Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 Y_RNA.431-201ENST00000384086 102 ntBASIC-1.74□□□□□ -2.69
CHD3Q12873 RNU6-554P-201ENST00000410466 106 ntBASIC-1.74□□□□□ -2.69
CHD3Q12873 AC072026.1-201ENST00000605023 201 ntBASIC-1.74□□□□□ -2.69
CHD3Q12873 U6.104-201ENST00000637979 90 ntBASIC-1.74□□□□□ -2.69
CHD3Q12873 Y_RNA.281-201ENST00000364774 94 ntBASIC-1.75□□□□□ -2.69
CHD3Q12873 SNORD113-3-201ENST00000364830 72 ntBASIC-1.75□□□□□ -2.69
CHD3Q12873 SNORA33.2-201ENST00000365413 134 ntBASIC-1.75□□□□□ -2.69
CHD3Q12873 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.75□□□□□ -2.69
CHD3Q12873 MIR548C-201ENST00000384815 97 ntBASIC-1.75□□□□□ -2.69
CHD3Q12873 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.75□□□□□ -2.69
CHD3Q12873 SNORD63.2-201ENST00000516303 64 ntBASIC-1.75□□□□□ -2.69
CHD3Q12873 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.75□□□□□ -2.69
CHD3Q12873 MIR7978-201ENST00000636158 59 ntBASIC-1.75□□□□□ -2.69
CHD3Q12873 Y_RNA.216-201ENST00000364205 93 ntBASIC-1.76□□□□□ -2.69
CHD3Q12873 Y_RNA.307-201ENST00000365022 117 ntBASIC-1.76□□□□□ -2.69
CHD3Q12873 Y_RNA.398-201ENST00000383952 99 ntBASIC-1.76□□□□□ -2.69
CHD3Q12873 Y_RNA.586-201ENST00000391146 98 ntBASIC-1.76□□□□□ -2.69
CHD3Q12873 AL589823.1-201ENST00000429577 183 ntBASIC-1.76□□□□□ -2.69
CHD3Q12873 AC097484.2-201ENST00000509147 251 ntBASIC-1.76□□□□□ -2.69
CHD3Q12873 RNU7-153P-201ENST00000516455 62 ntBASIC-1.76□□□□□ -2.69
CHD3Q12873 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.76□□□□□ -2.69
CHD3Q12873 AC012531.4-201ENST00000616509 177 ntBASIC-1.76□□□□□ -2.69
CHD3Q12873 SNORA41B-201ENST00000384785 128 ntBASIC-1.76□□□□□ -2.69
CHD3Q12873 RNU6-523P-201ENST00000516304 54 ntBASIC-1.76□□□□□ -2.69
CHD3Q12873 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.76□□□□□ -2.69
CHD3Q12873 MTND4P29-201ENST00000503122 1372 ntBASIC-1.76□□□□□ -2.69
CHD3Q12873 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.77□□□□□ -2.69
CHD3Q12873 RNU6-1020P-201ENST00000363684 107 ntBASIC-1.77□□□□□ -2.69
CHD3Q12873 Y_RNA.200-201ENST00000364018 102 ntBASIC-1.77□□□□□ -2.69
CHD3Q12873 Y_RNA.619-201ENST00000410951 90 ntBASIC-1.77□□□□□ -2.69
CHD3Q12873 SCARNA23-201ENST00000516060 130 ntBASIC-1.77□□□□□ -2.69
CHD3Q12873 RNU6-303P-201ENST00000517091 106 ntBASIC-1.77□□□□□ -2.69
CHD3Q12873 SNORD113.1-201ENST00000363280 73 ntBASIC-1.78□□□□□ -2.69
CHD3Q12873 RNU6-694P-201ENST00000364071 147 ntBASIC-1.78□□□□□ -2.69
CHD3Q12873 RNU6-1283P-201ENST00000365314 105 ntBASIC-1.78□□□□□ -2.69
CHD3Q12873 RNU6-974P-201ENST00000384099 108 ntBASIC-1.78□□□□□ -2.69
CHD3Q12873 MIR581-201ENST00000384895 96 ntBASIC-1.78□□□□□ -2.69
CHD3Q12873 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.78□□□□□ -2.69
CHD3Q12873 MIR1297-201ENST00000637311 77 ntBASIC-1.78□□□□□ -2.69
CHD3Q12873 Y_RNA.11-201ENST00000362375 109 ntBASIC-1.78□□□□□ -2.69
CHD3Q12873 Y_RNA.680-201ENST00000516441 93 ntBASIC-1.78□□□□□ -2.69
CHD3Q12873 MIR8053-201ENST00000613344 75 ntBASIC-1.78□□□□□ -2.69
CHD3Q12873 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.78□□□□□ -2.69
CHD3Q12873 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.79□□□□□ -2.7
CHD3Q12873 Y_RNA.20-201ENST00000362479 113 ntBASIC-1.79□□□□□ -2.7
CHD3Q12873 RNU6-598P-201ENST00000364017 105 ntBASIC-1.79□□□□□ -2.7
CHD3Q12873 Y_RNA.233-201ENST00000364407 101 ntBASIC-1.79□□□□□ -2.7
CHD3Q12873 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.79□□□□□ -2.7
CHD3Q12873 MT-TD-201ENST00000387419 68 ntBASIC-1.79□□□□□ -2.7
CHD3Q12873 Y_RNA.257-201ENST00000364596 102 ntBASIC-1.79□□□□□ -2.7
CHD3Q12873 RNU6-1107P-201ENST00000364817 104 ntBASIC-1.79□□□□□ -2.7
CHD3Q12873 Y_RNA.509-201ENST00000384506 99 ntBASIC-1.79□□□□□ -2.7
CHD3Q12873 MIR579-201ENST00000385221 98 ntBASIC-1.79□□□□□ -2.7
CHD3Q12873 Y_RNA.47-201ENST00000362697 108 ntBASIC-1.8□□□□□ -2.7
CHD3Q12873 RNU6-912P-201ENST00000363800 104 ntBASIC-1.8□□□□□ -2.7
CHD3Q12873 RNU6-426P-201ENST00000516464 97 ntBASIC-1.8□□□□□ -2.7
CHD3Q12873 RNU6-129P-201ENST00000391022 107 ntBASIC-1.81□□□□□ -2.7
CHD3Q12873 Y_RNA.291-201ENST00000364886 113 ntBASIC-1.81□□□□□ -2.7
CHD3Q12873 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.81□□□□□ -2.7
CHD3Q12873 SNORD33.1-201ENST00000516213 88 ntBASIC-1.81□□□□□ -2.7
CHD3Q12873 AP001318.4-201ENST00000616637 121 ntBASIC-1.82□□□□□ -2.7
CHD3Q12873 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.83□□□□□ -2.7
CHD3Q12873 RNU6-361P-201ENST00000364454 107 ntBASIC-1.83□□□□□ -2.7
CHD3Q12873 SNORD45.1-201ENST00000363181 77 ntBASIC-1.83□□□□□ -2.7
CHD3Q12873 RNU6-755P-201ENST00000364400 103 ntBASIC-1.83□□□□□ -2.7
CHD3Q12873 RNU6-1211P-201ENST00000459179 105 ntBASIC-1.83□□□□□ -2.7
CHD3Q12873 SNORD116-18-201ENST00000383961 92 ntBASIC-1.84□□□□□ -2.7
CHD3Q12873 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.84□□□□□ -2.7
CHD3Q12873 MIR125B1-201ENST00000385236 88 ntBASIC-1.84□□□□□ -2.7
CHD3Q12873 MIR3128-201ENST00000581957 66 ntBASIC-1.84□□□□□ -2.7
CHD3Q12873 U7.3-201ENST00000616123 62 ntBASIC-1.84□□□□□ -2.7
CHD3Q12873 MIR202-201ENST00000362219 110 ntBASIC-1.84□□□□□ -2.7
CHD3Q12873 RNA5SP173-201ENST00000364857 136 ntBASIC-1.84□□□□□ -2.7
CHD3Q12873 RNU6-574P-201ENST00000384265 107 ntBASIC-1.84□□□□□ -2.7
CHD3Q12873 RNU6-542P-201ENST00000516405 103 ntBASIC-1.84□□□□□ -2.7
CHD3Q12873 Y_RNA.356-201ENST00000365475 113 ntBASIC-1.85□□□□□ -2.71
CHD3Q12873 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.85□□□□□ -2.71
CHD3Q12873 RNU6-1160P-201ENST00000384546 104 ntBASIC-1.86□□□□□ -2.71
CHD3Q12873 AC020661.2-201ENST00000560114 134 ntBASIC-1.86□□□□□ -2.71
CHD3Q12873 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-1.86□□□□□ -2.71
CHD3Q12873 AC006160.2-201ENST00000637708 154 ntBASIC-1.86□□□□□ -2.71
CHD3Q12873 Y_RNA.107-201ENST00000363190 121 ntBASIC-1.87□□□□□ -2.71
CHD3Q12873 Y_RNA.574-201ENST00000384766 95 ntBASIC-1.87□□□□□ -2.71
CHD3Q12873 RNU6-141P-201ENST00000410499 105 ntBASIC-1.87□□□□□ -2.71
CHD3Q12873 RNU6-1023P-201ENST00000516137 106 ntBASIC-1.87□□□□□ -2.71
CHD3Q12873 MIR548X2-201ENST00000579776 100 ntBASIC-1.87□□□□□ -2.71
CHD3Q12873 AL353621.2-201ENST00000605340 133 ntBASIC-1.87□□□□□ -2.71
CHD3Q12873 RNU6-834P-201ENST00000362367 110 ntBASIC-1.88□□□□□ -2.71
CHD3Q12873 Y_RNA.240-201ENST00000364469 95 ntBASIC-1.88□□□□□ -2.71
CHD3Q12873 SNORD45A-201ENST00000384512 84 ntBASIC-1.88□□□□□ -2.71
CHD3Q12873 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.88□□□□□ -2.71
CHD3Q12873 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.88□□□□□ -2.71
CHD3Q12873 RNU6-904P-201ENST00000516206 101 ntBASIC-1.88□□□□□ -2.71
CHD3Q12873 MIR154-201ENST00000385243 84 ntBASIC-1.88□□□□□ -2.71
CHD3Q12873 AC074348.1-201ENST00000426503 132 ntBASIC-1.88□□□□□ -2.71
CHD3Q12873 MTND4LP9-201ENST00000427694 174 ntBASIC-1.88□□□□□ -2.71
CHD3Q12873 RNU6-68P-201ENST00000516576 104 ntBASIC-1.88□□□□□ -2.71
CHD3Q12873 Y_RNA.818-201ENST00000618813 71 ntBASIC-1.88□□□□□ -2.71
CHD3Q12873 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.89□□□□□ -2.71
CHD3Q12873 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.89□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 225.4 ms