Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MIR4777-201ENST00000583710 86 ntBASIC-4.89□□□□□ -3.19
HMGA1P17096 SNORA63.7-201ENST00000365579 123 ntBASIC-4.9□□□□□ -3.19
HMGA1P17096 SNORA8.1-201ENST00000384250 140 ntBASIC-4.9□□□□□ -3.19
HMGA1P17096 RNY3P15-201ENST00000516297 97 ntBASIC-4.9□□□□□ -3.19
HMGA1P17096 MIR3675-201ENST00000583661 73 ntBASIC-4.9□□□□□ -3.19
HMGA1P17096 DLEU2_1.1-201ENST00000612089 120 ntBASIC-4.9□□□□□ -3.19
HMGA1P17096 SNORD45.1-201ENST00000363181 77 ntBASIC-4.91□□□□□ -3.2
HMGA1P17096 RNU6-639P-201ENST00000384074 107 ntBASIC-4.91□□□□□ -3.2
HMGA1P17096 RNU7-30P-201ENST00000516835 62 ntBASIC-4.91□□□□□ -3.2
HMGA1P17096 MIR3121-201ENST00000579680 77 ntBASIC-4.91□□□□□ -3.2
HMGA1P17096 Y_RNA.29-201ENST00000362570 113 ntBASIC-4.92□□□□□ -3.2
HMGA1P17096 Y_RNA.89-201ENST00000363031 102 ntBASIC-4.92□□□□□ -3.2
HMGA1P17096 Y_RNA.309-201ENST00000365046 111 ntBASIC-4.92□□□□□ -3.2
HMGA1P17096 RNU6-1042P-201ENST00000384204 107 ntBASIC-4.92□□□□□ -3.2
HMGA1P17096 MTND4LP1-201ENST00000446263 157 ntBASIC-4.92□□□□□ -3.2
HMGA1P17096 SNORD11.1-201ENST00000459482 85 ntBASIC-4.92□□□□□ -3.2
HMGA1P17096 Y_RNA.84-201ENST00000363011 104 ntBASIC-4.93□□□□□ -3.2
HMGA1P17096 DEFB108C-201ENST00000400154 252 ntBASIC-4.93□□□□□ -3.2
HMGA1P17096 MIR3658-201ENST00000636291 56 ntBASIC-4.93□□□□□ -3.2
HMGA1P17096 Y_RNA.19-201ENST00000362462 99 ntBASIC-4.94□□□□□ -3.2
HMGA1P17096 Y_RNA.26-201ENST00000362539 101 ntBASIC-4.94□□□□□ -3.2
HMGA1P17096 RNU6-450P-201ENST00000364654 107 ntBASIC-4.94□□□□□ -3.2
HMGA1P17096 RNU6-422P-201ENST00000384632 107 ntBASIC-4.94□□□□□ -3.2
HMGA1P17096 U2.14-201ENST00000615943 113 ntBASIC-4.94□□□□□ -3.2
HMGA1P17096 MTND4LP32-201ENST00000636111 270 ntBASIC-4.94□□□□□ -3.2
HMGA1P17096 RNA5SP215-201ENST00000363440 122 ntBASIC-4.96□□□□□ -3.2
HMGA1P17096 Y_RNA.259-201ENST00000364619 101 ntBASIC-4.96□□□□□ -3.2
HMGA1P17096 Y_RNA.688-201ENST00000516565 95 ntBASIC-4.96□□□□□ -3.2
HMGA1P17096 AC006362.1-201ENST00000567392 174 ntBASIC-4.97□□□□□ -3.21
HMGA1P17096 AL603755.1-201ENST00000619504 163 ntBASIC-4.97□□□□□ -3.21
HMGA1P17096 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC-4.97□□□□□ -3.21
HMGA1P17096 Y_RNA.206-201ENST00000364136 102 ntBASIC-4.98□□□□□ -3.21
HMGA1P17096 RNU6-742P-201ENST00000365289 107 ntBASIC-4.98□□□□□ -3.21
HMGA1P17096 RNU6-314P-201ENST00000516574 104 ntBASIC-4.98□□□□□ -3.21
HMGA1P17096 MIR3611-201ENST00000584484 83 ntBASIC-4.98□□□□□ -3.21
HMGA1P17096 RNU6-810P-201ENST00000364001 107 ntBASIC-4.99□□□□□ -3.21
HMGA1P17096 Y_RNA.264-201ENST00000364665 102 ntBASIC-4.99□□□□□ -3.21
HMGA1P17096 Y_RNA.553-201ENST00000384670 102 ntBASIC-5□□□□□ -3.21
HMGA1P17096 AL451105.1-201ENST00000450005 189 ntBASIC-5□□□□□ -3.21
HMGA1P17096 AL035470.1-201ENST00000622571 220 ntBASIC-5□□□□□ -3.21
HMGA1P17096 SNORD45.2-201ENST00000363552 72 ntBASIC-5.01□□□□□ -3.21
HMGA1P17096 SNORA40.4-201ENST00000390971 128 ntBASIC-5.01□□□□□ -3.21
HMGA1P17096 MIR1302-11-201ENST00000408051 138 ntBASIC-5.01□□□□□ -3.21
HMGA1P17096 MIR1302-9-201ENST00000408365 138 ntBASIC-5.01□□□□□ -3.21
HMGA1P17096 MIR1302-10-201ENST00000408734 138 ntBASIC-5.01□□□□□ -3.21
HMGA1P17096 MIR1302-2-201ENST00000607096 138 ntBASIC-5.01□□□□□ -3.21
HMGA1P17096 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-5.01□□□□□ -3.21
HMGA1P17096 Y_RNA.17-201ENST00000362433 111 ntBASIC-5.03□□□□□ -3.21
HMGA1P17096 Y_RNA.252-201ENST00000364556 101 ntBASIC-5.03□□□□□ -3.21
HMGA1P17096 MIR620-201ENST00000385232 95 ntBASIC-5.03□□□□□ -3.21
HMGA1P17096 Y_RNA.705-201ENST00000516862 110 ntBASIC-5.03□□□□□ -3.21
HMGA1P17096 Y_RNA.15-201ENST00000362420 102 ntBASIC-5.05□□□□□ -3.22
HMGA1P17096 Y_RNA.292-201ENST00000364904 97 ntBASIC-5.05□□□□□ -3.22
HMGA1P17096 RNU6-915P-201ENST00000364943 103 ntBASIC-5.05□□□□□ -3.22
HMGA1P17096 Y_RNA.335-201ENST00000365299 96 ntBASIC-5.05□□□□□ -3.22
HMGA1P17096 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-5.05□□□□□ -3.22
HMGA1P17096 RNU6-836P-201ENST00000362920 107 ntBASIC-5.06□□□□□ -3.22
HMGA1P17096 MIR7110-201ENST00000612638 86 ntBASIC-5.06□□□□□ -3.22
HMGA1P17096 Y_RNA.165-201ENST00000363721 102 ntBASIC-5.07□□□□□ -3.22
HMGA1P17096 RNU6-887P-201ENST00000410660 100 ntBASIC-5.07□□□□□ -3.22
HMGA1P17096 AC130289.1-201ENST00000577321 73 ntBASIC-5.07□□□□□ -3.22
HMGA1P17096 SNORD116-29-201ENST00000384516 83 ntBASIC-5.08□□□□□ -3.22
HMGA1P17096 RNU6-460P-201ENST00000391158 108 ntBASIC-5.08□□□□□ -3.22
HMGA1P17096 RNU6-972P-201ENST00000391208 107 ntBASIC-5.08□□□□□ -3.22
HMGA1P17096 RNU6-916P-201ENST00000516088 109 ntBASIC-5.08□□□□□ -3.22
HMGA1P17096 RNY4P14-201ENST00000363656 96 ntBASIC-5.1□□□□□ -3.23
HMGA1P17096 MIR1252-201ENST00000408861 65 ntBASIC-5.1□□□□□ -3.23
HMGA1P17096 RNU6-537P-201ENST00000517277 103 ntBASIC-5.1□□□□□ -3.23
HMGA1P17096 AC090582.1-201ENST00000636321 199 ntBASIC-5.1□□□□□ -3.23
HMGA1P17096 RNU6-823P-201ENST00000391042 103 ntBASIC-5.11□□□□□ -3.23
HMGA1P17096 RNU6-182P-201ENST00000516970 105 ntBASIC-5.11□□□□□ -3.23
HMGA1P17096 Y_RNA.218-201ENST00000364218 104 ntBASIC-5.12□□□□□ -3.23
HMGA1P17096 RNU6-1043P-201ENST00000410355 99 ntBASIC-5.12□□□□□ -3.23
HMGA1P17096 MIR1302-6-201ENST00000408466 90 ntBASIC-5.13□□□□□ -3.23
HMGA1P17096 MIR4643-201ENST00000577473 78 ntBASIC-5.13□□□□□ -3.23
HMGA1P17096 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC-5.13□□□□□ -3.23
HMGA1P17096 SNORD116-10-201ENST00000363791 102 ntBASIC-5.14□□□□□ -3.23
HMGA1P17096 Y_RNA.573-201ENST00000384763 105 ntBASIC-5.14□□□□□ -3.23
HMGA1P17096 RNU6-789P-201ENST00000517105 102 ntBASIC-5.14□□□□□ -3.23
HMGA1P17096 AC113139.1-201ENST00000605049 239 ntBASIC-5.14□□□□□ -3.23
HMGA1P17096 MIR545-201ENST00000385085 106 ntBASIC-5.15□□□□□ -3.23
HMGA1P17096 SNORD115.2-201ENST00000391126 59 ntBASIC-5.15□□□□□ -3.23
HMGA1P17096 SNORD116.2-201ENST00000391251 93 ntBASIC-5.15□□□□□ -3.23
HMGA1P17096 SNORA40B-201ENST00000385573 128 ntBASIC-5.16□□□□□ -3.24
HMGA1P17096 Y_RNA.645-201ENST00000391229 102 ntBASIC-5.16□□□□□ -3.24
HMGA1P17096 RNU4-40P-201ENST00000364351 143 ntBASIC-5.17□□□□□ -3.24
HMGA1P17096 TMSB4XP3-201ENST00000445144 114 ntBASIC-5.17□□□□□ -3.24
HMGA1P17096 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC-5.17□□□□□ -3.24
HMGA1P17096 RNU6-231P-201ENST00000517122 103 ntBASIC-5.17□□□□□ -3.24
HMGA1P17096 SNORD113.1-201ENST00000363280 73 ntBASIC-5.18□□□□□ -3.24
HMGA1P17096 RNU6-303P-201ENST00000517091 106 ntBASIC-5.18□□□□□ -3.24
HMGA1P17096 DNAJC19P2-201ENST00000593340 302 ntBASIC-5.18□□□□□ -3.24
HMGA1P17096 Y_RNA.210-201ENST00000364161 110 ntBASIC-5.19□□□□□ -3.24
HMGA1P17096 RNU6-506P-201ENST00000516553 94 ntBASIC-5.19□□□□□ -3.24
HMGA1P17096 U6.104-201ENST00000637979 90 ntBASIC-5.19□□□□□ -3.24
HMGA1P17096 MIR519C-201ENST00000385053 87 ntBASIC-5.2□□□□□ -3.24
HMGA1P17096 Y_RNA.96-201ENST00000363092 109 ntBASIC-5.21□□□□□ -3.24
HMGA1P17096 Y_RNA.187-201ENST00000363918 113 ntBASIC-5.21□□□□□ -3.24
HMGA1P17096 RNU6-1143P-201ENST00000516125 104 ntBASIC-5.21□□□□□ -3.24
HMGA1P17096 RNU6-1061P-201ENST00000516530 99 ntBASIC-5.21□□□□□ -3.24
Retrieved 100 of 98,524 protein–RNA pairs in 7.6 ms