Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 MIR5704-201ENST00000584029 77 ntBASIC-0.5□□□□□ -2.49
TNFRSF4P43489 RNU6-681P-201ENST00000364012 104 ntBASIC-0.51□□□□□ -2.49
TNFRSF4P43489 RNY1P7-201ENST00000384743 110 ntBASIC-0.51□□□□□ -2.49
TNFRSF4P43489 RNU6-337P-201ENST00000391243 106 ntBASIC-0.51□□□□□ -2.49
TNFRSF4P43489 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.51□□□□□ -2.49
TNFRSF4P43489 RNU6-752P-201ENST00000516376 102 ntBASIC-0.51□□□□□ -2.49
TNFRSF4P43489 SNORD38.3-201ENST00000516599 73 ntBASIC-0.51□□□□□ -2.49
TNFRSF4P43489 RNU6-267P-201ENST00000516714 103 ntBASIC-0.51□□□□□ -2.49
TNFRSF4P43489 MIR4280-201ENST00000582178 76 ntBASIC-0.51□□□□□ -2.49
TNFRSF4P43489 MIR6851-201ENST00000617060 67 ntBASIC-0.51□□□□□ -2.49
TNFRSF4P43489 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.52□□□□□ -2.49
TNFRSF4P43489 RNU6-219P-201ENST00000364728 107 ntBASIC-0.52□□□□□ -2.49
TNFRSF4P43489 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.52□□□□□ -2.49
TNFRSF4P43489 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.52□□□□□ -2.49
TNFRSF4P43489 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.52□□□□□ -2.49
TNFRSF4P43489 RNU6-168P-201ENST00000516189 101 ntBASIC-0.52□□□□□ -2.49
TNFRSF4P43489 RNA5SP169-201ENST00000517268 117 ntBASIC-0.52□□□□□ -2.49
TNFRSF4P43489 RNU6-340P-201ENST00000364005 107 ntBASIC-0.53□□□□□ -2.49
TNFRSF4P43489 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.53□□□□□ -2.49
TNFRSF4P43489 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.53□□□□□ -2.49
TNFRSF4P43489 SNORA33.1-201ENST00000364957 130 ntBASIC-0.53□□□□□ -2.49
TNFRSF4P43489 RNU6-1134P-201ENST00000365156 101 ntBASIC-0.53□□□□□ -2.49
TNFRSF4P43489 Y_RNA.611-201ENST00000410682 108 ntBASIC-0.53□□□□□ -2.49
TNFRSF4P43489 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.53□□□□□ -2.49
TNFRSF4P43489 MIR548BB-201ENST00000626714 66 ntBASIC-0.53□□□□□ -2.49
TNFRSF4P43489 RNU6-844P-201ENST00000517175 102 ntBASIC-0.54□□□□□ -2.5
TNFRSF4P43489 YWHAEP3-201ENST00000582767 121 ntBASIC-0.54□□□□□ -2.5
TNFRSF4P43489 MIR6854-201ENST00000614935 69 ntBASIC-0.54□□□□□ -2.5
TNFRSF4P43489 SNORA3B-201ENST00000391305 131 ntBASIC-0.55□□□□□ -2.5
TNFRSF4P43489 RNA5SP89-201ENST00000410300 108 ntBASIC-0.55□□□□□ -2.5
TNFRSF4P43489 AC021146.6-201ENST00000514659 117 ntBASIC-0.55□□□□□ -2.5
TNFRSF4P43489 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.55□□□□□ -2.5
TNFRSF4P43489 RNU6-1131P-201ENST00000364955 107 ntBASIC-0.56□□□□□ -2.5
TNFRSF4P43489 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.56□□□□□ -2.5
TNFRSF4P43489 AC140658.3-201ENST00000567603 271 ntBASIC-0.56□□□□□ -2.5
TNFRSF4P43489 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.56□□□□□ -2.5
TNFRSF4P43489 AC090617.8-201ENST00000623339 167 ntBASIC-0.56□□□□□ -2.5
TNFRSF4P43489 SNORD115-23-201ENST00000364461 82 ntBASIC-0.57□□□□□ -2.5
TNFRSF4P43489 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.57□□□□□ -2.5
TNFRSF4P43489 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.57□□□□□ -2.5
TNFRSF4P43489 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.57□□□□□ -2.5
TNFRSF4P43489 MIR518B-201ENST00000385127 83 ntBASIC-0.57□□□□□ -2.5
TNFRSF4P43489 SNX3P1X-201ENST00000414887 175 ntBASIC-0.57□□□□□ -2.5
TNFRSF4P43489 RNU6-624P-201ENST00000363411 107 ntBASIC-0.58□□□□□ -2.5
TNFRSF4P43489 MIR587-201ENST00000384845 96 ntBASIC-0.58□□□□□ -2.5
TNFRSF4P43489 SNORA13-201ENST00000458790 133 ntBASIC-0.58□□□□□ -2.5
TNFRSF4P43489 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.58□□□□□ -2.5
TNFRSF4P43489 MIR8068-201ENST00000618032 68 ntBASIC-0.58□□□□□ -2.5
TNFRSF4P43489 Y_RNA.17-201ENST00000362433 111 ntBASIC-0.59□□□□□ -2.5
TNFRSF4P43489 MIR1255B2-201ENST00000408618 67 ntBASIC-0.59□□□□□ -2.5
TNFRSF4P43489 SNORD114-14-201ENST00000362723 75 ntBASIC-0.6□□□□□ -2.51
TNFRSF4P43489 RNU6-497P-201ENST00000365316 104 ntBASIC-0.6□□□□□ -2.51
TNFRSF4P43489 RNU6-675P-201ENST00000384236 104 ntBASIC-0.6□□□□□ -2.51
TNFRSF4P43489 MIR521-2-201ENST00000384818 87 ntBASIC-0.6□□□□□ -2.51
TNFRSF4P43489 RNY4P30-201ENST00000410216 95 ntBASIC-0.6□□□□□ -2.51
TNFRSF4P43489 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.6□□□□□ -2.51
TNFRSF4P43489 SNORD22.1-201ENST00000516331 125 ntBASIC-0.6□□□□□ -2.51
TNFRSF4P43489 MIR3179-1-201ENST00000578940 84 ntBASIC-0.6□□□□□ -2.51
TNFRSF4P43489 MIR3179-2-201ENST00000579107 84 ntBASIC-0.6□□□□□ -2.51
TNFRSF4P43489 MIR3179-3-201ENST00000579566 84 ntBASIC-0.6□□□□□ -2.51
TNFRSF4P43489 MIR3179-4-201ENST00000617599 84 ntBASIC-0.6□□□□□ -2.51
TNFRSF4P43489 RNU6-153P-201ENST00000364422 104 ntBASIC-0.61□□□□□ -2.51
TNFRSF4P43489 SNORA62.4-201ENST00000365504 151 ntBASIC-0.61□□□□□ -2.51
TNFRSF4P43489 RNU6-49P-201ENST00000384256 107 ntBASIC-0.61□□□□□ -2.51
TNFRSF4P43489 CYP3A54P-201ENST00000566950 75 ntBASIC-0.61□□□□□ -2.51
TNFRSF4P43489 AL353803.5-201ENST00000599815 141 ntBASIC-0.61□□□□□ -2.51
TNFRSF4P43489 IGLL4P-201ENST00000614590 133 ntBASIC-0.61□□□□□ -2.51
TNFRSF4P43489 AC006160.2-201ENST00000637708 154 ntBASIC-0.61□□□□□ -2.51
TNFRSF4P43489 RNY1P1-201ENST00000364372 112 ntBASIC-0.62□□□□□ -2.51
TNFRSF4P43489 MIR1468-201ENST00000410600 86 ntBASIC-0.62□□□□□ -2.51
TNFRSF4P43489 RNA5SP470-201ENST00000516463 106 ntBASIC-0.62□□□□□ -2.51
TNFRSF4P43489 RNU6-557P-201ENST00000516842 110 ntBASIC-0.62□□□□□ -2.51
TNFRSF4P43489 snoMBII-202.2-201ENST00000517263 86 ntBASIC-0.62□□□□□ -2.51
TNFRSF4P43489 MIR6739-201ENST00000622461 75 ntBASIC-0.62□□□□□ -2.51
TNFRSF4P43489 RNU6-686P-201ENST00000364839 107 ntBASIC-0.63□□□□□ -2.51
TNFRSF4P43489 RNU6-129P-201ENST00000391022 107 ntBASIC-0.63□□□□□ -2.51
TNFRSF4P43489 Y_RNA.593-201ENST00000410292 98 ntBASIC-0.63□□□□□ -2.51
TNFRSF4P43489 RNU6-303P-201ENST00000517091 106 ntBASIC-0.63□□□□□ -2.51
TNFRSF4P43489 MIR6738-201ENST00000619620 64 ntBASIC-0.63□□□□□ -2.51
TNFRSF4P43489 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-0.63□□□□□ -2.51
TNFRSF4P43489 RNU6-10P-201ENST00000384036 107 ntBASIC-0.64□□□□□ -2.51
TNFRSF4P43489 SNORA8.1-201ENST00000384250 140 ntBASIC-0.64□□□□□ -2.51
TNFRSF4P43489 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.64□□□□□ -2.51
TNFRSF4P43489 MIR124-2-201ENST00000385081 109 ntBASIC-0.64□□□□□ -2.51
TNFRSF4P43489 MIR4436A-201ENST00000585278 85 ntBASIC-0.64□□□□□ -2.51
TNFRSF4P43489 Y_RNA.73-201ENST00000362910 113 ntBASIC-0.65□□□□□ -2.51
TNFRSF4P43489 SNORD74.6-201ENST00000364796 70 ntBASIC-0.65□□□□□ -2.51
TNFRSF4P43489 AP000533.3-201ENST00000447704 118 ntBASIC-0.65□□□□□ -2.51
TNFRSF4P43489 SNORD18.2-201ENST00000459604 70 ntBASIC-0.65□□□□□ -2.51
TNFRSF4P43489 AC022137.1-201ENST00000483735 151 ntBASIC-0.65□□□□□ -2.51
TNFRSF4P43489 MIR198-201ENST00000637333 62 ntBASIC-0.65□□□□□ -2.51
TNFRSF4P43489 RNU6-478P-201ENST00000363904 110 ntBASIC-0.66□□□□□ -2.52
TNFRSF4P43489 MIR601-201ENST00000385256 79 ntBASIC-0.66□□□□□ -2.52
TNFRSF4P43489 RNU6-380P-201ENST00000410207 107 ntBASIC-0.66□□□□□ -2.52
TNFRSF4P43489 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.66□□□□□ -2.52
TNFRSF4P43489 SCARNA17-201ENST00000516183 144 ntBASIC-0.66□□□□□ -2.52
TNFRSF4P43489 MIR3675-201ENST00000583661 73 ntBASIC-0.66□□□□□ -2.52
TNFRSF4P43489 MIR4324-201ENST00000584846 72 ntBASIC-0.66□□□□□ -2.52
TNFRSF4P43489 MIR4320-201ENST00000636981 65 ntBASIC-0.66□□□□□ -2.52
TNFRSF4P43489 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.67□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms