000391244 107 ntBASIC-1.08□□□□□ -2.58
MSH3P20585 MIR4324-201ENST00000584846 72 ntBASIC-1.08□□□□□ -2.58
MSH3P20585 MIR6738-201ENST00000619620 64 ntBASIC-1.08□□□□□ -2.58
MSH3P20585 RPL35AP4-201ENST00000412007 102 ntBASIC-1.09□□□□□ -2.58
MSH3P20585 AC114801.3-201ENST00000510231 177 ntBASIC-1.09□□□□□ -2.58
MSH3P20585 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.1□□□□□ -2.59
MSH3P20585 RNU6-608P-201ENST00000383927 104 ntBASIC-1.1□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 167 ms