Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SNX3P1X-201ENST00000414887 175 ntBASIC0.27□□□□□ -2.37
COL4A4P53420 Y_RNA.236-201ENST00000364427 111 ntBASIC0.27□□□□□ -2.37
COL4A4P53420 SNORD113-4-201ENST00000364802 75 ntBASIC0.27□□□□□ -2.37
COL4A4P53420 SNORA63.6-201ENST00000364921 119 ntBASIC0.27□□□□□ -2.37
COL4A4P53420 MIR501-201ENST00000390204 84 ntBASIC0.27□□□□□ -2.37
COL4A4P53420 SCARNA21.1-201ENST00000515996 128 ntBASIC0.27□□□□□ -2.37
COL4A4P53420 U7.6-201ENST00000610841 64 ntBASIC0.27□□□□□ -2.37
COL4A4P53420 MIR6773-201ENST00000612812 74 ntBASIC0.27□□□□□ -2.37
COL4A4P53420 MIR499B-201ENST00000636498 73 ntBASIC0.27□□□□□ -2.37
COL4A4P53420 SNORD115-25-201ENST00000362619 82 ntBASIC0.26□□□□□ -2.37
COL4A4P53420 RNA5SP128-201ENST00000365305 116 ntBASIC0.26□□□□□ -2.37
COL4A4P53420 MIR760-201ENST00000390220 80 ntBASIC0.26□□□□□ -2.37
COL4A4P53420 AL021921.1-201ENST00000442774 93 ntBASIC0.26□□□□□ -2.37
COL4A4P53420 RNU7-154P-201ENST00000516194 62 ntBASIC0.26□□□□□ -2.37
COL4A4P53420 SCARNA11.2-201ENST00000517183 154 ntBASIC0.26□□□□□ -2.37
COL4A4P53420 MIR7978-201ENST00000636158 59 ntBASIC0.26□□□□□ -2.37
COL4A4P53420 MIR582-201ENST00000365731 98 ntBASIC0.25□□□□□ -2.37
COL4A4P53420 MIR101-1-201ENST00000362265 75 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 RNU6-1036P-201ENST00000383959 104 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 SNORA49-201ENST00000386157 136 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 RNU6-782P-201ENST00000516852 104 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 Y_RNA.722-201ENST00000517279 114 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 SNORD116-16-201ENST00000384533 92 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 RNU6-808P-201ENST00000391233 108 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 SNORD71-201ENST00000411292 86 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 AC096531.1-201ENST00000419107 107 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 AC079150.2-201ENST00000443733 78 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 RPS29P8-201ENST00000445109 171 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 RNU6-1262P-201ENST00000516217 96 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 RNA5SP470-201ENST00000516463 106 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 RNU6-122P-201ENST00000516818 107 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 MIR548X-201ENST00000580069 75 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 MIR548AX-201ENST00000580117 73 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 MIR4432-201ENST00000581823 84 ntBASIC0.24□□□□□ -2.37
COL4A4P53420 MIR548C-201ENST00000384815 97 ntBASIC0.23□□□□□ -2.37
COL4A4P53420 MIR527-201ENST00000385244 85 ntBASIC0.23□□□□□ -2.37
COL4A4P53420 RNU6-141P-201ENST00000410499 105 ntBASIC0.23□□□□□ -2.37
COL4A4P53420 RNU7-119P-201ENST00000459279 63 ntBASIC0.23□□□□□ -2.37
COL4A4P53420 U7.5-201ENST00000517224 61 ntBASIC0.22□□□□□ -2.37
COL4A4P53420 MIR4315-1-201ENST00000636800 73 ntBASIC0.22□□□□□ -2.37
COL4A4P53420 MIR4315-2-201ENST00000640925 73 ntBASIC0.22□□□□□ -2.37
COL4A4P53420 SNORD114-31-201ENST00000363219 75 ntBASIC0.21□□□□□ -2.38
COL4A4P53420 MIR643-201ENST00000385267 97 ntBASIC0.21□□□□□ -2.38
COL4A4P53420 RNU6-180P-201ENST00000516697 61 ntBASIC0.21□□□□□ -2.38
COL4A4P53420 AC069113.3-201ENST00000521019 150 ntBASIC0.21□□□□□ -2.38
COL4A4P53420 AP000676.1-201ENST00000533307 52 ntBASIC0.21□□□□□ -2.38
COL4A4P53420 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.21□□□□□ -2.38
COL4A4P53420 AC090625.1-201ENST00000357130 210 ntBASIC0.21□□□□□ -2.38
COL4A4P53420 RNU4-33P-201ENST00000364316 85 ntBASIC0.21□□□□□ -2.38
COL4A4P53420 MIR876-201ENST00000401147 81 ntBASIC0.21□□□□□ -2.38
COL4A4P53420 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.21□□□□□ -2.38
COL4A4P53420 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.21□□□□□ -2.38
COL4A4P53420 RNU7-151P-201ENST00000516930 53 ntBASIC0.21□□□□□ -2.38
COL4A4P53420 RNU6-1327P-201ENST00000365302 105 ntBASIC0.2□□□□□ -2.38
COL4A4P53420 RNU6-815P-201ENST00000384080 113 ntBASIC0.2□□□□□ -2.38
COL4A4P53420 RNU6-1184P-201ENST00000384588 108 ntBASIC0.2□□□□□ -2.38
COL4A4P53420 MIR892B-201ENST00000401279 77 ntBASIC0.2□□□□□ -2.38
COL4A4P53420 MIR548H2-201ENST00000408874 88 ntBASIC0.2□□□□□ -2.38
COL4A4P53420 SNORA68.3-201ENST00000515906 83 ntBASIC0.2□□□□□ -2.38
COL4A4P53420 CR383656.4-201ENST00000546909 122 ntBASIC0.2□□□□□ -2.38
COL4A4P53420 snoR1.1-201ENST00000628177 80 ntBASIC0.2□□□□□ -2.38
COL4A4P53420 RNA5SP214-201ENST00000363378 118 ntBASIC0.19□□□□□ -2.38
COL4A4P53420 RNU6-1246P-201ENST00000391064 107 ntBASIC0.19□□□□□ -2.38
COL4A4P53420 MIR4667-201ENST00000578933 66 ntBASIC0.19□□□□□ -2.38
COL4A4P53420 MIR548AG1-201ENST00000579932 66 ntBASIC0.19□□□□□ -2.38
COL4A4P53420 MIR5093-201ENST00000583199 100 ntBASIC0.19□□□□□ -2.38
COL4A4P53420 AL353803.5-201ENST00000599815 141 ntBASIC0.19□□□□□ -2.38
COL4A4P53420 RNU6-810P-201ENST00000364001 107 ntBASIC0.18□□□□□ -2.38
COL4A4P53420 RNU6-945P-201ENST00000383947 107 ntBASIC0.18□□□□□ -2.38
COL4A4P53420 SNORD116.2-201ENST00000391251 93 ntBASIC0.18□□□□□ -2.38
COL4A4P53420 SNORD57-201ENST00000448188 72 ntBASIC0.18□□□□□ -2.38
COL4A4P53420 RNU6-518P-201ENST00000516056 96 ntBASIC0.18□□□□□ -2.38
COL4A4P53420 RNA5SP134-201ENST00000516492 96 ntBASIC0.18□□□□□ -2.38
COL4A4P53420 Y_RNA.698-201ENST00000516798 118 ntBASIC0.18□□□□□ -2.38
COL4A4P53420 RNU6-419P-201ENST00000517030 63 ntBASIC0.18□□□□□ -2.38
COL4A4P53420 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.18□□□□□ -2.38
COL4A4P53420 AL391099.1-201ENST00000624635 187 ntBASIC0.18□□□□□ -2.38
COL4A4P53420 RNU6-1312P-201ENST00000362425 108 ntBASIC0.18□□□□□ -2.38
COL4A4P53420 MIR548AA1-201ENST00000384971 97 ntBASIC0.18□□□□□ -2.38
COL4A4P53420 SNORD115-23-201ENST00000364461 82 ntBASIC0.17□□□□□ -2.38
COL4A4P53420 RNU6-458P-201ENST00000384179 107 ntBASIC0.17□□□□□ -2.38
COL4A4P53420 RNU6-246P-201ENST00000384702 107 ntBASIC0.17□□□□□ -2.38
COL4A4P53420 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.17□□□□□ -2.38
COL4A4P53420 MIR4280-201ENST00000582178 76 ntBASIC0.17□□□□□ -2.38
COL4A4P53420 MIR4743-201ENST00000584576 69 ntBASIC0.17□□□□□ -2.38
COL4A4P53420 MIR7110-201ENST00000612638 86 ntBASIC0.17□□□□□ -2.38
COL4A4P53420 U6.58-201ENST00000613107 107 ntBASIC0.17□□□□□ -2.38
COL4A4P53420 MIR6507-201ENST00000613630 70 ntBASIC0.17□□□□□ -2.38
COL4A4P53420 MIR6854-201ENST00000614935 69 ntBASIC0.17□□□□□ -2.38
COL4A4P53420 AL445584.3-201ENST00000617173 78 ntBASIC0.17□□□□□ -2.38
COL4A4P53420 MIR429-201ENST00000362106 83 ntBASIC0.16□□□□□ -2.38
COL4A4P53420 RNU6-924P-201ENST00000362926 108 ntBASIC0.16□□□□□ -2.38
COL4A4P53420 RNU6-900P-201ENST00000384498 102 ntBASIC0.16□□□□□ -2.38
COL4A4P53420 MIR593-201ENST00000384856 100 ntBASIC0.16□□□□□ -2.38
COL4A4P53420 MIR610-201ENST00000385139 96 ntBASIC0.16□□□□□ -2.38
COL4A4P53420 SNORA40B-201ENST00000385573 128 ntBASIC0.16□□□□□ -2.38
COL4A4P53420 RNU6-980P-201ENST00000516925 103 ntBASIC0.16□□□□□ -2.38
COL4A4P53420 MIR4490-201ENST00000582647 84 ntBASIC0.16□□□□□ -2.38
COL4A4P53420 MIR8068-201ENST00000618032 68 ntBASIC0.16□□□□□ -2.38
COL4A4P53420 RNU6-753P-201ENST00000363926 107 ntBASIC0.15□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 9 ms