Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MIR1295B-201ENST00000636144 60 ntBASIC-0.07□□□□□ -2.42
HOXD3P31249 MIR4662A-201ENST00000637499 67 ntBASIC-0.07□□□□□ -2.42
HOXD3P31249 SNORD114-28-201ENST00000363610 72 ntBASIC-0.08□□□□□ -2.42
HOXD3P31249 Y_RNA.565-201ENST00000384719 101 ntBASIC-0.08□□□□□ -2.42
HOXD3P31249 MIR224-201ENST00000384889 81 ntBASIC-0.08□□□□□ -2.42
HOXD3P31249 MIR8064-201ENST00000612863 90 ntBASIC-0.08□□□□□ -2.42
HOXD3P31249 SNORD114-12-201ENST00000365400 75 ntBASIC-0.09□□□□□ -2.42
HOXD3P31249 RNU6-900P-201ENST00000384498 102 ntBASIC-0.1□□□□□ -2.43
HOXD3P31249 Y_RNA.545-201ENST00000384652 105 ntBASIC-0.1□□□□□ -2.43
HOXD3P31249 MIR548C-201ENST00000384815 97 ntBASIC-0.1□□□□□ -2.43
HOXD3P31249 RNA5SP451-201ENST00000410588 110 ntBASIC-0.1□□□□□ -2.43
HOXD3P31249 MIR1468-201ENST00000410600 86 ntBASIC-0.1□□□□□ -2.43
HOXD3P31249 RNU6-638P-201ENST00000516582 104 ntBASIC-0.1□□□□□ -2.43
HOXD3P31249 U2.7-201ENST00000619197 100 ntBASIC-0.1□□□□□ -2.43
HOXD3P31249 SNORD116-24-201ENST00000384549 92 ntBASIC-0.11□□□□□ -2.43
HOXD3P31249 RNU7-55P-201ENST00000459426 62 ntBASIC-0.11□□□□□ -2.43
HOXD3P31249 RNY1P9-201ENST00000532431 109 ntBASIC-0.11□□□□□ -2.43
HOXD3P31249 SNORA18.1-201ENST00000363418 128 ntBASIC-0.12□□□□□ -2.43
HOXD3P31249 RNU6-895P-201ENST00000384125 103 ntBASIC-0.12□□□□□ -2.43
HOXD3P31249 RNU6-540P-201ENST00000384622 101 ntBASIC-0.12□□□□□ -2.43
HOXD3P31249 MTND4LP1-201ENST00000446263 157 ntBASIC-0.12□□□□□ -2.43
HOXD3P31249 RNU6-634P-201ENST00000459134 106 ntBASIC-0.12□□□□□ -2.43
HOXD3P31249 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.12□□□□□ -2.43
HOXD3P31249 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.13□□□□□ -2.43
HOXD3P31249 RNU6-668P-201ENST00000364180 107 ntBASIC-0.13□□□□□ -2.43
HOXD3P31249 MIR519A2-201ENST00000384990 87 ntBASIC-0.13□□□□□ -2.43
HOXD3P31249 MIR4723-201ENST00000585070 81 ntBASIC-0.13□□□□□ -2.43
HOXD3P31249 AL391099.1-201ENST00000624635 187 ntBASIC-0.13□□□□□ -2.43
HOXD3P31249 SNORD115-23-201ENST00000364461 82 ntBASIC-0.14□□□□□ -2.43
HOXD3P31249 SNORD56B-201ENST00000384713 71 ntBASIC-0.14□□□□□ -2.43
HOXD3P31249 MIR5704-201ENST00000584029 77 ntBASIC-0.14□□□□□ -2.43
HOXD3P31249 snoR1.1-201ENST00000628177 80 ntBASIC-0.14□□□□□ -2.43
HOXD3P31249 RNU6-901P-201ENST00000384593 106 ntBASIC-0.15□□□□□ -2.43
HOXD3P31249 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.15□□□□□ -2.43
HOXD3P31249 RNU4-63P-201ENST00000411313 118 ntBASIC-0.15□□□□□ -2.43
HOXD3P31249 SNX3P1X-201ENST00000414887 175 ntBASIC-0.15□□□□□ -2.43
HOXD3P31249 RNU6-518P-201ENST00000516056 96 ntBASIC-0.15□□□□□ -2.43
HOXD3P31249 RNU6-973P-201ENST00000364690 107 ntBASIC-0.16□□□□□ -2.44
HOXD3P31249 AL445193.1-201ENST00000441183 141 ntBASIC-0.16□□□□□ -2.44
HOXD3P31249 SNORD4A-201ENST00000459174 72 ntBASIC-0.16□□□□□ -2.44
HOXD3P31249 RNU6-320P-201ENST00000516511 106 ntBASIC-0.16□□□□□ -2.44
HOXD3P31249 MIR4432-201ENST00000581823 84 ntBASIC-0.16□□□□□ -2.44
HOXD3P31249 AL353803.5-201ENST00000599815 141 ntBASIC-0.16□□□□□ -2.44
HOXD3P31249 MIR8068-201ENST00000618032 68 ntBASIC-0.16□□□□□ -2.44
HOXD3P31249 RNA5SP275-201ENST00000363936 118 ntBASIC-0.17□□□□□ -2.44
HOXD3P31249 MIR196A2-201ENST00000385189 110 ntBASIC-0.17□□□□□ -2.44
HOXD3P31249 AC096531.1-201ENST00000419107 107 ntBASIC-0.17□□□□□ -2.44
HOXD3P31249 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.17□□□□□ -2.44
HOXD3P31249 MIR548AX-201ENST00000580117 73 ntBASIC-0.17□□□□□ -2.44
HOXD3P31249 MIR4280-201ENST00000582178 76 ntBASIC-0.17□□□□□ -2.44
HOXD3P31249 MIR548V-201ENST00000584165 80 ntBASIC-0.17□□□□□ -2.44
HOXD3P31249 RNU7-174P-201ENST00000516248 59 ntBASIC-0.18□□□□□ -2.44
HOXD3P31249 MIR548AG1-201ENST00000579932 66 ntBASIC-0.18□□□□□ -2.44
HOXD3P31249 MIR3666-201ENST00000607845 111 ntBASIC-0.18□□□□□ -2.44
HOXD3P31249 AL590491.3-201ENST00000610731 82 ntBASIC-0.18□□□□□ -2.44
HOXD3P31249 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.19□□□□□ -2.44
HOXD3P31249 RNU6-663P-201ENST00000391105 106 ntBASIC-0.19□□□□□ -2.44
HOXD3P31249 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.19□□□□□ -2.44
HOXD3P31249 MIR630-201ENST00000384957 97 ntBASIC-0.2□□□□□ -2.44
HOXD3P31249 MIR517B-201ENST00000385102 67 ntBASIC-0.2□□□□□ -2.44
HOXD3P31249 SNORD30.1-201ENST00000391309 70 ntBASIC-0.2□□□□□ -2.44
HOXD3P31249 SNORD75.1-201ENST00000408373 60 ntBASIC-0.2□□□□□ -2.44
HOXD3P31249 AL021921.1-201ENST00000442774 93 ntBASIC-0.2□□□□□ -2.44
HOXD3P31249 RNA5SP470-201ENST00000516463 106 ntBASIC-0.2□□□□□ -2.44
HOXD3P31249 MIR3681-201ENST00000580089 72 ntBASIC-0.2□□□□□ -2.44
HOXD3P31249 MIR4436A-201ENST00000585278 85 ntBASIC-0.2□□□□□ -2.44
HOXD3P31249 SNORD114-11-201ENST00000363738 75 ntBASIC-0.21□□□□□ -2.44
HOXD3P31249 SNORA32.3-201ENST00000384772 121 ntBASIC-0.21□□□□□ -2.44
HOXD3P31249 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.21□□□□□ -2.44
HOXD3P31249 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.21□□□□□ -2.44
HOXD3P31249 RNA5SP300-201ENST00000391197 107 ntBASIC-0.21□□□□□ -2.44
HOXD3P31249 RNU6-871P-201ENST00000516122 100 ntBASIC-0.21□□□□□ -2.44
HOXD3P31249 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.22□□□□□ -2.44
HOXD3P31249 SNORD126-201ENST00000459475 77 ntBASIC-0.22□□□□□ -2.44
HOXD3P31249 AC114755.3-201ENST00000481111 251 ntBASIC-0.22□□□□□ -2.44
HOXD3P31249 SNORD38.3-201ENST00000516599 73 ntBASIC-0.22□□□□□ -2.44
HOXD3P31249 MIR4263-201ENST00000584745 83 ntBASIC-0.22□□□□□ -2.44
HOXD3P31249 MIR6854-201ENST00000614935 69 ntBASIC-0.22□□□□□ -2.44
HOXD3P31249 RNA5SP215-201ENST00000363440 122 ntBASIC-0.23□□□□□ -2.45
HOXD3P31249 RNU6-630P-201ENST00000391258 106 ntBASIC-0.23□□□□□ -2.45
HOXD3P31249 MIR4464-201ENST00000580818 92 ntBASIC-0.23□□□□□ -2.45
HOXD3P31249 MIR548AZ-201ENST00000616567 95 ntBASIC-0.23□□□□□ -2.45
HOXD3P31249 U4.4-201ENST00000620626 117 ntBASIC-0.23□□□□□ -2.45
HOXD3P31249 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.24□□□□□ -2.45
HOXD3P31249 Y_RNA.325-201ENST00000365171 122 ntBASIC-0.24□□□□□ -2.45
HOXD3P31249 SNORD14C-201ENST00000365382 88 ntBASIC-0.24□□□□□ -2.45
HOXD3P31249 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.24□□□□□ -2.45
HOXD3P31249 RNU6-1296P-201ENST00000383879 107 ntBASIC-0.24□□□□□ -2.45
HOXD3P31249 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.24□□□□□ -2.45
HOXD3P31249 RNU6-649P-201ENST00000384463 107 ntBASIC-0.24□□□□□ -2.45
HOXD3P31249 RNU7-154P-201ENST00000516194 62 ntBASIC-0.24□□□□□ -2.45
HOXD3P31249 RNA5SP66-201ENST00000517178 101 ntBASIC-0.24□□□□□ -2.45
HOXD3P31249 MIR6888-201ENST00000621977 67 ntBASIC-0.24□□□□□ -2.45
HOXD3P31249 MIR4788-201ENST00000639104 80 ntBASIC-0.24□□□□□ -2.45
HOXD3P31249 Y_RNA.443-201ENST00000384135 111 ntBASIC-0.25□□□□□ -2.45
HOXD3P31249 RNU6-284P-201ENST00000411105 106 ntBASIC-0.25□□□□□ -2.45
HOXD3P31249 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.25□□□□□ -2.45
HOXD3P31249 RNA5SP169-201ENST00000517268 117 ntBASIC-0.25□□□□□ -2.45
HOXD3P31249 U4.2-201ENST00000618561 85 ntBASIC-0.25□□□□□ -2.45
HOXD3P31249 RNU6-698P-201ENST00000363523 107 ntBASIC-0.26□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 318.9 ms