Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 SNORD113-2-201ENST00000391082 72 ntBASIC-3.03□□□□□ -2.89
LIMS3P0CW19 Y_RNA.218-201ENST00000364218 104 ntBASIC-3.04□□□□□ -2.9
LIMS3P0CW19 SNORD115-31-201ENST00000365318 82 ntBASIC-3.04□□□□□ -2.9
LIMS3P0CW19 Y_RNA.421-201ENST00000384052 101 ntBASIC-3.04□□□□□ -2.9
LIMS3P0CW19 SNORD19B.1-201ENST00000630615 80 ntBASIC-3.04□□□□□ -2.9
LIMS3P0CW19 RNU6-766P-201ENST00000362478 107 ntBASIC-3.05□□□□□ -2.9
LIMS3P0CW19 Y_RNA.257-201ENST00000364596 102 ntBASIC-3.05□□□□□ -2.9
LIMS3P0CW19 MIR630-201ENST00000384957 97 ntBASIC-3.05□□□□□ -2.9
LIMS3P0CW19 AC074348.1-201ENST00000426503 132 ntBASIC-3.05□□□□□ -2.9
LIMS3P0CW19 MIR4668-201ENST00000582284 70 ntBASIC-3.05□□□□□ -2.9
LIMS3P0CW19 RNA5SP173-201ENST00000364857 136 ntBASIC-3.06□□□□□ -2.9
LIMS3P0CW19 MT-TG-201ENST00000387429 68 ntBASIC-3.06□□□□□ -2.9
LIMS3P0CW19 RNU6-995P-201ENST00000391244 107 ntBASIC-3.06□□□□□ -2.9
LIMS3P0CW19 RNU6-686P-201ENST00000364839 107 ntBASIC-3.07□□□□□ -2.9
LIMS3P0CW19 Y_RNA.290-201ENST00000364879 114 ntBASIC-3.07□□□□□ -2.9
LIMS3P0CW19 snoU13.10-201ENST00000459301 103 ntBASIC-3.07□□□□□ -2.9
LIMS3P0CW19 RNU6-554P-201ENST00000410466 106 ntBASIC-3.09□□□□□ -2.9
LIMS3P0CW19 RNU6-668P-201ENST00000364180 107 ntBASIC-3.1□□□□□ -2.91
LIMS3P0CW19 RNU6-1325P-201ENST00000364905 105 ntBASIC-3.1□□□□□ -2.91
LIMS3P0CW19 RNU6-1306P-201ENST00000365219 99 ntBASIC-3.1□□□□□ -2.91
LIMS3P0CW19 RNY1P5-201ENST00000383890 115 ntBASIC-3.1□□□□□ -2.91
LIMS3P0CW19 RNU6-1081P-201ENST00000384537 107 ntBASIC-3.1□□□□□ -2.91
LIMS3P0CW19 RNU6-1011P-201ENST00000384668 107 ntBASIC-3.1□□□□□ -2.91
LIMS3P0CW19 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-3.1□□□□□ -2.91
LIMS3P0CW19 SNORA27.2-201ENST00000363365 126 ntBASIC-3.11□□□□□ -2.91
LIMS3P0CW19 SNORD116-14-201ENST00000383894 92 ntBASIC-3.11□□□□□ -2.91
LIMS3P0CW19 SNORD116-17-201ENST00000383929 92 ntBASIC-3.11□□□□□ -2.91
LIMS3P0CW19 RNU6-106P-201ENST00000384405 107 ntBASIC-3.11□□□□□ -2.91
LIMS3P0CW19 SNORD116-15-201ENST00000384445 92 ntBASIC-3.11□□□□□ -2.91
LIMS3P0CW19 SNORD116-19-201ENST00000384729 92 ntBASIC-3.11□□□□□ -2.91
LIMS3P0CW19 SNORA19-201ENST00000384737 128 ntBASIC-3.12□□□□□ -2.91
LIMS3P0CW19 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-3.12□□□□□ -2.91
LIMS3P0CW19 FTX_4.1-201ENST00000616291 147 ntBASIC-3.12□□□□□ -2.91
LIMS3P0CW19 RNU6-1094P-201ENST00000362416 104 ntBASIC-3.13□□□□□ -2.91
LIMS3P0CW19 SNORD1B-201ENST00000363091 84 ntBASIC-3.13□□□□□ -2.91
LIMS3P0CW19 Y_RNA.464-201ENST00000384282 110 ntBASIC-3.13□□□□□ -2.91
LIMS3P0CW19 Y_RNA.544-201ENST00000384650 113 ntBASIC-3.13□□□□□ -2.91
LIMS3P0CW19 RNU6-346P-201ENST00000516288 111 ntBASIC-3.13□□□□□ -2.91
LIMS3P0CW19 MIR8053-201ENST00000613344 75 ntBASIC-3.13□□□□□ -2.91
LIMS3P0CW19 Y_RNA.501-201ENST00000384467 103 ntBASIC-3.14□□□□□ -2.91
LIMS3P0CW19 RNU6-129P-201ENST00000391022 107 ntBASIC-3.14□□□□□ -2.91
LIMS3P0CW19 RNY4P18-201ENST00000391107 89 ntBASIC-3.14□□□□□ -2.91
LIMS3P0CW19 Y_RNA.620-201ENST00000411009 88 ntBASIC-3.14□□□□□ -2.91
LIMS3P0CW19 AC013734.1-201ENST00000619329 111 ntBASIC-3.14□□□□□ -2.91
LIMS3P0CW19 MIR1297-201ENST00000637311 77 ntBASIC-3.14□□□□□ -2.91
LIMS3P0CW19 MIRLET7A1-201ENST00000362295 80 ntBASIC-3.15□□□□□ -2.91
LIMS3P0CW19 RNU6-1212P-201ENST00000517023 104 ntBASIC-3.15□□□□□ -2.91
LIMS3P0CW19 MIR2052-201ENST00000636055 55 ntBASIC-3.15□□□□□ -2.91
LIMS3P0CW19 Y_RNA.204-201ENST00000364112 102 ntBASIC-3.16□□□□□ -2.92
LIMS3P0CW19 Y_RNA.506-201ENST00000384494 102 ntBASIC-3.16□□□□□ -2.92
LIMS3P0CW19 SNORD116-22-201ENST00000384430 92 ntBASIC-3.17□□□□□ -2.92
LIMS3P0CW19 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-3.17□□□□□ -2.92
LIMS3P0CW19 SNORA41B-201ENST00000384785 128 ntBASIC-3.18□□□□□ -2.92
LIMS3P0CW19 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-3.18□□□□□ -2.92
LIMS3P0CW19 SNORD63.2-201ENST00000516303 64 ntBASIC-3.18□□□□□ -2.92
LIMS3P0CW19 RNU7-151P-201ENST00000516930 53 ntBASIC-3.18□□□□□ -2.92
LIMS3P0CW19 MTRNR2L9-201ENST00000622562 75 ntBASIC-3.19□□□□□ -2.92
LIMS3P0CW19 Y_RNA.532-201ENST00000384590 113 ntBASIC-3.2□□□□□ -2.92
LIMS3P0CW19 RNU6-380P-201ENST00000410207 107 ntBASIC-3.2□□□□□ -2.92
LIMS3P0CW19 SCARNA15.1-201ENST00000516384 125 ntBASIC-3.2□□□□□ -2.92
LIMS3P0CW19 SNORD113.1-201ENST00000363280 73 ntBASIC-3.21□□□□□ -2.92
LIMS3P0CW19 RNU6-669P-201ENST00000365575 107 ntBASIC-3.21□□□□□ -2.92
LIMS3P0CW19 RNU6-907P-201ENST00000390924 102 ntBASIC-3.21□□□□□ -2.92
LIMS3P0CW19 AC097484.2-201ENST00000509147 251 ntBASIC-3.21□□□□□ -2.92
LIMS3P0CW19 RNU6-1191P-201ENST00000516799 107 ntBASIC-3.21□□□□□ -2.92
LIMS3P0CW19 AC005520.4-201ENST00000604337 90 ntBASIC-3.22□□□□□ -2.92
LIMS3P0CW19 U6.97-201ENST00000636904 101 ntBASIC-3.22□□□□□ -2.92
LIMS3P0CW19 RNU6-694P-201ENST00000364071 147 ntBASIC-3.23□□□□□ -2.93
LIMS3P0CW19 RNU6-402P-201ENST00000410678 103 ntBASIC-3.23□□□□□ -2.93
LIMS3P0CW19 MIR4484-201ENST00000582855 83 ntBASIC-3.23□□□□□ -2.93
LIMS3P0CW19 MIR548BB-201ENST00000626714 66 ntBASIC-3.23□□□□□ -2.93
LIMS3P0CW19 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-3.23□□□□□ -2.93
LIMS3P0CW19 RNY4P9-201ENST00000363194 97 ntBASIC-3.24□□□□□ -2.93
LIMS3P0CW19 RNU6-219P-201ENST00000364728 107 ntBASIC-3.24□□□□□ -2.93
LIMS3P0CW19 Y_RNA.321-201ENST00000365149 102 ntBASIC-3.24□□□□□ -2.93
LIMS3P0CW19 RNU6-497P-201ENST00000365316 104 ntBASIC-3.24□□□□□ -2.93
LIMS3P0CW19 RNY4-201ENST00000516507 96 ntBASIC-3.24□□□□□ -2.93
LIMS3P0CW19 RNU6-755P-201ENST00000364400 103 ntBASIC-3.25□□□□□ -2.93
LIMS3P0CW19 SNORA63.4-201ENST00000362763 126 ntBASIC-3.26□□□□□ -2.93
LIMS3P0CW19 RNU6-255P-201ENST00000516957 105 ntBASIC-3.26□□□□□ -2.93
LIMS3P0CW19 Y_RNA.219-201ENST00000364232 113 ntBASIC-3.27□□□□□ -2.93
LIMS3P0CW19 MIR579-201ENST00000385221 98 ntBASIC-3.27□□□□□ -2.93
LIMS3P0CW19 RNU6-172P-201ENST00000411000 93 ntBASIC-3.27□□□□□ -2.93
LIMS3P0CW19 MIR7978-201ENST00000636158 59 ntBASIC-3.27□□□□□ -2.93
LIMS3P0CW19 Y_RNA.647-201ENST00000459194 112 ntBASIC-3.28□□□□□ -2.93
LIMS3P0CW19 Y_RNA.640-201ENST00000459296 112 ntBASIC-3.28□□□□□ -2.93
LIMS3P0CW19 RNU6-523P-201ENST00000516304 54 ntBASIC-3.28□□□□□ -2.93
LIMS3P0CW19 Y_RNA.803-201ENST00000614432 112 ntBASIC-3.28□□□□□ -2.93
LIMS3P0CW19 Y_RNA.815-201ENST00000616655 112 ntBASIC-3.28□□□□□ -2.93
LIMS3P0CW19 Y_RNA.795-201ENST00000619475 112 ntBASIC-3.28□□□□□ -2.93
LIMS3P0CW19 Y_RNA.827-201ENST00000638104 112 ntBASIC-3.28□□□□□ -2.93
LIMS3P0CW19 SNORD18C-201ENST00000362704 69 ntBASIC-3.29□□□□□ -2.94
LIMS3P0CW19 SNORD45A-201ENST00000384512 84 ntBASIC-3.3□□□□□ -2.94
LIMS3P0CW19 MIR125B1-201ENST00000385236 88 ntBASIC-3.3□□□□□ -2.94
LIMS3P0CW19 Y_RNA.186-201ENST00000363899 92 ntBASIC-3.31□□□□□ -2.94
LIMS3P0CW19 Y_RNA.513-201ENST00000384522 100 ntBASIC-3.31□□□□□ -2.94
LIMS3P0CW19 Y_RNA.611-201ENST00000410682 108 ntBASIC-3.31□□□□□ -2.94
LIMS3P0CW19 RNY3P8-201ENST00000411366 126 ntBASIC-3.31□□□□□ -2.94
LIMS3P0CW19 RNU6-267P-201ENST00000516714 103 ntBASIC-3.31□□□□□ -2.94
LIMS3P0CW19 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-3.32□□□□□ -2.94
Retrieved 100 of 98,524 protein–RNA pairs in 171.7 ms