Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RNA5SP476-201ENST00000516613 103 ntBASIC-0.42□□□□□ -2.48
ZNF540Q8NDQ6 RNU6-807P-201ENST00000516805 107 ntBASIC-0.42□□□□□ -2.48
ZNF540Q8NDQ6 RNU6-242P-201ENST00000384359 107 ntBASIC-0.43□□□□□ -2.48
ZNF540Q8NDQ6 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.43□□□□□ -2.48
ZNF540Q8NDQ6 SNORA3B-201ENST00000391305 131 ntBASIC-0.43□□□□□ -2.48
ZNF540Q8NDQ6 SNORD75.1-201ENST00000408373 60 ntBASIC-0.43□□□□□ -2.48
ZNF540Q8NDQ6 RNY4P29-201ENST00000410801 97 ntBASIC-0.43□□□□□ -2.48
ZNF540Q8NDQ6 SNORA13-201ENST00000458790 133 ntBASIC-0.43□□□□□ -2.48
ZNF540Q8NDQ6 MIR3179-1-201ENST00000578940 84 ntBASIC-0.43□□□□□ -2.48
ZNF540Q8NDQ6 MIR3179-2-201ENST00000579107 84 ntBASIC-0.43□□□□□ -2.48
ZNF540Q8NDQ6 MIR3179-3-201ENST00000579566 84 ntBASIC-0.43□□□□□ -2.48
ZNF540Q8NDQ6 MIR3179-4-201ENST00000617599 84 ntBASIC-0.43□□□□□ -2.48
ZNF540Q8NDQ6 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.43□□□□□ -2.48
ZNF540Q8NDQ6 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.44□□□□□ -2.48
ZNF540Q8NDQ6 SNORD45A-201ENST00000384512 84 ntBASIC-0.44□□□□□ -2.48
ZNF540Q8NDQ6 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.44□□□□□ -2.48
ZNF540Q8NDQ6 MIR604-201ENST00000384880 94 ntBASIC-0.44□□□□□ -2.48
ZNF540Q8NDQ6 MIR124-2-201ENST00000385081 109 ntBASIC-0.44□□□□□ -2.48
ZNF540Q8NDQ6 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-0.44□□□□□ -2.48
ZNF540Q8NDQ6 AL021921.1-201ENST00000442774 93 ntBASIC-0.44□□□□□ -2.48
ZNF540Q8NDQ6 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-0.44□□□□□ -2.48
ZNF540Q8NDQ6 SNORD113.1-201ENST00000363280 73 ntBASIC-0.45□□□□□ -2.48
ZNF540Q8NDQ6 SNORD74.6-201ENST00000364796 70 ntBASIC-0.45□□□□□ -2.48
ZNF540Q8NDQ6 RNU6-246P-201ENST00000384702 107 ntBASIC-0.45□□□□□ -2.48
ZNF540Q8NDQ6 MIR204-201ENST00000385200 110 ntBASIC-0.45□□□□□ -2.48
ZNF540Q8NDQ6 MIR3134-201ENST00000579433 74 ntBASIC-0.45□□□□□ -2.48
ZNF540Q8NDQ6 FAS-AS1.1-201ENST00000615327 126 ntBASIC-0.45□□□□□ -2.48
ZNF540Q8NDQ6 RNU6-573P-201ENST00000383938 106 ntBASIC-0.46□□□□□ -2.48
ZNF540Q8NDQ6 RNU6-1241P-201ENST00000384536 107 ntBASIC-0.46□□□□□ -2.48
ZNF540Q8NDQ6 AP000533.3-201ENST00000447704 118 ntBASIC-0.46□□□□□ -2.48
ZNF540Q8NDQ6 HAR1A.1-201ENST00000459583 118 ntBASIC-0.46□□□□□ -2.48
ZNF540Q8NDQ6 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.46□□□□□ -2.48
ZNF540Q8NDQ6 U4.4-201ENST00000620626 117 ntBASIC-0.46□□□□□ -2.48
ZNF540Q8NDQ6 MIR4679-1-201ENST00000637619 75 ntBASIC-0.46□□□□□ -2.48
ZNF540Q8NDQ6 MIR101-1-201ENST00000362265 75 ntBASIC-0.47□□□□□ -2.48
ZNF540Q8NDQ6 RNU6-228P-201ENST00000362700 106 ntBASIC-0.47□□□□□ -2.48
ZNF540Q8NDQ6 RNA5SP173-201ENST00000364857 136 ntBASIC-0.47□□□□□ -2.48
ZNF540Q8NDQ6 SNORD115-31-201ENST00000365318 82 ntBASIC-0.47□□□□□ -2.48
ZNF540Q8NDQ6 SNORD116-24-201ENST00000384549 92 ntBASIC-0.47□□□□□ -2.48
ZNF540Q8NDQ6 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.47□□□□□ -2.48
ZNF540Q8NDQ6 RNA5SP451-201ENST00000410588 110 ntBASIC-0.47□□□□□ -2.48
ZNF540Q8NDQ6 RNA5SP25-201ENST00000410815 110 ntBASIC-0.47□□□□□ -2.48
ZNF540Q8NDQ6 AC108676.2-201ENST00000605225 163 ntBASIC-0.47□□□□□ -2.48
ZNF540Q8NDQ6 MIR548AZ-201ENST00000616567 95 ntBASIC-0.47□□□□□ -2.48
ZNF540Q8NDQ6 SNORA32.3-201ENST00000384772 121 ntBASIC-0.48□□□□□ -2.49
ZNF540Q8NDQ6 MIR517B-201ENST00000385102 67 ntBASIC-0.48□□□□□ -2.49
ZNF540Q8NDQ6 RNU6-380P-201ENST00000410207 107 ntBASIC-0.48□□□□□ -2.49
ZNF540Q8NDQ6 RNU6-687P-201ENST00000516443 89 ntBASIC-0.48□□□□□ -2.49
ZNF540Q8NDQ6 SNORA26.2-201ENST00000390922 122 ntBASIC-0.49□□□□□ -2.49
ZNF540Q8NDQ6 RNU6-587P-201ENST00000391282 106 ntBASIC-0.49□□□□□ -2.49
ZNF540Q8NDQ6 RPS29P8-201ENST00000445109 171 ntBASIC-0.49□□□□□ -2.49
ZNF540Q8NDQ6 AC021146.6-201ENST00000514659 117 ntBASIC-0.49□□□□□ -2.49
ZNF540Q8NDQ6 MIR8053-201ENST00000613344 75 ntBASIC-0.49□□□□□ -2.49
ZNF540Q8NDQ6 RNA5SP368-201ENST00000364298 116 ntBASIC-0.5□□□□□ -2.49
ZNF540Q8NDQ6 Y_RNA.325-201ENST00000365171 122 ntBASIC-0.5□□□□□ -2.49
ZNF540Q8NDQ6 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.5□□□□□ -2.49
ZNF540Q8NDQ6 RNU6-523P-201ENST00000516304 54 ntBASIC-0.5□□□□□ -2.49
ZNF540Q8NDQ6 RNU6-70P-201ENST00000516438 60 ntBASIC-0.5□□□□□ -2.49
ZNF540Q8NDQ6 RNU6-1124P-201ENST00000384169 107 ntBASIC-0.51□□□□□ -2.49
ZNF540Q8NDQ6 snoU13.19-201ENST00000459148 104 ntBASIC-0.51□□□□□ -2.49
ZNF540Q8NDQ6 SNORD18.2-201ENST00000459604 70 ntBASIC-0.51□□□□□ -2.49
ZNF540Q8NDQ6 MIR3202-2-201ENST00000635980 79 ntBASIC-0.51□□□□□ -2.49
ZNF540Q8NDQ6 RNU6-698P-201ENST00000363523 107 ntBASIC-0.52□□□□□ -2.49
ZNF540Q8NDQ6 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.52□□□□□ -2.49
ZNF540Q8NDQ6 Y_RNA.282-201ENST00000364793 102 ntBASIC-0.52□□□□□ -2.49
ZNF540Q8NDQ6 RNU6-34P-201ENST00000364874 107 ntBASIC-0.52□□□□□ -2.49
ZNF540Q8NDQ6 RNU6-431P-201ENST00000383874 107 ntBASIC-0.52□□□□□ -2.49
ZNF540Q8NDQ6 MIR548C-201ENST00000384815 97 ntBASIC-0.52□□□□□ -2.49
ZNF540Q8NDQ6 RNU6-279P-201ENST00000391297 101 ntBASIC-0.52□□□□□ -2.49
ZNF540Q8NDQ6 MIR1255A-201ENST00000408338 113 ntBASIC-0.52□□□□□ -2.49
ZNF540Q8NDQ6 MIR548V-201ENST00000584165 80 ntBASIC-0.52□□□□□ -2.49
ZNF540Q8NDQ6 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.53□□□□□ -2.49
ZNF540Q8NDQ6 SNORD114-17-201ENST00000364699 75 ntBASIC-0.53□□□□□ -2.49
ZNF540Q8NDQ6 MIR147A-201ENST00000385079 72 ntBASIC-0.53□□□□□ -2.49
ZNF540Q8NDQ6 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.53□□□□□ -2.49
ZNF540Q8NDQ6 RNU6-1015P-201ENST00000517121 99 ntBASIC-0.53□□□□□ -2.49
ZNF540Q8NDQ6 SNORD114-15-201ENST00000364687 72 ntBASIC-0.54□□□□□ -2.5
ZNF540Q8NDQ6 MIR1302-4-201ENST00000408701 150 ntBASIC-0.54□□□□□ -2.5
ZNF540Q8NDQ6 MTND4LP1-201ENST00000446263 157 ntBASIC-0.54□□□□□ -2.5
ZNF540Q8NDQ6 RNU6-857P-201ENST00000515893 110 ntBASIC-0.54□□□□□ -2.5
ZNF540Q8NDQ6 U7.5-201ENST00000517224 61 ntBASIC-0.54□□□□□ -2.5
ZNF540Q8NDQ6 RNU6-924P-201ENST00000362926 108 ntBASIC-0.55□□□□□ -2.5
ZNF540Q8NDQ6 RNU6-668P-201ENST00000364180 107 ntBASIC-0.55□□□□□ -2.5
ZNF540Q8NDQ6 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.55□□□□□ -2.5
ZNF540Q8NDQ6 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.55□□□□□ -2.5
ZNF540Q8NDQ6 RNA5SP225-201ENST00000410874 135 ntBASIC-0.55□□□□□ -2.5
ZNF540Q8NDQ6 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.56□□□□□ -2.5
ZNF540Q8NDQ6 RNA5SP215-201ENST00000363440 122 ntBASIC-0.56□□□□□ -2.5
ZNF540Q8NDQ6 RNU6-458P-201ENST00000384179 107 ntBASIC-0.56□□□□□ -2.5
ZNF540Q8NDQ6 MIR630-201ENST00000384957 97 ntBASIC-0.56□□□□□ -2.5
ZNF540Q8NDQ6 MIR154-201ENST00000385243 84 ntBASIC-0.56□□□□□ -2.5
ZNF540Q8NDQ6 SNORD64-201ENST00000386683 67 ntBASIC-0.56□□□□□ -2.5
ZNF540Q8NDQ6 SNORD78.1-201ENST00000390866 65 ntBASIC-0.56□□□□□ -2.5
ZNF540Q8NDQ6 SNORD63.1-201ENST00000516178 80 ntBASIC-0.56□□□□□ -2.5
ZNF540Q8NDQ6 AP002795.1-201ENST00000534879 84 ntBASIC-0.56□□□□□ -2.5
ZNF540Q8NDQ6 U6.58-201ENST00000613107 107 ntBASIC-0.56□□□□□ -2.5
ZNF540Q8NDQ6 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.57□□□□□ -2.5
ZNF540Q8NDQ6 RNU6-411P-201ENST00000384451 107 ntBASIC-0.57□□□□□ -2.5
ZNF540Q8NDQ6 RNU6-540P-201ENST00000384622 101 ntBASIC-0.57□□□□□ -2.5
ZNF540Q8NDQ6 MIR224-201ENST00000384889 81 ntBASIC-0.57□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 172.4 ms