Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 RNU6-945P-201ENST00000383947 107 ntBASIC0.99□□□□□ -2.25
RNF40O75150 RNU6-974P-201ENST00000384099 108 ntBASIC0.99□□□□□ -2.25
RNF40O75150 MIR29B1-201ENST00000385015 81 ntBASIC0.99□□□□□ -2.25
RNF40O75150 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.99□□□□□ -2.25
RNF40O75150 MIR532-201ENST00000385025 91 ntBASIC0.98□□□□□ -2.25
RNF40O75150 RPL39P28-201ENST00000465655 155 ntBASIC0.98□□□□□ -2.25
RNF40O75150 MIR5000-201ENST00000577717 103 ntBASIC0.98□□□□□ -2.25
RNF40O75150 MIR6857-201ENST00000613267 93 ntBASIC0.98□□□□□ -2.25
RNF40O75150 snoR1.1-201ENST00000628177 80 ntBASIC0.98□□□□□ -2.25
RNF40O75150 SNORD44.1-201ENST00000363202 61 ntBASIC0.97□□□□□ -2.25
RNF40O75150 RNU7-88P-201ENST00000458752 63 ntBASIC0.97□□□□□ -2.25
RNF40O75150 RNU7-129P-201ENST00000516128 62 ntBASIC0.97□□□□□ -2.25
RNF40O75150 CYP3A137P-201ENST00000562436 69 ntBASIC0.97□□□□□ -2.25
RNF40O75150 SNORD63.1-201ENST00000516178 80 ntBASIC0.96□□□□□ -2.26
RNF40O75150 AL391099.1-201ENST00000624635 187 ntBASIC0.96□□□□□ -2.26
RNF40O75150 MIR4698-201ENST00000577795 80 ntBASIC0.95□□□□□ -2.26
RNF40O75150 RNU6-973P-201ENST00000364690 107 ntBASIC0.94□□□□□ -2.26
RNF40O75150 SNORA62.4-201ENST00000365504 151 ntBASIC0.94□□□□□ -2.26
RNF40O75150 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
RNF40O75150 RNU6-724P-201ENST00000390958 105 ntBASIC0.94□□□□□ -2.26
RNF40O75150 PSMC1P5-201ENST00000512850 177 ntBASIC0.94□□□□□ -2.26
RNF40O75150 AC096531.1-201ENST00000419107 107 ntBASIC0.93□□□□□ -2.26
RNF40O75150 RNU6-1204P-201ENST00000363948 107 ntBASIC0.92□□□□□ -2.26
RNF40O75150 AC108740.1-201ENST00000498629 225 ntBASIC0.92□□□□□ -2.26
RNF40O75150 MIR3170-201ENST00000582699 77 ntBASIC0.92□□□□□ -2.26
RNF40O75150 uc_338.17-201ENST00000619633 179 ntBASIC0.92□□□□□ -2.26
RNF40O75150 RNA5SP325-201ENST00000363756 130 ntBASIC0.91□□□□□ -2.26
RNF40O75150 MIR146A-201ENST00000385201 99 ntBASIC0.91□□□□□ -2.26
RNF40O75150 MIR548H4-201ENST00000408689 111 ntBASIC0.91□□□□□ -2.26
RNF40O75150 SNORD114-2-201ENST00000363953 78 ntBASIC0.9□□□□□ -2.27
RNF40O75150 AC104408.1-201ENST00000605241 170 ntBASIC0.9□□□□□ -2.27
RNF40O75150 RNU6-127P-201ENST00000390897 107 ntBASIC0.89□□□□□ -2.27
RNF40O75150 Y_RNA.613-201ENST00000410726 97 ntBASIC0.89□□□□□ -2.27
RNF40O75150 MIR4714-201ENST00000580728 77 ntBASIC0.88□□□□□ -2.27
RNF40O75150 uc_338.36-201ENST00000622331 158 ntBASIC0.88□□□□□ -2.27
RNF40O75150 SNORD45.2-201ENST00000363552 72 ntBASIC0.87□□□□□ -2.27
RNF40O75150 RNU6-900P-201ENST00000384498 102 ntBASIC0.87□□□□□ -2.27
RNF40O75150 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.87□□□□□ -2.27
RNF40O75150 SNORA68.3-201ENST00000515906 83 ntBASIC0.87□□□□□ -2.27
RNF40O75150 SNORD63.2-201ENST00000516303 64 ntBASIC0.87□□□□□ -2.27
RNF40O75150 RN7SL793P-201ENST00000583259 296 ntBASIC0.87□□□□□ -2.27
RNF40O75150 MIR103A1-201ENST00000362165 78 ntBASIC0.86□□□□□ -2.27
RNF40O75150 RNU6-742P-201ENST00000365289 107 ntBASIC0.86□□□□□ -2.27
RNF40O75150 MIR216A-201ENST00000385063 110 ntBASIC0.86□□□□□ -2.27
RNF40O75150 RNU6-351P-201ENST00000516097 100 ntBASIC0.86□□□□□ -2.27
RNF40O75150 RNU6ATAC14P-201ENST00000516218 91 ntBASIC0.86□□□□□ -2.27
RNF40O75150 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
RNF40O75150 MIR548H2-201ENST00000408874 88 ntBASIC0.85□□□□□ -2.27
RNF40O75150 RNU6-1133P-201ENST00000410963 100 ntBASIC0.85□□□□□ -2.27
RNF40O75150 RNU6-732P-201ENST00000516033 103 ntBASIC0.85□□□□□ -2.27
RNF40O75150 RNU6-822P-201ENST00000362707 106 ntBASIC0.84□□□□□ -2.27
RNF40O75150 RNU6-721P-201ENST00000410155 105 ntBASIC0.83□□□□□ -2.28
RNF40O75150 Y_RNA.321-201ENST00000365149 102 ntBASIC0.82□□□□□ -2.28
RNF40O75150 RNU6-59P-201ENST00000384787 107 ntBASIC0.82□□□□□ -2.28
RNF40O75150 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.82□□□□□ -2.28
RNF40O75150 MIR4653-201ENST00000585107 83 ntBASIC0.82□□□□□ -2.28
RNF40O75150 MIR6514-201ENST00000622549 70 ntBASIC0.82□□□□□ -2.28
RNF40O75150 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.81□□□□□ -2.28
RNF40O75150 RNU6-1238P-201ENST00000517215 102 ntBASIC0.81□□□□□ -2.28
RNF40O75150 MIR5704-201ENST00000584029 77 ntBASIC0.81□□□□□ -2.28
RNF40O75150 MIR8068-201ENST00000618032 68 ntBASIC0.81□□□□□ -2.28
RNF40O75150 SNORA42.1-201ENST00000363515 137 ntBASIC0.8□□□□□ -2.28
RNF40O75150 RNU6-258P-201ENST00000390884 101 ntBASIC0.8□□□□□ -2.28
RNF40O75150 CR383656.4-201ENST00000546909 122 ntBASIC0.8□□□□□ -2.28
RNF40O75150 MIR6507-201ENST00000613630 70 ntBASIC0.8□□□□□ -2.28
RNF40O75150 MIRLET7D-201ENST00000362263 87 ntBASIC0.79□□□□□ -2.28
RNF40O75150 RNU6-815P-201ENST00000384080 113 ntBASIC0.79□□□□□ -2.28
RNF40O75150 RNU6-455P-201ENST00000384681 107 ntBASIC0.79□□□□□ -2.28
RNF40O75150 MIR6835-201ENST00000621552 64 ntBASIC0.79□□□□□ -2.28
RNF40O75150 MIR148A-201ENST00000362215 68 ntBASIC0.78□□□□□ -2.28
RNF40O75150 MIR508-201ENST00000384857 115 ntBASIC0.78□□□□□ -2.28
RNF40O75150 MIR520D-201ENST00000385002 87 ntBASIC0.78□□□□□ -2.28
RNF40O75150 RNU6-1111P-201ENST00000391118 107 ntBASIC0.78□□□□□ -2.28
RNF40O75150 RNU6-530P-201ENST00000391180 107 ntBASIC0.78□□□□□ -2.28
RNF40O75150 MIR6513-201ENST00000621188 64 ntBASIC0.78□□□□□ -2.28
RNF40O75150 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.77□□□□□ -2.29
RNF40O75150 MIR6866-201ENST00000638146 69 ntBASIC0.77□□□□□ -2.29
RNF40O75150 RNU6-1008P-201ENST00000384160 104 ntBASIC0.76□□□□□ -2.29
RNF40O75150 RNU6-180P-201ENST00000516697 61 ntBASIC0.76□□□□□ -2.29
RNF40O75150 U6.103-201ENST00000637085 61 ntBASIC0.76□□□□□ -2.29
RNF40O75150 SNORD56B-201ENST00000384713 71 ntBASIC0.74□□□□□ -2.29
RNF40O75150 SNORD19-201ENST00000391191 68 ntBASIC0.74□□□□□ -2.29
RNF40O75150 MIR6854-201ENST00000614935 69 ntBASIC0.74□□□□□ -2.29
RNF40O75150 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.73□□□□□ -2.29
RNF40O75150 MIR643-201ENST00000385267 97 ntBASIC0.73□□□□□ -2.29
RNF40O75150 MIR936-201ENST00000401264 98 ntBASIC0.73□□□□□ -2.29
RNF40O75150 MIR1468-201ENST00000410600 86 ntBASIC0.73□□□□□ -2.29
RNF40O75150 MIR193B-201ENST00000384907 83 ntBASIC0.72□□□□□ -2.29
RNF40O75150 AC114755.3-201ENST00000481111 251 ntBASIC0.72□□□□□ -2.29
RNF40O75150 AC069113.3-201ENST00000521019 150 ntBASIC0.72□□□□□ -2.29
RNF40O75150 RNA5SP163-201ENST00000410304 99 ntBASIC0.7□□□□□ -2.3
RNF40O75150 RNA5SP62-201ENST00000363457 110 ntBASIC0.69□□□□□ -2.3
RNF40O75150 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.68□□□□□ -2.3
RNF40O75150 SNORD114-23-201ENST00000363536 72 ntBASIC0.68□□□□□ -2.3
RNF40O75150 AC244250.2-201ENST00000418731 148 ntBASIC0.68□□□□□ -2.3
RNF40O75150 MIR1273G-201ENST00000577677 100 ntBASIC0.68□□□□□ -2.3
RNF40O75150 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.68□□□□□ -2.3
RNF40O75150 RNA5SP347-201ENST00000362445 119 ntBASIC0.67□□□□□ -2.3
RNF40O75150 RNU6-1233P-201ENST00000362922 102 ntBASIC0.67□□□□□ -2.3
RNF40O75150 SNORA27.2-201ENST00000363365 126 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 287.6 ms