Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNU6-215P-201ENST00000365169 102 ntBASIC-0.55□□□□□ -2.5
CTCFP49711 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.55□□□□□ -2.5
CTCFP49711 AC021146.9-201ENST00000512503 156 ntBASIC-0.55□□□□□ -2.5
CTCFP49711 U6.81-201ENST00000612550 106 ntBASIC-0.55□□□□□ -2.5
CTCFP49711 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.56□□□□□ -2.5
CTCFP49711 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.56□□□□□ -2.5
CTCFP49711 AC006254.2-201ENST00000603259 279 ntBASIC-0.56□□□□□ -2.5
CTCFP49711 SNORA2.1-201ENST00000363089 137 ntBASIC-0.57□□□□□ -2.5
CTCFP49711 SNORD115-27-201ENST00000364430 82 ntBASIC-0.57□□□□□ -2.5
CTCFP49711 RNU6-260P-201ENST00000384092 107 ntBASIC-0.57□□□□□ -2.5
CTCFP49711 RNU7-153P-201ENST00000516455 62 ntBASIC-0.57□□□□□ -2.5
CTCFP49711 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.57□□□□□ -2.5
CTCFP49711 AP000533.3-201ENST00000447704 118 ntBASIC-0.58□□□□□ -2.5
CTCFP49711 AC022137.1-201ENST00000483735 151 ntBASIC-0.58□□□□□ -2.5
CTCFP49711 MIR3657-201ENST00000584818 117 ntBASIC-0.58□□□□□ -2.5
CTCFP49711 SNORA63.4-201ENST00000362763 126 ntBASIC-0.59□□□□□ -2.5
CTCFP49711 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.59□□□□□ -2.5
CTCFP49711 SNORA33.1-201ENST00000364957 130 ntBASIC-0.59□□□□□ -2.5
CTCFP49711 SNORA62.4-201ENST00000365504 151 ntBASIC-0.59□□□□□ -2.5
CTCFP49711 SNORD20-201ENST00000384550 80 ntBASIC-0.59□□□□□ -2.5
CTCFP49711 MIR517B-201ENST00000385102 67 ntBASIC-0.59□□□□□ -2.5
CTCFP49711 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.59□□□□□ -2.5
CTCFP49711 SNORA40.13-201ENST00000516379 120 ntBASIC-0.59□□□□□ -2.5
CTCFP49711 MIR378F-201ENST00000578143 78 ntBASIC-0.59□□□□□ -2.5
CTCFP49711 snoR1.1-201ENST00000628177 80 ntBASIC-0.59□□□□□ -2.5
CTCFP49711 U6.96-201ENST00000636425 70 ntBASIC-0.59□□□□□ -2.5
CTCFP49711 RNU6-431P-201ENST00000383874 107 ntBASIC-0.6□□□□□ -2.51
CTCFP49711 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.6□□□□□ -2.51
CTCFP49711 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.6□□□□□ -2.51
CTCFP49711 MIR147A-201ENST00000385079 72 ntBASIC-0.6□□□□□ -2.51
CTCFP49711 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.6□□□□□ -2.51
CTCFP49711 RNU6-919P-201ENST00000516731 104 ntBASIC-0.6□□□□□ -2.51
CTCFP49711 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.6□□□□□ -2.51
CTCFP49711 AL353803.5-201ENST00000599815 141 ntBASIC-0.6□□□□□ -2.51
CTCFP49711 AL445584.3-201ENST00000617173 78 ntBASIC-0.6□□□□□ -2.51
CTCFP49711 MIR6888-201ENST00000621977 67 ntBASIC-0.6□□□□□ -2.51
CTCFP49711 MIR4773-1-201ENST00000637203 78 ntBASIC-0.6□□□□□ -2.51
CTCFP49711 RNU6-208P-201ENST00000362431 107 ntBASIC-0.61□□□□□ -2.51
CTCFP49711 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.61□□□□□ -2.51
CTCFP49711 MIR6509-201ENST00000614603 85 ntBASIC-0.61□□□□□ -2.51
CTCFP49711 Y_RNA.348-201ENST00000365403 103 ntBASIC-0.62□□□□□ -2.51
CTCFP49711 MIR203A-201ENST00000384836 110 ntBASIC-0.62□□□□□ -2.51
CTCFP49711 MIR519C-201ENST00000385053 87 ntBASIC-0.62□□□□□ -2.51
CTCFP49711 AL500527.2-201ENST00000454105 95 ntBASIC-0.62□□□□□ -2.51
CTCFP49711 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.62□□□□□ -2.51
CTCFP49711 RNA5SP147-201ENST00000516493 109 ntBASIC-0.62□□□□□ -2.51
CTCFP49711 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.62□□□□□ -2.51
CTCFP49711 MALAT1.1-201ENST00000618249 95 ntBASIC-0.62□□□□□ -2.51
CTCFP49711 MIR6739-201ENST00000622461 75 ntBASIC-0.62□□□□□ -2.51
CTCFP49711 RNU6-147P-201ENST00000383983 107 ntBASIC-0.63□□□□□ -2.51
CTCFP49711 MIR521-2-201ENST00000384818 87 ntBASIC-0.63□□□□□ -2.51
CTCFP49711 RNU6-274P-201ENST00000459566 107 ntBASIC-0.63□□□□□ -2.51
CTCFP49711 RNA5SP470-201ENST00000516463 106 ntBASIC-0.63□□□□□ -2.51
CTCFP49711 MIR4668-201ENST00000582284 70 ntBASIC-0.63□□□□□ -2.51
CTCFP49711 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.63□□□□□ -2.51
CTCFP49711 SNORD114-25-201ENST00000363742 72 ntBASIC-0.64□□□□□ -2.51
CTCFP49711 RNU6-32P-201ENST00000383948 107 ntBASIC-0.64□□□□□ -2.51
CTCFP49711 RNU6-13P-201ENST00000384248 107 ntBASIC-0.64□□□□□ -2.51
CTCFP49711 RNU6-12P-201ENST00000384604 107 ntBASIC-0.64□□□□□ -2.51
CTCFP49711 RNU6-41P-201ENST00000384741 107 ntBASIC-0.64□□□□□ -2.51
CTCFP49711 MIR124-2-201ENST00000385081 109 ntBASIC-0.64□□□□□ -2.51
CTCFP49711 SNORD64-201ENST00000386683 67 ntBASIC-0.64□□□□□ -2.51
CTCFP49711 MIR196A1-201ENST00000388006 70 ntBASIC-0.64□□□□□ -2.51
CTCFP49711 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-0.64□□□□□ -2.51
CTCFP49711 MIR1255B2-201ENST00000408618 67 ntBASIC-0.64□□□□□ -2.51
CTCFP49711 RNU6-752P-201ENST00000516376 102 ntBASIC-0.64□□□□□ -2.51
CTCFP49711 CYP3A54P-201ENST00000566950 75 ntBASIC-0.64□□□□□ -2.51
CTCFP49711 RNU6-633P-201ENST00000362612 103 ntBASIC-0.65□□□□□ -2.51
CTCFP49711 RNU6-497P-201ENST00000365316 104 ntBASIC-0.65□□□□□ -2.51
CTCFP49711 AL691482.2-201ENST00000457453 84 ntBASIC-0.65□□□□□ -2.51
CTCFP49711 SNORD18.2-201ENST00000459604 70 ntBASIC-0.65□□□□□ -2.51
CTCFP49711 RNU7-154P-201ENST00000516194 62 ntBASIC-0.65□□□□□ -2.51
CTCFP49711 MIR382-201ENST00000637119 76 ntBASIC-0.65□□□□□ -2.51
CTCFP49711 RNU6-340P-201ENST00000364005 107 ntBASIC-0.66□□□□□ -2.52
CTCFP49711 Y_RNA.291-201ENST00000364886 113 ntBASIC-0.66□□□□□ -2.52
CTCFP49711 RNU6-10P-201ENST00000384036 107 ntBASIC-0.66□□□□□ -2.52
CTCFP49711 RNY1P7-201ENST00000384743 110 ntBASIC-0.66□□□□□ -2.52
CTCFP49711 AL035461.1-201ENST00000421490 332 ntBASIC-0.66□□□□□ -2.52
CTCFP49711 MIR548AI-201ENST00000579940 88 ntBASIC-0.66□□□□□ -2.52
CTCFP49711 RNU6-640P-201ENST00000363693 105 ntBASIC-0.67□□□□□ -2.52
CTCFP49711 SNORD114-17-201ENST00000364699 75 ntBASIC-0.67□□□□□ -2.52
CTCFP49711 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.67□□□□□ -2.52
CTCFP49711 Y_RNA.620-201ENST00000411009 88 ntBASIC-0.67□□□□□ -2.52
CTCFP49711 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.67□□□□□ -2.52
CTCFP49711 U2.22-201ENST00000636441 106 ntBASIC-0.67□□□□□ -2.52
CTCFP49711 RNU6-624P-201ENST00000363411 107 ntBASIC-0.68□□□□□ -2.52
CTCFP49711 MIR519A2-201ENST00000384990 87 ntBASIC-0.68□□□□□ -2.52
CTCFP49711 AL450471.1-201ENST00000447509 127 ntBASIC-0.68□□□□□ -2.52
CTCFP49711 SCARNA18B-201ENST00000458806 135 ntBASIC-0.68□□□□□ -2.52
CTCFP49711 FAS-AS1.1-201ENST00000615327 126 ntBASIC-0.68□□□□□ -2.52
CTCFP49711 MIR488-201ENST00000365739 83 ntBASIC-0.69□□□□□ -2.52
CTCFP49711 SNORD77.2-201ENST00000391045 68 ntBASIC-0.69□□□□□ -2.52
CTCFP49711 RNU6-656P-201ENST00000516785 107 ntBASIC-0.69□□□□□ -2.52
CTCFP49711 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.7□□□□□ -2.52
CTCFP49711 RNU6-219P-201ENST00000364728 107 ntBASIC-0.7□□□□□ -2.52
CTCFP49711 SNORD116-22-201ENST00000384430 92 ntBASIC-0.7□□□□□ -2.52
CTCFP49711 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.7□□□□□ -2.52
CTCFP49711 MIR4499-201ENST00000584834 69 ntBASIC-0.7□□□□□ -2.52
CTCFP49711 MIR6738-201ENST00000619620 64 ntBASIC-0.7□□□□□ -2.52
CTCFP49711 MIR365A-201ENST00000362260 87 ntBASIC-0.71□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 197.5 ms