Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 RNU6-640P-201ENST00000363693 105 ntBASIC-1.16□□□□□ -2.6
VPS54Q9P1Q0 RNU6-478P-201ENST00000363904 110 ntBASIC-1.16□□□□□ -2.6
VPS54Q9P1Q0 SNORA26.4-201ENST00000391188 123 ntBASIC-1.16□□□□□ -2.6
VPS54Q9P1Q0 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.16□□□□□ -2.6
VPS54Q9P1Q0 HLA-S-202ENST00000425174 53 ntBASIC-1.16□□□□□ -2.6
VPS54Q9P1Q0 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.17□□□□□ -2.6
VPS54Q9P1Q0 RNU6-246P-201ENST00000384702 107 ntBASIC-1.17□□□□□ -2.6
VPS54Q9P1Q0 RNA5SP476-201ENST00000516613 103 ntBASIC-1.17□□□□□ -2.6
VPS54Q9P1Q0 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.18□□□□□ -2.6
VPS54Q9P1Q0 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.18□□□□□ -2.6
VPS54Q9P1Q0 RNU6-982P-201ENST00000516216 102 ntBASIC-1.18□□□□□ -2.6
VPS54Q9P1Q0 U7.5-201ENST00000517224 61 ntBASIC-1.18□□□□□ -2.6
VPS54Q9P1Q0 SNORD115-33-201ENST00000363723 82 ntBASIC-1.19□□□□□ -2.6
VPS54Q9P1Q0 RNU6-755P-201ENST00000364400 103 ntBASIC-1.19□□□□□ -2.6
VPS54Q9P1Q0 SNORA8.1-201ENST00000384250 140 ntBASIC-1.19□□□□□ -2.6
VPS54Q9P1Q0 RNU6-604P-201ENST00000390917 100 ntBASIC-1.19□□□□□ -2.6
VPS54Q9P1Q0 AL606753.1-201ENST00000427435 87 ntBASIC-1.19□□□□□ -2.6
VPS54Q9P1Q0 RNA5SP180-201ENST00000516181 101 ntBASIC-1.19□□□□□ -2.6
VPS54Q9P1Q0 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.19□□□□□ -2.6
VPS54Q9P1Q0 MIR5591-201ENST00000578248 65 ntBASIC-1.19□□□□□ -2.6
VPS54Q9P1Q0 MIR3675-201ENST00000583661 73 ntBASIC-1.19□□□□□ -2.6
VPS54Q9P1Q0 RNU6-147P-201ENST00000383983 107 ntBASIC-1.2□□□□□ -2.6
VPS54Q9P1Q0 RNU6-303P-201ENST00000517091 106 ntBASIC-1.2□□□□□ -2.6
VPS54Q9P1Q0 AP002795.1-201ENST00000534879 84 ntBASIC-1.2□□□□□ -2.6
VPS54Q9P1Q0 MIR4484-201ENST00000582855 83 ntBASIC-1.2□□□□□ -2.6
VPS54Q9P1Q0 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.21□□□□□ -2.6
VPS54Q9P1Q0 SNORD113-1-201ENST00000365321 69 ntBASIC-1.21□□□□□ -2.6
VPS54Q9P1Q0 RNU6-557P-201ENST00000516842 110 ntBASIC-1.21□□□□□ -2.6
VPS54Q9P1Q0 RNU6-686P-201ENST00000364839 107 ntBASIC-1.22□□□□□ -2.6
VPS54Q9P1Q0 SNORD20-201ENST00000384550 80 ntBASIC-1.22□□□□□ -2.6
VPS54Q9P1Q0 MIR889-201ENST00000401280 79 ntBASIC-1.22□□□□□ -2.6
VPS54Q9P1Q0 AC074348.1-201ENST00000426503 132 ntBASIC-1.22□□□□□ -2.6
VPS54Q9P1Q0 RNU6-732P-201ENST00000516033 103 ntBASIC-1.22□□□□□ -2.6
VPS54Q9P1Q0 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.23□□□□□ -2.61
VPS54Q9P1Q0 SNORD45.1-201ENST00000363181 77 ntBASIC-1.23□□□□□ -2.61
VPS54Q9P1Q0 RNU6-807P-201ENST00000516805 107 ntBASIC-1.23□□□□□ -2.61
VPS54Q9P1Q0 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.24□□□□□ -2.61
VPS54Q9P1Q0 RNU6-32P-201ENST00000383948 107 ntBASIC-1.24□□□□□ -2.61
VPS54Q9P1Q0 RNU6-13P-201ENST00000384248 107 ntBASIC-1.24□□□□□ -2.61
VPS54Q9P1Q0 RNU6-12P-201ENST00000384604 107 ntBASIC-1.24□□□□□ -2.61
VPS54Q9P1Q0 RNU6-41P-201ENST00000384741 107 ntBASIC-1.24□□□□□ -2.61
VPS54Q9P1Q0 SNORD19-201ENST00000391191 68 ntBASIC-1.24□□□□□ -2.61
VPS54Q9P1Q0 RNU6-675P-201ENST00000384236 104 ntBASIC-1.25□□□□□ -2.61
VPS54Q9P1Q0 MIR507-201ENST00000385234 94 ntBASIC-1.25□□□□□ -2.61
VPS54Q9P1Q0 RNU6-129P-201ENST00000391022 107 ntBASIC-1.25□□□□□ -2.61
VPS54Q9P1Q0 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.25□□□□□ -2.61
VPS54Q9P1Q0 RNU7-174P-201ENST00000516248 59 ntBASIC-1.25□□□□□ -2.61
VPS54Q9P1Q0 RNU6-844P-201ENST00000517175 102 ntBASIC-1.25□□□□□ -2.61
VPS54Q9P1Q0 MIR4770-201ENST00000579149 58 ntBASIC-1.25□□□□□ -2.61
VPS54Q9P1Q0 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.25□□□□□ -2.61
VPS54Q9P1Q0 MIR1246-201ENST00000636535 73 ntBASIC-1.25□□□□□ -2.61
VPS54Q9P1Q0 Y_RNA.73-201ENST00000362910 113 ntBASIC-1.26□□□□□ -2.61
VPS54Q9P1Q0 RNU6-215P-201ENST00000365169 102 ntBASIC-1.26□□□□□ -2.61
VPS54Q9P1Q0 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.26□□□□□ -2.61
VPS54Q9P1Q0 AL353691.2-201ENST00000443795 59 ntBASIC-1.26□□□□□ -2.61
VPS54Q9P1Q0 MIR6502-201ENST00000617296 76 ntBASIC-1.26□□□□□ -2.61
VPS54Q9P1Q0 AC006160.2-201ENST00000637708 154 ntBASIC-1.26□□□□□ -2.61
VPS54Q9P1Q0 Y_RNA.17-201ENST00000362433 111 ntBASIC-1.27□□□□□ -2.61
VPS54Q9P1Q0 RNU6-540P-201ENST00000384622 101 ntBASIC-1.27□□□□□ -2.61
VPS54Q9P1Q0 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.27□□□□□ -2.61
VPS54Q9P1Q0 snoMBII-202.2-201ENST00000517263 86 ntBASIC-1.27□□□□□ -2.61
VPS54Q9P1Q0 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.27□□□□□ -2.61
VPS54Q9P1Q0 MIR4520-1-201ENST00000582609 70 ntBASIC-1.27□□□□□ -2.61
VPS54Q9P1Q0 RNA5SP26-201ENST00000362406 119 ntBASIC-1.28□□□□□ -2.61
VPS54Q9P1Q0 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.28□□□□□ -2.61
VPS54Q9P1Q0 Y_RNA.593-201ENST00000410292 98 ntBASIC-1.28□□□□□ -2.61
VPS54Q9P1Q0 MIR6818-201ENST00000621576 65 ntBASIC-1.28□□□□□ -2.61
VPS54Q9P1Q0 MIR409-201ENST00000362237 79 ntBASIC-1.29□□□□□ -2.62
VPS54Q9P1Q0 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.29□□□□□ -2.62
VPS54Q9P1Q0 RNU6-1134P-201ENST00000365156 101 ntBASIC-1.29□□□□□ -2.62
VPS54Q9P1Q0 RNU6-49P-201ENST00000384256 107 ntBASIC-1.29□□□□□ -2.62
VPS54Q9P1Q0 MIR527-201ENST00000385244 85 ntBASIC-1.29□□□□□ -2.62
VPS54Q9P1Q0 RNA5SP266-201ENST00000410273 108 ntBASIC-1.29□□□□□ -2.62
VPS54Q9P1Q0 MIR664A-201ENST00000626086 82 ntBASIC-1.29□□□□□ -2.62
VPS54Q9P1Q0 RNU6-1131P-201ENST00000364955 107 ntBASIC-1.3□□□□□ -2.62
VPS54Q9P1Q0 RNU6-44P-201ENST00000384045 107 ntBASIC-1.3□□□□□ -2.62
VPS54Q9P1Q0 RNU6-458P-201ENST00000384179 107 ntBASIC-1.3□□□□□ -2.62
VPS54Q9P1Q0 MIR29B1-201ENST00000385015 81 ntBASIC-1.3□□□□□ -2.62
VPS54Q9P1Q0 RPL35AP4-201ENST00000412007 102 ntBASIC-1.3□□□□□ -2.62
VPS54Q9P1Q0 RNU6-919P-201ENST00000516731 104 ntBASIC-1.3□□□□□ -2.62
VPS54Q9P1Q0 U6.58-201ENST00000613107 107 ntBASIC-1.3□□□□□ -2.62
VPS54Q9P1Q0 MIR5683-201ENST00000636514 76 ntBASIC-1.3□□□□□ -2.62
VPS54Q9P1Q0 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.31□□□□□ -2.62
VPS54Q9P1Q0 HAR1A.1-201ENST00000459583 118 ntBASIC-1.31□□□□□ -2.62
VPS54Q9P1Q0 MIR548V-201ENST00000584165 80 ntBASIC-1.31□□□□□ -2.62
VPS54Q9P1Q0 MIR1285-2-201ENST00000408311 88 ntBASIC-1.32□□□□□ -2.62
VPS54Q9P1Q0 RNU4-61P-201ENST00000411243 107 ntBASIC-1.32□□□□□ -2.62
VPS54Q9P1Q0 U4.4-201ENST00000620626 117 ntBASIC-1.32□□□□□ -2.62
VPS54Q9P1Q0 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.33□□□□□ -2.62
VPS54Q9P1Q0 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.33□□□□□ -2.62
VPS54Q9P1Q0 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.33□□□□□ -2.62
VPS54Q9P1Q0 RNA5SP86-201ENST00000390869 98 ntBASIC-1.33□□□□□ -2.62
VPS54Q9P1Q0 RNU6-587P-201ENST00000391282 106 ntBASIC-1.33□□□□□ -2.62
VPS54Q9P1Q0 MIR548Q-201ENST00000408404 100 ntBASIC-1.33□□□□□ -2.62
VPS54Q9P1Q0 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.34□□□□□ -2.62
VPS54Q9P1Q0 AL603908.1-201ENST00000406098 201 ntBASIC-1.34□□□□□ -2.62
VPS54Q9P1Q0 RNA5SP89-201ENST00000410300 108 ntBASIC-1.35□□□□□ -2.63
VPS54Q9P1Q0 RNU6-168P-201ENST00000516189 101 ntBASIC-1.35□□□□□ -2.63
VPS54Q9P1Q0 AC091912.2-201ENST00000624798 167 ntBASIC-1.35□□□□□ -2.63
VPS54Q9P1Q0 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.36□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 288.1 ms