Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU7-55P-201ENST00000459426 62 ntBASIC-0.16□□□□□ -2.44
HOXA1P49639 RNA5SP285-201ENST00000516619 119 ntBASIC-0.16□□□□□ -2.44
HOXA1P49639 RNU6-303P-201ENST00000517091 106 ntBASIC-0.16□□□□□ -2.44
HOXA1P49639 MIR4280-201ENST00000582178 76 ntBASIC-0.16□□□□□ -2.44
HOXA1P49639 MIR664A-201ENST00000626086 82 ntBASIC-0.16□□□□□ -2.44
HOXA1P49639 Y_RNA.313-201ENST00000365095 103 ntBASIC-0.17□□□□□ -2.44
HOXA1P49639 RNA5SP300-201ENST00000391197 107 ntBASIC-0.17□□□□□ -2.44
HOXA1P49639 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.17□□□□□ -2.44
HOXA1P49639 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.17□□□□□ -2.44
HOXA1P49639 MIR4432-201ENST00000581823 84 ntBASIC-0.17□□□□□ -2.44
HOXA1P49639 Y_RNA.788-201ENST00000622394 112 ntBASIC-0.17□□□□□ -2.44
HOXA1P49639 RNA5SP173-201ENST00000364857 136 ntBASIC-0.18□□□□□ -2.44
HOXA1P49639 RNU6-46P-201ENST00000383860 107 ntBASIC-0.18□□□□□ -2.44
HOXA1P49639 SNORA8.1-201ENST00000384250 140 ntBASIC-0.18□□□□□ -2.44
HOXA1P49639 SNORA26.2-201ENST00000390922 122 ntBASIC-0.18□□□□□ -2.44
HOXA1P49639 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.18□□□□□ -2.44
HOXA1P49639 MIR4712-201ENST00000583750 82 ntBASIC-0.18□□□□□ -2.44
HOXA1P49639 U6.96-201ENST00000636425 70 ntBASIC-0.18□□□□□ -2.44
HOXA1P49639 SNORA18.1-201ENST00000363418 128 ntBASIC-0.19□□□□□ -2.44
HOXA1P49639 RNU6-900P-201ENST00000384498 102 ntBASIC-0.19□□□□□ -2.44
HOXA1P49639 RNU6-1152P-201ENST00000384576 107 ntBASIC-0.19□□□□□ -2.44
HOXA1P49639 MIR196A2-201ENST00000385189 110 ntBASIC-0.19□□□□□ -2.44
HOXA1P49639 RNU6-721P-201ENST00000410155 105 ntBASIC-0.19□□□□□ -2.44
HOXA1P49639 AC096531.1-201ENST00000419107 107 ntBASIC-0.19□□□□□ -2.44
HOXA1P49639 AC074348.1-201ENST00000426503 132 ntBASIC-0.19□□□□□ -2.44
HOXA1P49639 RNU6-752P-201ENST00000516376 102 ntBASIC-0.19□□□□□ -2.44
HOXA1P49639 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.19□□□□□ -2.44
HOXA1P49639 MIR3666-201ENST00000607845 111 ntBASIC-0.19□□□□□ -2.44
HOXA1P49639 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.2□□□□□ -2.44
HOXA1P49639 RNU6-982P-201ENST00000516216 102 ntBASIC-0.2□□□□□ -2.44
HOXA1P49639 RNU6-881P-201ENST00000516813 102 ntBASIC-0.2□□□□□ -2.44
HOXA1P49639 MIR4666B-201ENST00000578142 81 ntBASIC-0.2□□□□□ -2.44
HOXA1P49639 MIR6851-201ENST00000617060 67 ntBASIC-0.2□□□□□ -2.44
HOXA1P49639 MIR6888-201ENST00000621977 67 ntBASIC-0.2□□□□□ -2.44
HOXA1P49639 AL391099.1-201ENST00000624635 187 ntBASIC-0.2□□□□□ -2.44
HOXA1P49639 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.21□□□□□ -2.44
HOXA1P49639 RNU6-973P-201ENST00000364690 107 ntBASIC-0.21□□□□□ -2.44
HOXA1P49639 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.21□□□□□ -2.44
HOXA1P49639 MIR1255B2-201ENST00000408618 67 ntBASIC-0.21□□□□□ -2.44
HOXA1P49639 SCARNA18B-201ENST00000458806 135 ntBASIC-0.21□□□□□ -2.44
HOXA1P49639 SNORD2-201ENST00000459163 69 ntBASIC-0.21□□□□□ -2.44
HOXA1P49639 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.21□□□□□ -2.44
HOXA1P49639 RNU6-656P-201ENST00000516785 107 ntBASIC-0.21□□□□□ -2.44
HOXA1P49639 RNA5SP66-201ENST00000517178 101 ntBASIC-0.21□□□□□ -2.44
HOXA1P49639 MIR1245B-201ENST00000636115 69 ntBASIC-0.21□□□□□ -2.44
HOXA1P49639 RNU6-315P-201ENST00000362666 107 ntBASIC-0.22□□□□□ -2.44
HOXA1P49639 SNORD114-31-201ENST00000363219 75 ntBASIC-0.22□□□□□ -2.44
HOXA1P49639 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.22□□□□□ -2.44
HOXA1P49639 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.22□□□□□ -2.44
HOXA1P49639 MIR214-201ENST00000385214 110 ntBASIC-0.22□□□□□ -2.44
HOXA1P49639 RNU6-604P-201ENST00000390917 100 ntBASIC-0.22□□□□□ -2.44
HOXA1P49639 SNORD126-201ENST00000459475 77 ntBASIC-0.22□□□□□ -2.44
HOXA1P49639 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-0.22□□□□□ -2.44
HOXA1P49639 MIR3675-201ENST00000583661 73 ntBASIC-0.22□□□□□ -2.44
HOXA1P49639 AL353803.5-201ENST00000599815 141 ntBASIC-0.22□□□□□ -2.44
HOXA1P49639 Y_RNA.374-201ENST00000365606 101 ntBASIC-0.23□□□□□ -2.45
HOXA1P49639 RNU6-284P-201ENST00000411105 106 ntBASIC-0.23□□□□□ -2.45
HOXA1P49639 SNORD22.1-201ENST00000516331 125 ntBASIC-0.23□□□□□ -2.45
HOXA1P49639 RNU6-320P-201ENST00000516511 106 ntBASIC-0.23□□□□□ -2.45
HOXA1P49639 MIR6759-201ENST00000638110 65 ntBASIC-0.23□□□□□ -2.45
HOXA1P49639 RNA5SP275-201ENST00000363936 118 ntBASIC-0.24□□□□□ -2.45
HOXA1P49639 RNU6-901P-201ENST00000384593 106 ntBASIC-0.24□□□□□ -2.45
HOXA1P49639 MIR519A2-201ENST00000384990 87 ntBASIC-0.24□□□□□ -2.45
HOXA1P49639 SNORA3B-201ENST00000391305 131 ntBASIC-0.24□□□□□ -2.45
HOXA1P49639 Y_RNA.681-201ENST00000516445 113 ntBASIC-0.24□□□□□ -2.45
HOXA1P49639 MIR8064-201ENST00000612863 90 ntBASIC-0.24□□□□□ -2.45
HOXA1P49639 MIR6854-201ENST00000614935 69 ntBASIC-0.24□□□□□ -2.45
HOXA1P49639 AC093726.3-201ENST00000637588 150 ntBASIC-0.24□□□□□ -2.45
HOXA1P49639 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.25□□□□□ -2.45
HOXA1P49639 RNU6-645P-201ENST00000364649 106 ntBASIC-0.25□□□□□ -2.45
HOXA1P49639 MIR124-2-201ENST00000385081 109 ntBASIC-0.25□□□□□ -2.45
HOXA1P49639 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.25□□□□□ -2.45
HOXA1P49639 IGLVI-20-201ENST00000519296 130 ntBASIC-0.25□□□□□ -2.45
HOXA1P49639 CYP3A54P-201ENST00000566950 75 ntBASIC-0.25□□□□□ -2.45
HOXA1P49639 AL445584.3-201ENST00000617173 78 ntBASIC-0.25□□□□□ -2.45
HOXA1P49639 U2.7-201ENST00000619197 100 ntBASIC-0.25□□□□□ -2.45
HOXA1P49639 MIR6739-201ENST00000622461 75 ntBASIC-0.25□□□□□ -2.45
HOXA1P49639 SNORD45.1-201ENST00000363181 77 ntBASIC-0.26□□□□□ -2.45
HOXA1P49639 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.26□□□□□ -2.45
HOXA1P49639 RNU6-1124P-201ENST00000384169 107 ntBASIC-0.26□□□□□ -2.45
HOXA1P49639 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.26□□□□□ -2.45
HOXA1P49639 SNORD45A-201ENST00000384512 84 ntBASIC-0.26□□□□□ -2.45
HOXA1P49639 RNU6-246P-201ENST00000384702 107 ntBASIC-0.26□□□□□ -2.45
HOXA1P49639 MIR521-2-201ENST00000384818 87 ntBASIC-0.26□□□□□ -2.45
HOXA1P49639 MIR517B-201ENST00000385102 67 ntBASIC-0.26□□□□□ -2.45
HOXA1P49639 RNU6-380P-201ENST00000410207 107 ntBASIC-0.26□□□□□ -2.45
HOXA1P49639 AP000533.3-201ENST00000447704 118 ntBASIC-0.26□□□□□ -2.45
HOXA1P49639 RNU6-518P-201ENST00000516056 96 ntBASIC-0.26□□□□□ -2.45
HOXA1P49639 RNU6-807P-201ENST00000516805 107 ntBASIC-0.26□□□□□ -2.45
HOXA1P49639 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.27□□□□□ -2.45
HOXA1P49639 SNORD115-22-201ENST00000364456 82 ntBASIC-0.27□□□□□ -2.45
HOXA1P49639 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.27□□□□□ -2.45
HOXA1P49639 SNORD14C-201ENST00000365382 88 ntBASIC-0.27□□□□□ -2.45
HOXA1P49639 RPS29P8-201ENST00000445109 171 ntBASIC-0.27□□□□□ -2.45
HOXA1P49639 AL500527.2-201ENST00000454105 95 ntBASIC-0.27□□□□□ -2.45
HOXA1P49639 AP002795.1-201ENST00000534879 84 ntBASIC-0.27□□□□□ -2.45
HOXA1P49639 MIR3179-1-201ENST00000578940 84 ntBASIC-0.27□□□□□ -2.45
HOXA1P49639 MIR3179-2-201ENST00000579107 84 ntBASIC-0.27□□□□□ -2.45
HOXA1P49639 MIR3179-3-201ENST00000579566 84 ntBASIC-0.27□□□□□ -2.45
HOXA1P49639 MIR3179-4-201ENST00000617599 84 ntBASIC-0.27□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 173.3 ms