Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNU6-226P-201ENST00000363778 107 ntBASIC-1.24□□□□□ -2.61
LHX3Q9UBR4 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.24□□□□□ -2.61
LHX3Q9UBR4 RNU7-134P-201ENST00000458997 64 ntBASIC-1.24□□□□□ -2.61
LHX3Q9UBR4 MIR548C-201ENST00000384815 97 ntBASIC-1.25□□□□□ -2.61
LHX3Q9UBR4 RNU6-330P-201ENST00000363015 107 ntBASIC-1.26□□□□□ -2.61
LHX3Q9UBR4 RNU6-755P-201ENST00000364400 103 ntBASIC-1.26□□□□□ -2.61
LHX3Q9UBR4 RNU6-645P-201ENST00000364649 106 ntBASIC-1.26□□□□□ -2.61
LHX3Q9UBR4 SNORD113-1-201ENST00000365321 69 ntBASIC-1.26□□□□□ -2.61
LHX3Q9UBR4 MIR488-201ENST00000365739 83 ntBASIC-1.26□□□□□ -2.61
LHX3Q9UBR4 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.26□□□□□ -2.61
LHX3Q9UBR4 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.26□□□□□ -2.61
LHX3Q9UBR4 AC138207.3-201ENST00000585289 166 ntBASIC-1.26□□□□□ -2.61
LHX3Q9UBR4 U2.7-201ENST00000619197 100 ntBASIC-1.26□□□□□ -2.61
LHX3Q9UBR4 RNU6-32P-201ENST00000383948 107 ntBASIC-1.27□□□□□ -2.61
LHX3Q9UBR4 RNU6-13P-201ENST00000384248 107 ntBASIC-1.27□□□□□ -2.61
LHX3Q9UBR4 RNU6-12P-201ENST00000384604 107 ntBASIC-1.27□□□□□ -2.61
LHX3Q9UBR4 RNU6-41P-201ENST00000384741 107 ntBASIC-1.27□□□□□ -2.61
LHX3Q9UBR4 MIR5591-201ENST00000578248 65 ntBASIC-1.27□□□□□ -2.61
LHX3Q9UBR4 MIR3675-201ENST00000583661 73 ntBASIC-1.27□□□□□ -2.61
LHX3Q9UBR4 RNU6-497P-201ENST00000365316 104 ntBASIC-1.28□□□□□ -2.61
LHX3Q9UBR4 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.28□□□□□ -2.61
LHX3Q9UBR4 SNORA26.4-201ENST00000391188 123 ntBASIC-1.28□□□□□ -2.61
LHX3Q9UBR4 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.28□□□□□ -2.61
LHX3Q9UBR4 SNORD63.1-201ENST00000516178 80 ntBASIC-1.28□□□□□ -2.61
LHX3Q9UBR4 RNU6-557P-201ENST00000516842 110 ntBASIC-1.28□□□□□ -2.61
LHX3Q9UBR4 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.28□□□□□ -2.61
LHX3Q9UBR4 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.28□□□□□ -2.61
LHX3Q9UBR4 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.29□□□□□ -2.62
LHX3Q9UBR4 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.29□□□□□ -2.62
LHX3Q9UBR4 RNU6-303P-201ENST00000517091 106 ntBASIC-1.29□□□□□ -2.62
LHX3Q9UBR4 MIR548AG1-201ENST00000579932 66 ntBASIC-1.29□□□□□ -2.62
LHX3Q9UBR4 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.29□□□□□ -2.62
LHX3Q9UBR4 RNU6-640P-201ENST00000363693 105 ntBASIC-1.3□□□□□ -2.62
LHX3Q9UBR4 SNORD115-33-201ENST00000363723 82 ntBASIC-1.3□□□□□ -2.62
LHX3Q9UBR4 RNU6-686P-201ENST00000364839 107 ntBASIC-1.3□□□□□ -2.62
LHX3Q9UBR4 SNORA8.1-201ENST00000384250 140 ntBASIC-1.3□□□□□ -2.62
LHX3Q9UBR4 MIR29B1-201ENST00000385015 81 ntBASIC-1.3□□□□□ -2.62
LHX3Q9UBR4 RNU6-147P-201ENST00000383983 107 ntBASIC-1.31□□□□□ -2.62
LHX3Q9UBR4 SNORD20-201ENST00000384550 80 ntBASIC-1.31□□□□□ -2.62
LHX3Q9UBR4 RNU6-807P-201ENST00000516805 107 ntBASIC-1.31□□□□□ -2.62
LHX3Q9UBR4 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.31□□□□□ -2.62
LHX3Q9UBR4 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.32□□□□□ -2.62
LHX3Q9UBR4 RNU6-478P-201ENST00000363904 110 ntBASIC-1.32□□□□□ -2.62
LHX3Q9UBR4 MIR889-201ENST00000401280 79 ntBASIC-1.32□□□□□ -2.62
LHX3Q9UBR4 RNU7-88P-201ENST00000458752 63 ntBASIC-1.32□□□□□ -2.62
LHX3Q9UBR4 RNA5SP180-201ENST00000516181 101 ntBASIC-1.32□□□□□ -2.62
LHX3Q9UBR4 SNORD115-22-201ENST00000364456 82 ntBASIC-1.33□□□□□ -2.62
LHX3Q9UBR4 RNU6-129P-201ENST00000391022 107 ntBASIC-1.33□□□□□ -2.62
LHX3Q9UBR4 MIR1246-201ENST00000636535 73 ntBASIC-1.33□□□□□ -2.62
LHX3Q9UBR4 MIR365A-201ENST00000362260 87 ntBASIC-1.34□□□□□ -2.62
LHX3Q9UBR4 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.34□□□□□ -2.62
LHX3Q9UBR4 RNU6-604P-201ENST00000390917 100 ntBASIC-1.34□□□□□ -2.62
LHX3Q9UBR4 AL603908.1-201ENST00000406098 201 ntBASIC-1.34□□□□□ -2.62
LHX3Q9UBR4 RNU6-919P-201ENST00000516731 104 ntBASIC-1.34□□□□□ -2.62
LHX3Q9UBR4 RNU6-844P-201ENST00000517175 102 ntBASIC-1.34□□□□□ -2.62
LHX3Q9UBR4 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.34□□□□□ -2.62
LHX3Q9UBR4 MIR4520-1-201ENST00000582609 70 ntBASIC-1.34□□□□□ -2.62
LHX3Q9UBR4 SNORD45.1-201ENST00000363181 77 ntBASIC-1.35□□□□□ -2.63
LHX3Q9UBR4 RNU6-215P-201ENST00000365169 102 ntBASIC-1.35□□□□□ -2.63
LHX3Q9UBR4 RNU6-1081P-201ENST00000384537 107 ntBASIC-1.35□□□□□ -2.63
LHX3Q9UBR4 MIR1285-2-201ENST00000408311 88 ntBASIC-1.35□□□□□ -2.63
LHX3Q9UBR4 AC074348.1-201ENST00000426503 132 ntBASIC-1.35□□□□□ -2.63
LHX3Q9UBR4 U7.5-201ENST00000517224 61 ntBASIC-1.35□□□□□ -2.63
LHX3Q9UBR4 AC006160.2-201ENST00000637708 154 ntBASIC-1.35□□□□□ -2.63
LHX3Q9UBR4 RNU6-675P-201ENST00000384236 104 ntBASIC-1.36□□□□□ -2.63
LHX3Q9UBR4 RNU6-246P-201ENST00000384702 107 ntBASIC-1.36□□□□□ -2.63
LHX3Q9UBR4 RNU6-982P-201ENST00000516216 102 ntBASIC-1.36□□□□□ -2.63
LHX3Q9UBR4 MIR4770-201ENST00000579149 58 ntBASIC-1.36□□□□□ -2.63
LHX3Q9UBR4 MIR4484-201ENST00000582855 83 ntBASIC-1.36□□□□□ -2.63
LHX3Q9UBR4 MIR6818-201ENST00000621576 65 ntBASIC-1.36□□□□□ -2.63
LHX3Q9UBR4 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.37□□□□□ -2.63
LHX3Q9UBR4 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.37□□□□□ -2.63
LHX3Q9UBR4 AL353691.2-201ENST00000443795 59 ntBASIC-1.37□□□□□ -2.63
LHX3Q9UBR4 RNU6-732P-201ENST00000516033 103 ntBASIC-1.37□□□□□ -2.63
LHX3Q9UBR4 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.38□□□□□ -2.63
LHX3Q9UBR4 SNORD114-3-201ENST00000364969 75 ntBASIC-1.38□□□□□ -2.63
LHX3Q9UBR4 RNU6-1134P-201ENST00000365156 101 ntBASIC-1.38□□□□□ -2.63
LHX3Q9UBR4 MIR1207-201ENST00000408249 87 ntBASIC-1.38□□□□□ -2.63
LHX3Q9UBR4 RNU4-61P-201ENST00000411243 107 ntBASIC-1.38□□□□□ -2.63
LHX3Q9UBR4 Y_RNA.17-201ENST00000362433 111 ntBASIC-1.39□□□□□ -2.63
LHX3Q9UBR4 MIR527-201ENST00000385244 85 ntBASIC-1.39□□□□□ -2.63
LHX3Q9UBR4 RNU6-576P-201ENST00000390854 102 ntBASIC-1.4□□□□□ -2.63
LHX3Q9UBR4 RNU7-174P-201ENST00000516248 59 ntBASIC-1.4□□□□□ -2.63
LHX3Q9UBR4 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.4□□□□□ -2.63
LHX3Q9UBR4 RNU6-540P-201ENST00000384622 101 ntBASIC-1.41□□□□□ -2.64
LHX3Q9UBR4 RNU6-789P-201ENST00000517105 102 ntBASIC-1.41□□□□□ -2.64
LHX3Q9UBR4 snoMBII-202.2-201ENST00000517263 86 ntBASIC-1.41□□□□□ -2.64
LHX3Q9UBR4 MIR4441-201ENST00000582623 100 ntBASIC-1.41□□□□□ -2.64
LHX3Q9UBR4 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.42□□□□□ -2.64
LHX3Q9UBR4 RNU6-1131P-201ENST00000364955 107 ntBASIC-1.42□□□□□ -2.64
LHX3Q9UBR4 RNU6-44P-201ENST00000384045 107 ntBASIC-1.42□□□□□ -2.64
LHX3Q9UBR4 MIR507-201ENST00000385234 94 ntBASIC-1.42□□□□□ -2.64
LHX3Q9UBR4 RNU6-380P-201ENST00000410207 107 ntBASIC-1.42□□□□□ -2.64
LHX3Q9UBR4 MIR6502-201ENST00000617296 76 ntBASIC-1.42□□□□□ -2.64
LHX3Q9UBR4 MIR1297-201ENST00000637311 77 ntBASIC-1.42□□□□□ -2.64
LHX3Q9UBR4 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.43□□□□□ -2.64
LHX3Q9UBR4 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.43□□□□□ -2.64
LHX3Q9UBR4 IGLL4P-201ENST00000614590 133 ntBASIC-1.43□□□□□ -2.64
LHX3Q9UBR4 Y_RNA.73-201ENST00000362910 113 ntBASIC-1.44□□□□□ -2.64
LHX3Q9UBR4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.44□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 260 ms