Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 RNU6-1049P-201ENST00000516414 107 ntBASIC0.62□□□□□ -2.31
COL4A3Q01955 IGLVI-20-201ENST00000519296 130 ntBASIC0.62□□□□□ -2.31
COL4A3Q01955 MIR20A-201ENST00000362279 71 ntBASIC0.62□□□□□ -2.31
COL4A3Q01955 Y_RNA.633-201ENST00000459107 95 ntBASIC0.62□□□□□ -2.31
COL4A3Q01955 RNU6-1089P-201ENST00000516473 104 ntBASIC0.62□□□□□ -2.31
COL4A3Q01955 U7.6-201ENST00000610841 64 ntBASIC0.62□□□□□ -2.31
COL4A3Q01955 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.62□□□□□ -2.31
COL4A3Q01955 AC103706.3-201ENST00000636297 85 ntBASIC0.62□□□□□ -2.31
COL4A3Q01955 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.61□□□□□ -2.31
COL4A3Q01955 MIR4511-201ENST00000582784 87 ntBASIC0.61□□□□□ -2.31
COL4A3Q01955 RNU1-29P-201ENST00000606574 126 ntBASIC0.61□□□□□ -2.31
COL4A3Q01955 RNU4-54P-201ENST00000516428 129 ntBASIC0.6□□□□□ -2.31
COL4A3Q01955 MIR516B1-201ENST00000385211 90 ntBASIC0.59□□□□□ -2.31
COL4A3Q01955 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.59□□□□□ -2.31
COL4A3Q01955 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.59□□□□□ -2.32
COL4A3Q01955 Y_RNA.375-201ENST00000365625 101 ntBASIC0.59□□□□□ -2.32
COL4A3Q01955 AC021146.9-201ENST00000512503 156 ntBASIC0.58□□□□□ -2.32
COL4A3Q01955 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.57□□□□□ -2.32
COL4A3Q01955 MIR548E-201ENST00000408287 88 ntBASIC0.57□□□□□ -2.32
COL4A3Q01955 AC244090.1-201ENST00000441884 93 ntBASIC0.57□□□□□ -2.32
COL4A3Q01955 RNU6-1232P-201ENST00000516299 86 ntBASIC0.57□□□□□ -2.32
COL4A3Q01955 RNA5SP67-201ENST00000516422 131 ntBASIC0.57□□□□□ -2.32
COL4A3Q01955 MIR6755-201ENST00000619993 66 ntBASIC0.57□□□□□ -2.32
COL4A3Q01955 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
COL4A3Q01955 SNORD114-29-201ENST00000364819 70 ntBASIC0.56□□□□□ -2.32
COL4A3Q01955 MIR9-2-201ENST00000384838 87 ntBASIC0.56□□□□□ -2.32
COL4A3Q01955 SNORD2-201ENST00000459163 69 ntBASIC0.56□□□□□ -2.32
COL4A3Q01955 CYP3A54P-201ENST00000566950 75 ntBASIC0.56□□□□□ -2.32
COL4A3Q01955 SNORA63.6-201ENST00000364921 119 ntBASIC0.56□□□□□ -2.32
COL4A3Q01955 AL157398.1-201ENST00000452981 186 ntBASIC0.56□□□□□ -2.32
COL4A3Q01955 RNU6-863P-201ENST00000515989 104 ntBASIC0.56□□□□□ -2.32
COL4A3Q01955 MIR5087-201ENST00000635826 76 ntBASIC0.56□□□□□ -2.32
COL4A3Q01955 SNORD44.1-201ENST00000363202 61 ntBASIC0.54□□□□□ -2.32
COL4A3Q01955 SNORA33.1-201ENST00000364957 130 ntBASIC0.54□□□□□ -2.32
COL4A3Q01955 MIR582-201ENST00000365731 98 ntBASIC0.54□□□□□ -2.32
COL4A3Q01955 AC110620.1-201ENST00000416042 228 ntBASIC0.54□□□□□ -2.32
COL4A3Q01955 AC108676.2-201ENST00000605225 163 ntBASIC0.54□□□□□ -2.32
COL4A3Q01955 AC084368.1-201ENST00000620935 65 ntBASIC0.54□□□□□ -2.32
COL4A3Q01955 MIR548C-201ENST00000384815 97 ntBASIC0.53□□□□□ -2.32
COL4A3Q01955 MIR92A1-201ENST00000385233 78 ntBASIC0.53□□□□□ -2.32
COL4A3Q01955 MIR4677-201ENST00000584153 80 ntBASIC0.53□□□□□ -2.32
COL4A3Q01955 U6.96-201ENST00000636425 70 ntBASIC0.53□□□□□ -2.32
COL4A3Q01955 MIR760-201ENST00000390220 80 ntBASIC0.53□□□□□ -2.33
COL4A3Q01955 SNORD57-201ENST00000448188 72 ntBASIC0.53□□□□□ -2.33
COL4A3Q01955 RNU7-188P-201ENST00000517063 64 ntBASIC0.53□□□□□ -2.33
COL4A3Q01955 MIR548AD-201ENST00000584780 82 ntBASIC0.53□□□□□ -2.33
COL4A3Q01955 SNX3P1X-201ENST00000414887 175 ntBASIC0.52□□□□□ -2.33
COL4A3Q01955 RNA5SP98-201ENST00000363158 137 ntBASIC0.51□□□□□ -2.33
COL4A3Q01955 SNORA25.5-201ENST00000363782 126 ntBASIC0.51□□□□□ -2.33
COL4A3Q01955 MIR630-201ENST00000384957 97 ntBASIC0.51□□□□□ -2.33
COL4A3Q01955 MIR499B-201ENST00000636498 73 ntBASIC0.51□□□□□ -2.33
COL4A3Q01955 SNORD95.1-201ENST00000364099 68 ntBASIC0.5□□□□□ -2.33
COL4A3Q01955 RNU6-302P-201ENST00000365249 107 ntBASIC0.5□□□□□ -2.33
COL4A3Q01955 RNA5SP128-201ENST00000365305 116 ntBASIC0.5□□□□□ -2.33
COL4A3Q01955 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.5□□□□□ -2.33
COL4A3Q01955 U2.7-201ENST00000619197 100 ntBASIC0.5□□□□□ -2.33
COL4A3Q01955 MIR517B-201ENST00000385102 67 ntBASIC0.49□□□□□ -2.33
COL4A3Q01955 MIR501-201ENST00000390204 84 ntBASIC0.49□□□□□ -2.33
COL4A3Q01955 MIR548V-201ENST00000584165 80 ntBASIC0.49□□□□□ -2.33
COL4A3Q01955 RNU6-945P-201ENST00000383947 107 ntBASIC0.49□□□□□ -2.33
COL4A3Q01955 Y_RNA.610-201ENST00000410681 103 ntBASIC0.49□□□□□ -2.33
COL4A3Q01955 RNU6-175P-201ENST00000516896 107 ntBASIC0.49□□□□□ -2.33
COL4A3Q01955 MIR3925-201ENST00000584674 77 ntBASIC0.49□□□□□ -2.33
COL4A3Q01955 RNU6-940P-201ENST00000363433 104 ntBASIC0.48□□□□□ -2.33
COL4A3Q01955 RNU6-698P-201ENST00000363523 107 ntBASIC0.47□□□□□ -2.33
COL4A3Q01955 Y_RNA.185-201ENST00000363894 100 ntBASIC0.47□□□□□ -2.33
COL4A3Q01955 RNA5SP192-201ENST00000364404 120 ntBASIC0.47□□□□□ -2.33
COL4A3Q01955 RNU6-34P-201ENST00000364874 107 ntBASIC0.47□□□□□ -2.33
COL4A3Q01955 SNORA50A-201ENST00000384225 134 ntBASIC0.47□□□□□ -2.33
COL4A3Q01955 MIR601-201ENST00000385256 79 ntBASIC0.47□□□□□ -2.33
COL4A3Q01955 MIR6718-201ENST00000616153 80 ntBASIC0.47□□□□□ -2.33
COL4A3Q01955 RNU6-499P-201ENST00000365615 107 ntBASIC0.46□□□□□ -2.34
COL4A3Q01955 RNU7-174P-201ENST00000516248 59 ntBASIC0.46□□□□□ -2.34
COL4A3Q01955 RN7SL660P-201ENST00000614852 299 ntBASIC0.46□□□□□ -2.34
COL4A3Q01955 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
COL4A3Q01955 MIR103A1-201ENST00000362165 78 ntBASIC0.46□□□□□ -2.34
COL4A3Q01955 SNORD113-2-201ENST00000391082 72 ntBASIC0.46□□□□□ -2.34
COL4A3Q01955 RNU6-92P-201ENST00000605893 104 ntBASIC0.46□□□□□ -2.34
COL4A3Q01955 RNU6-337P-201ENST00000391243 106 ntBASIC0.45□□□□□ -2.34
COL4A3Q01955 MIR1255B2-201ENST00000408618 67 ntBASIC0.45□□□□□ -2.34
COL4A3Q01955 AC114737.2-201ENST00000421583 173 ntBASIC0.45□□□□□ -2.34
COL4A3Q01955 AC090617.8-201ENST00000623339 167 ntBASIC0.45□□□□□ -2.34
COL4A3Q01955 RNU6-1036P-201ENST00000383959 104 ntBASIC0.44□□□□□ -2.34
COL4A3Q01955 SCARNA21.1-201ENST00000515996 128 ntBASIC0.44□□□□□ -2.34
COL4A3Q01955 RNU7-129P-201ENST00000516128 62 ntBASIC0.44□□□□□ -2.34
COL4A3Q01955 SCARNA11.2-201ENST00000517183 154 ntBASIC0.44□□□□□ -2.34
COL4A3Q01955 MIR4493-201ENST00000584016 73 ntBASIC0.44□□□□□ -2.34
COL4A3Q01955 Y_RNA.246-201ENST00000364495 108 ntBASIC0.43□□□□□ -2.34
COL4A3Q01955 MIR604-201ENST00000384880 94 ntBASIC0.43□□□□□ -2.34
COL4A3Q01955 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.43□□□□□ -2.34
COL4A3Q01955 SNORA68.3-201ENST00000515906 83 ntBASIC0.43□□□□□ -2.34
COL4A3Q01955 MIR466-201ENST00000580653 84 ntBASIC0.43□□□□□ -2.34
COL4A3Q01955 MIR5190-201ENST00000581537 80 ntBASIC0.43□□□□□ -2.34
COL4A3Q01955 RNU6-669P-201ENST00000365575 107 ntBASIC0.42□□□□□ -2.34
COL4A3Q01955 MIR519A2-201ENST00000384990 87 ntBASIC0.42□□□□□ -2.34
COL4A3Q01955 AL021921.1-201ENST00000442774 93 ntBASIC0.42□□□□□ -2.34
COL4A3Q01955 AP001180.6-201ENST00000584918 159 ntBASIC0.42□□□□□ -2.34
COL4A3Q01955 MIR6773-201ENST00000612812 74 ntBASIC0.42□□□□□ -2.34
COL4A3Q01955 U4.4-201ENST00000620626 117 ntBASIC0.42□□□□□ -2.34
COL4A3Q01955 RNU6-815P-201ENST00000384080 113 ntBASIC0.4□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 190.8 ms