Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MIR6739-201ENST00000622461 75 ntBASIC0.24□□□□□ -2.37
CCDC140Q96MF4 MIR6514-201ENST00000622549 70 ntBASIC0.24□□□□□ -2.37
CCDC140Q96MF4 MIR521-2-201ENST00000384818 87 ntBASIC0.23□□□□□ -2.37
CCDC140Q96MF4 RNU6-881P-201ENST00000516813 102 ntBASIC0.23□□□□□ -2.37
CCDC140Q96MF4 MIR4514-201ENST00000581410 57 ntBASIC0.23□□□□□ -2.37
CCDC140Q96MF4 RNU6-1296P-201ENST00000383879 107 ntBASIC0.22□□□□□ -2.37
CCDC140Q96MF4 SNORA49-201ENST00000386157 136 ntBASIC0.22□□□□□ -2.37
CCDC140Q96MF4 RNU6-656P-201ENST00000516785 107 ntBASIC0.22□□□□□ -2.37
CCDC140Q96MF4 AP000676.1-201ENST00000533307 52 ntBASIC0.22□□□□□ -2.37
CCDC140Q96MF4 MIR548H2-201ENST00000408874 88 ntBASIC0.21□□□□□ -2.38
CCDC140Q96MF4 MIR548C-201ENST00000384815 97 ntBASIC0.2□□□□□ -2.38
CCDC140Q96MF4 MIR892B-201ENST00000401279 77 ntBASIC0.2□□□□□ -2.38
CCDC140Q96MF4 RNU6-871P-201ENST00000516122 100 ntBASIC0.2□□□□□ -2.38
CCDC140Q96MF4 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.2□□□□□ -2.38
CCDC140Q96MF4 SNORD114-5-201ENST00000362928 70 ntBASIC0.19□□□□□ -2.38
CCDC140Q96MF4 MIR145-201ENST00000384967 88 ntBASIC0.19□□□□□ -2.38
CCDC140Q96MF4 MTND4LP1-201ENST00000446263 157 ntBASIC0.19□□□□□ -2.38
CCDC140Q96MF4 AC023932.2-201ENST00000603176 175 ntBASIC0.19□□□□□ -2.38
CCDC140Q96MF4 SNORD115-25-201ENST00000362619 82 ntBASIC0.18□□□□□ -2.38
CCDC140Q96MF4 RNA5SP257-201ENST00000363023 116 ntBASIC0.18□□□□□ -2.38
CCDC140Q96MF4 SNORD114-9-201ENST00000364370 72 ntBASIC0.18□□□□□ -2.38
CCDC140Q96MF4 RNU6-634P-201ENST00000459134 106 ntBASIC0.18□□□□□ -2.38
CCDC140Q96MF4 RNU6-1216P-201ENST00000362590 107 ntBASIC0.17□□□□□ -2.38
CCDC140Q96MF4 RNA5SP98-201ENST00000363158 137 ntBASIC0.17□□□□□ -2.38
CCDC140Q96MF4 RNA5SP63-201ENST00000391225 112 ntBASIC0.17□□□□□ -2.38
CCDC140Q96MF4 MIR5093-201ENST00000583199 100 ntBASIC0.17□□□□□ -2.38
CCDC140Q96MF4 RNU6-668P-201ENST00000364180 107 ntBASIC0.16□□□□□ -2.38
CCDC140Q96MF4 RNU6-180P-201ENST00000516697 61 ntBASIC0.16□□□□□ -2.38
CCDC140Q96MF4 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.16□□□□□ -2.38
CCDC140Q96MF4 SNORA42.1-201ENST00000363515 137 ntBASIC0.15□□□□□ -2.39
CCDC140Q96MF4 RNU6-540P-201ENST00000384622 101 ntBASIC0.15□□□□□ -2.39
CCDC140Q96MF4 SNORD30.1-201ENST00000391309 70 ntBASIC0.15□□□□□ -2.39
CCDC140Q96MF4 CR383656.4-201ENST00000546909 122 ntBASIC0.15□□□□□ -2.39
CCDC140Q96MF4 CYP3A54P-201ENST00000566950 75 ntBASIC0.15□□□□□ -2.39
CCDC140Q96MF4 MIR6773-201ENST00000612812 74 ntBASIC0.15□□□□□ -2.39
CCDC140Q96MF4 AC090617.8-201ENST00000623339 167 ntBASIC0.15□□□□□ -2.39
CCDC140Q96MF4 MIR2909-201ENST00000617113 69 ntBASIC0.14□□□□□ -2.39
CCDC140Q96MF4 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.13□□□□□ -2.39
CCDC140Q96MF4 RNU6-663P-201ENST00000391105 106 ntBASIC0.13□□□□□ -2.39
CCDC140Q96MF4 RNA5SP299-201ENST00000391203 116 ntBASIC0.13□□□□□ -2.39
CCDC140Q96MF4 RNU6-337P-201ENST00000391243 106 ntBASIC0.13□□□□□ -2.39
CCDC140Q96MF4 RNU7-159P-201ENST00000459284 62 ntBASIC0.13□□□□□ -2.39
CCDC140Q96MF4 RNU6-502P-201ENST00000362419 108 ntBASIC0.11□□□□□ -2.39
CCDC140Q96MF4 Y_RNA.68-201ENST00000362881 102 ntBASIC0.11□□□□□ -2.39
CCDC140Q96MF4 RNU6-649P-201ENST00000384463 107 ntBASIC0.11□□□□□ -2.39
CCDC140Q96MF4 MIR1295A-201ENST00000408463 79 ntBASIC0.11□□□□□ -2.39
CCDC140Q96MF4 MIR4743-201ENST00000584576 69 ntBASIC0.11□□□□□ -2.39
CCDC140Q96MF4 MIR6718-201ENST00000616153 80 ntBASIC0.11□□□□□ -2.39
CCDC140Q96MF4 SNORD116-24-201ENST00000384549 92 ntBASIC0.1□□□□□ -2.39
CCDC140Q96MF4 MIR1255B2-201ENST00000408618 67 ntBASIC0.1□□□□□ -2.39
CCDC140Q96MF4 RNU7-165P-201ENST00000458864 60 ntBASIC0.1□□□□□ -2.39
CCDC140Q96MF4 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.1□□□□□ -2.39
CCDC140Q96MF4 RNU6-1089P-201ENST00000516473 104 ntBASIC0.1□□□□□ -2.39
CCDC140Q96MF4 MIR6507-201ENST00000613630 70 ntBASIC0.09□□□□□ -2.4
CCDC140Q96MF4 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.08□□□□□ -2.4
CCDC140Q96MF4 RNU6-929P-201ENST00000384429 107 ntBASIC0.07□□□□□ -2.4
CCDC140Q96MF4 uc_338.36-201ENST00000622331 158 ntBASIC0.07□□□□□ -2.4
CCDC140Q96MF4 MIR148A-201ENST00000362215 68 ntBASIC0.06□□□□□ -2.4
CCDC140Q96MF4 RNU6-455P-201ENST00000384681 107 ntBASIC0.06□□□□□ -2.4
CCDC140Q96MF4 RNU6-630P-201ENST00000391258 106 ntBASIC0.06□□□□□ -2.4
CCDC140Q96MF4 MIR5190-201ENST00000581537 80 ntBASIC0.06□□□□□ -2.4
CCDC140Q96MF4 MIR548V-201ENST00000584165 80 ntBASIC0.06□□□□□ -2.4
CCDC140Q96MF4 MIRLET7B-201ENST00000385140 83 ntBASIC0.05□□□□□ -2.4
CCDC140Q96MF4 U2.7-201ENST00000619197 100 ntBASIC0.05□□□□□ -2.4
CCDC140Q96MF4 RNA5SP285-201ENST00000516619 119 ntBASIC0.04□□□□□ -2.4
CCDC140Q96MF4 MIR4768-201ENST00000585270 74 ntBASIC0.04□□□□□ -2.4
CCDC140Q96MF4 Y_RNA.433-201ENST00000384089 102 ntBASIC0.03□□□□□ -2.4
CCDC140Q96MF4 snoR1.1-201ENST00000628177 80 ntBASIC0.03□□□□□ -2.4
CCDC140Q96MF4 RNU6-518P-201ENST00000516056 96 ntBASIC0.02□□□□□ -2.41
CCDC140Q96MF4 Y_RNA.443-201ENST00000384135 111 ntBASIC0.01□□□□□ -2.41
CCDC140Q96MF4 RNU6-1133P-201ENST00000410963 100 ntBASIC0.01□□□□□ -2.41
CCDC140Q96MF4 AC114801.3-201ENST00000510231 177 ntBASIC0.01□□□□□ -2.41
CCDC140Q96MF4 U6.111-201ENST00000636093 83 ntBASIC0.01□□□□□ -2.41
CCDC140Q96MF4 Y_RNA.178-201ENST00000363832 102 ntBASIC0□□□□□ -2.41
CCDC140Q96MF4 MIR329-2-201ENST00000385029 84 ntBASIC0□□□□□ -2.41
CCDC140Q96MF4 MIR517B-201ENST00000385102 67 ntBASIC0□□□□□ -2.41
CCDC140Q96MF4 AC244250.2-201ENST00000418731 148 ntBASIC0□□□□□ -2.41
CCDC140Q96MF4 RNU6-539P-201ENST00000516665 103 ntBASIC0□□□□□ -2.41
CCDC140Q96MF4 MIR371B-201ENST00000638082 66 ntBASIC0□□□□□ -2.41
CCDC140Q96MF4 RNU6-900P-201ENST00000384498 102 ntBASIC-0.01□□□□□ -2.41
CCDC140Q96MF4 MIR519A2-201ENST00000384990 87 ntBASIC-0.01□□□□□ -2.41
CCDC140Q96MF4 MIR4667-201ENST00000578933 66 ntBASIC-0.01□□□□□ -2.41
CCDC140Q96MF4 RNA5SP215-201ENST00000363440 122 ntBASIC-0.02□□□□□ -2.41
CCDC140Q96MF4 MIR9-2-201ENST00000384838 87 ntBASIC-0.02□□□□□ -2.41
CCDC140Q96MF4 MIR630-201ENST00000384957 97 ntBASIC-0.02□□□□□ -2.41
CCDC140Q96MF4 AL021921.1-201ENST00000442774 93 ntBASIC-0.02□□□□□ -2.41
CCDC140Q96MF4 MIR4290-201ENST00000583807 95 ntBASIC-0.02□□□□□ -2.41
CCDC140Q96MF4 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.03□□□□□ -2.41
CCDC140Q96MF4 RNA5SP470-201ENST00000516463 106 ntBASIC-0.03□□□□□ -2.41
CCDC140Q96MF4 SNORD114-16-201ENST00000363044 70 ntBASIC-0.04□□□□□ -2.42
CCDC140Q96MF4 RNU6-800P-201ENST00000384473 103 ntBASIC-0.04□□□□□ -2.42
CCDC140Q96MF4 RNU6-901P-201ENST00000384593 106 ntBASIC-0.04□□□□□ -2.42
CCDC140Q96MF4 RNU7-55P-201ENST00000459426 62 ntBASIC-0.04□□□□□ -2.42
CCDC140Q96MF4 RNU7-174P-201ENST00000516248 59 ntBASIC-0.04□□□□□ -2.42
CCDC140Q96MF4 MIR4432-201ENST00000581823 84 ntBASIC-0.04□□□□□ -2.42
CCDC140Q96MF4 AL391099.1-201ENST00000624635 187 ntBASIC-0.04□□□□□ -2.42
CCDC140Q96MF4 MIR6759-201ENST00000638110 65 ntBASIC-0.04□□□□□ -2.42
CCDC140Q96MF4 AC005520.4-201ENST00000604337 90 ntBASIC-0.05□□□□□ -2.42
CCDC140Q96MF4 SNORA25.4-201ENST00000363666 124 ntBASIC-0.06□□□□□ -2.42
CCDC140Q96MF4 SNORD49B-201ENST00000365172 72 ntBASIC-0.06□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 174.9 ms