Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 Y_RNA.125-201ENST00000363371 111 ntBASIC0.52□□□□□ -2.33
CCDC9Q9Y3X0 SNORA2A-201ENST00000383885 135 ntBASIC0.52□□□□□ -2.33
CCDC9Q9Y3X0 HMGN2P22-201ENST00000427588 175 ntBASIC0.52□□□□□ -2.33
CCDC9Q9Y3X0 Y_RNA.633-201ENST00000459107 95 ntBASIC0.52□□□□□ -2.33
CCDC9Q9Y3X0 RNU6-1089P-201ENST00000516473 104 ntBASIC0.52□□□□□ -2.33
CCDC9Q9Y3X0 RNA5SP134-201ENST00000516492 96 ntBASIC0.52□□□□□ -2.33
CCDC9Q9Y3X0 MIR582-201ENST00000365731 98 ntBASIC0.51□□□□□ -2.33
CCDC9Q9Y3X0 MIR9-2-201ENST00000384838 87 ntBASIC0.51□□□□□ -2.33
CCDC9Q9Y3X0 MIR548E-201ENST00000408287 88 ntBASIC0.51□□□□□ -2.33
CCDC9Q9Y3X0 RNU6-302P-201ENST00000365249 107 ntBASIC0.5□□□□□ -2.33
CCDC9Q9Y3X0 RNU6-669P-201ENST00000365575 107 ntBASIC0.5□□□□□ -2.33
CCDC9Q9Y3X0 Y_RNA.423-201ENST00000384057 113 ntBASIC0.5□□□□□ -2.33
CCDC9Q9Y3X0 AC110620.1-201ENST00000416042 228 ntBASIC0.5□□□□□ -2.33
CCDC9Q9Y3X0 AC244090.1-201ENST00000441884 93 ntBASIC0.5□□□□□ -2.33
CCDC9Q9Y3X0 RNU6-848P-201ENST00000515948 107 ntBASIC0.5□□□□□ -2.33
CCDC9Q9Y3X0 RNU6-617P-201ENST00000516147 107 ntBASIC0.5□□□□□ -2.33
CCDC9Q9Y3X0 RNU6-473P-201ENST00000516164 107 ntBASIC0.5□□□□□ -2.33
CCDC9Q9Y3X0 RNU6-1049P-201ENST00000516414 107 ntBASIC0.5□□□□□ -2.33
CCDC9Q9Y3X0 MIR20A-201ENST00000362279 71 ntBASIC0.49□□□□□ -2.33
CCDC9Q9Y3X0 SNORA33.1-201ENST00000364957 130 ntBASIC0.49□□□□□ -2.33
CCDC9Q9Y3X0 RNA5SP299-201ENST00000391203 116 ntBASIC0.49□□□□□ -2.33
CCDC9Q9Y3X0 MIR548C-201ENST00000384815 97 ntBASIC0.48□□□□□ -2.33
CCDC9Q9Y3X0 MIR329-2-201ENST00000385029 84 ntBASIC0.48□□□□□ -2.33
CCDC9Q9Y3X0 SNORD114-29-201ENST00000364819 70 ntBASIC0.47□□□□□ -2.33
CCDC9Q9Y3X0 SNORD2-201ENST00000459163 69 ntBASIC0.47□□□□□ -2.33
CCDC9Q9Y3X0 SCARNA21.1-201ENST00000515996 128 ntBASIC0.47□□□□□ -2.33
CCDC9Q9Y3X0 SNORA25.5-201ENST00000363782 126 ntBASIC0.46□□□□□ -2.34
CCDC9Q9Y3X0 MIR516B1-201ENST00000385211 90 ntBASIC0.46□□□□□ -2.34
CCDC9Q9Y3X0 MIR548V-201ENST00000584165 80 ntBASIC0.46□□□□□ -2.34
CCDC9Q9Y3X0 U2.7-201ENST00000619197 100 ntBASIC0.46□□□□□ -2.34
CCDC9Q9Y3X0 MIR6755-201ENST00000619993 66 ntBASIC0.46□□□□□ -2.34
CCDC9Q9Y3X0 U6.96-201ENST00000636425 70 ntBASIC0.46□□□□□ -2.34
CCDC9Q9Y3X0 MIR517B-201ENST00000385102 67 ntBASIC0.45□□□□□ -2.34
CCDC9Q9Y3X0 MIR760-201ENST00000390220 80 ntBASIC0.45□□□□□ -2.34
CCDC9Q9Y3X0 RNU6-1232P-201ENST00000516299 86 ntBASIC0.45□□□□□ -2.34
CCDC9Q9Y3X0 RNU6-499P-201ENST00000365615 107 ntBASIC0.44□□□□□ -2.34
CCDC9Q9Y3X0 MIR501-201ENST00000390204 84 ntBASIC0.44□□□□□ -2.34
CCDC9Q9Y3X0 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.44□□□□□ -2.34
CCDC9Q9Y3X0 AC108740.1-201ENST00000498629 225 ntBASIC0.44□□□□□ -2.34
CCDC9Q9Y3X0 RNU7-188P-201ENST00000517063 64 ntBASIC0.44□□□□□ -2.34
CCDC9Q9Y3X0 MIR4802-201ENST00000581881 80 ntBASIC0.44□□□□□ -2.34
CCDC9Q9Y3X0 MIR4677-201ENST00000584153 80 ntBASIC0.44□□□□□ -2.34
CCDC9Q9Y3X0 MIR6718-201ENST00000616153 80 ntBASIC0.44□□□□□ -2.34
CCDC9Q9Y3X0 RNU6-698P-201ENST00000363523 107 ntBASIC0.43□□□□□ -2.34
CCDC9Q9Y3X0 RNA5SP192-201ENST00000364404 120 ntBASIC0.43□□□□□ -2.34
CCDC9Q9Y3X0 RNU6-34P-201ENST00000364874 107 ntBASIC0.43□□□□□ -2.34
CCDC9Q9Y3X0 RNA5SP128-201ENST00000365305 116 ntBASIC0.43□□□□□ -2.34
CCDC9Q9Y3X0 RNU7-174P-201ENST00000516248 59 ntBASIC0.43□□□□□ -2.34
CCDC9Q9Y3X0 MIR548AD-201ENST00000584780 82 ntBASIC0.43□□□□□ -2.34
CCDC9Q9Y3X0 RNU6-92P-201ENST00000605893 104 ntBASIC0.43□□□□□ -2.34
CCDC9Q9Y3X0 AC084368.1-201ENST00000620935 65 ntBASIC0.43□□□□□ -2.34
CCDC9Q9Y3X0 RNU6-940P-201ENST00000363433 104 ntBASIC0.42□□□□□ -2.34
CCDC9Q9Y3X0 MIR630-201ENST00000384957 97 ntBASIC0.42□□□□□ -2.34
CCDC9Q9Y3X0 SNORD113-2-201ENST00000391082 72 ntBASIC0.42□□□□□ -2.34
CCDC9Q9Y3X0 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.42□□□□□ -2.34
CCDC9Q9Y3X0 CYP3A54P-201ENST00000566950 75 ntBASIC0.42□□□□□ -2.34
CCDC9Q9Y3X0 MIR5589-201ENST00000579442 60 ntBASIC0.42□□□□□ -2.34
CCDC9Q9Y3X0 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.42□□□□□ -2.34
CCDC9Q9Y3X0 SNORA9.1-201ENST00000362412 131 ntBASIC0.41□□□□□ -2.34
CCDC9Q9Y3X0 RNU6-815P-201ENST00000384080 113 ntBASIC0.4□□□□□ -2.35
CCDC9Q9Y3X0 AL021921.1-201ENST00000442774 93 ntBASIC0.4□□□□□ -2.35
CCDC9Q9Y3X0 RNU7-129P-201ENST00000516128 62 ntBASIC0.4□□□□□ -2.35
CCDC9Q9Y3X0 RNU6-175P-201ENST00000516896 107 ntBASIC0.4□□□□□ -2.35
CCDC9Q9Y3X0 AC069113.3-201ENST00000521019 150 ntBASIC0.4□□□□□ -2.35
CCDC9Q9Y3X0 MIR466-201ENST00000580653 84 ntBASIC0.4□□□□□ -2.35
CCDC9Q9Y3X0 RNU6-122P-201ENST00000516818 107 ntBASIC0.39□□□□□ -2.35
CCDC9Q9Y3X0 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.39□□□□□ -2.35
CCDC9Q9Y3X0 U4.4-201ENST00000620626 117 ntBASIC0.39□□□□□ -2.35
CCDC9Q9Y3X0 Y_RNA.246-201ENST00000364495 108 ntBASIC0.38□□□□□ -2.35
CCDC9Q9Y3X0 RNU6-1036P-201ENST00000383959 104 ntBASIC0.38□□□□□ -2.35
CCDC9Q9Y3X0 SNORA49-201ENST00000386157 136 ntBASIC0.38□□□□□ -2.35
CCDC9Q9Y3X0 MIR876-201ENST00000401147 81 ntBASIC0.38□□□□□ -2.35
CCDC9Q9Y3X0 MIR6773-201ENST00000612812 74 ntBASIC0.38□□□□□ -2.35
CCDC9Q9Y3X0 AC090617.8-201ENST00000623339 167 ntBASIC0.38□□□□□ -2.35
CCDC9Q9Y3X0 MIR499B-201ENST00000636498 73 ntBASIC0.38□□□□□ -2.35
CCDC9Q9Y3X0 SNORD60.1-201ENST00000362451 73 ntBASIC0.37□□□□□ -2.35
CCDC9Q9Y3X0 MIR633-201ENST00000384821 98 ntBASIC0.37□□□□□ -2.35
CCDC9Q9Y3X0 SNORA75.1-201ENST00000391130 148 ntBASIC0.37□□□□□ -2.35
CCDC9Q9Y3X0 MIR1255B2-201ENST00000408618 67 ntBASIC0.37□□□□□ -2.35
CCDC9Q9Y3X0 RNU6-518P-201ENST00000516056 96 ntBASIC0.37□□□□□ -2.35
CCDC9Q9Y3X0 MIR3925-201ENST00000584674 77 ntBASIC0.37□□□□□ -2.35
CCDC9Q9Y3X0 RN7SL660P-201ENST00000614852 299 ntBASIC0.37□□□□□ -2.35
CCDC9Q9Y3X0 MIR4315-1-201ENST00000636800 73 ntBASIC0.37□□□□□ -2.35
CCDC9Q9Y3X0 MIR4315-2-201ENST00000640925 73 ntBASIC0.37□□□□□ -2.35
CCDC9Q9Y3X0 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.36□□□□□ -2.35
CCDC9Q9Y3X0 RNU6-337P-201ENST00000391243 106 ntBASIC0.36□□□□□ -2.35
CCDC9Q9Y3X0 MTND4LP19-201ENST00000403051 166 ntBASIC0.36□□□□□ -2.35
CCDC9Q9Y3X0 RNU6-502P-201ENST00000362419 108 ntBASIC0.35□□□□□ -2.35
CCDC9Q9Y3X0 SNORD115-25-201ENST00000362619 82 ntBASIC0.35□□□□□ -2.35
CCDC9Q9Y3X0 RNU6-1079P-201ENST00000362861 110 ntBASIC0.35□□□□□ -2.35
CCDC9Q9Y3X0 AC079150.2-201ENST00000443733 78 ntBASIC0.35□□□□□ -2.35
CCDC9Q9Y3X0 SCARNA11.2-201ENST00000517183 154 ntBASIC0.35□□□□□ -2.35
CCDC9Q9Y3X0 MIR5190-201ENST00000581537 80 ntBASIC0.35□□□□□ -2.35
CCDC9Q9Y3X0 MIR3938-201ENST00000582157 103 ntBASIC0.35□□□□□ -2.35
CCDC9Q9Y3X0 AL627230.5-201ENST00000619807 58 ntBASIC0.35□□□□□ -2.35
CCDC9Q9Y3X0 MIR106A-201ENST00000384870 81 ntBASIC0.34□□□□□ -2.36
CCDC9Q9Y3X0 MIR519A2-201ENST00000384990 87 ntBASIC0.34□□□□□ -2.36
CCDC9Q9Y3X0 MIRLET7B-201ENST00000385140 83 ntBASIC0.34□□□□□ -2.36
CCDC9Q9Y3X0 RNA5SP470-201ENST00000516463 106 ntBASIC0.34□□□□□ -2.36
CCDC9Q9Y3X0 Y_RNA.74-201ENST00000362911 99 ntBASIC0.33□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 235.7 ms