Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 Y_RNA.178-201ENST00000363832 102 ntBASIC-1.99□□□□□ -2.73
HMGB1P09429 MIR1255B2-201ENST00000408618 67 ntBASIC-1.99□□□□□ -2.73
HMGB1P09429 RNU6-1216P-201ENST00000362590 107 ntBASIC-2□□□□□ -2.73
HMGB1P09429 RNU6-1233P-201ENST00000362922 102 ntBASIC-2□□□□□ -2.73
HMGB1P09429 Y_RNA.261-201ENST00000364631 102 ntBASIC-2□□□□□ -2.73
HMGB1P09429 SNORA15B-2-201ENST00000384058 135 ntBASIC-2□□□□□ -2.73
HMGB1P09429 Y_RNA.457-201ENST00000384237 111 ntBASIC-2□□□□□ -2.73
HMGB1P09429 SNORA15B-1-201ENST00000384334 135 ntBASIC-2□□□□□ -2.73
HMGB1P09429 Y_RNA.558-201ENST00000384685 113 ntBASIC-2□□□□□ -2.73
HMGB1P09429 Y_RNA.698-201ENST00000516798 118 ntBASIC-2□□□□□ -2.73
HMGB1P09429 Y_RNA.107-201ENST00000363190 121 ntBASIC-2.01□□□□□ -2.73
HMGB1P09429 RNU2-51P-201ENST00000410708 197 ntBASIC-2.01□□□□□ -2.73
HMGB1P09429 MIR198-201ENST00000637333 62 ntBASIC-2.01□□□□□ -2.73
HMGB1P09429 MIR1236-201ENST00000408340 102 ntBASIC-2.02□□□□□ -2.73
HMGB1P09429 RNU6-162P-201ENST00000516228 103 ntBASIC-2.02□□□□□ -2.73
HMGB1P09429 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-2.02□□□□□ -2.73
HMGB1P09429 SNORA33.1-201ENST00000364957 130 ntBASIC-2.03□□□□□ -2.73
HMGB1P09429 RNU6-1113P-201ENST00000384348 107 ntBASIC-2.03□□□□□ -2.73
HMGB1P09429 MIR889-201ENST00000401280 79 ntBASIC-2.03□□□□□ -2.73
HMGB1P09429 MIR5591-201ENST00000578248 65 ntBASIC-2.03□□□□□ -2.73
HMGB1P09429 SNORD115-22-201ENST00000364456 82 ntBASIC-2.04□□□□□ -2.74
HMGB1P09429 AL353691.2-201ENST00000443795 59 ntBASIC-2.04□□□□□ -2.74
HMGB1P09429 MIR3668-201ENST00000582138 75 ntBASIC-2.04□□□□□ -2.74
HMGB1P09429 RNA5SP26-201ENST00000362406 119 ntBASIC-2.05□□□□□ -2.74
HMGB1P09429 AC008267.6-201ENST00000441664 139 ntBASIC-2.05□□□□□ -2.74
HMGB1P09429 RNU6-537P-201ENST00000517277 103 ntBASIC-2.05□□□□□ -2.74
HMGB1P09429 CYP3A54P-201ENST00000566950 75 ntBASIC-2.05□□□□□ -2.74
HMGB1P09429 MIR4770-201ENST00000579149 58 ntBASIC-2.05□□□□□ -2.74
HMGB1P09429 MIR3657-201ENST00000584818 117 ntBASIC-2.05□□□□□ -2.74
HMGB1P09429 Y_RNA.181-201ENST00000363872 101 ntBASIC-2.06□□□□□ -2.74
HMGB1P09429 MIR507-201ENST00000385234 94 ntBASIC-2.06□□□□□ -2.74
HMGB1P09429 Y_RNA.613-201ENST00000410726 97 ntBASIC-2.06□□□□□ -2.74
HMGB1P09429 DLEU2_3.2-201ENST00000612883 73 ntBASIC-2.06□□□□□ -2.74
HMGB1P09429 SNORA2.1-201ENST00000363089 137 ntBASIC-2.07□□□□□ -2.74
HMGB1P09429 RNU6-959P-201ENST00000384671 107 ntBASIC-2.07□□□□□ -2.74
HMGB1P09429 RNU6-109P-201ENST00000516364 107 ntBASIC-2.07□□□□□ -2.74
HMGB1P09429 RNU6-184P-201ENST00000516514 107 ntBASIC-2.07□□□□□ -2.74
HMGB1P09429 MIR4520-1-201ENST00000582609 70 ntBASIC-2.07□□□□□ -2.74
HMGB1P09429 AC091912.2-201ENST00000624798 167 ntBASIC-2.07□□□□□ -2.74
HMGB1P09429 Y_RNA.250-201ENST00000364542 110 ntBASIC-2.08□□□□□ -2.74
HMGB1P09429 RNU6-164P-201ENST00000364604 103 ntBASIC-2.08□□□□□ -2.74
HMGB1P09429 SNX3P1X-201ENST00000414887 175 ntBASIC-2.08□□□□□ -2.74
HMGB1P09429 MIR3671-201ENST00000580455 88 ntBASIC-2.08□□□□□ -2.74
HMGB1P09429 MIR1285-2-201ENST00000408311 88 ntBASIC-2.09□□□□□ -2.74
HMGB1P09429 RNU6-1064P-201ENST00000410626 104 ntBASIC-2.09□□□□□ -2.74
HMGB1P09429 U7.3-201ENST00000616123 62 ntBASIC-2.09□□□□□ -2.74
HMGB1P09429 MIR601-201ENST00000385256 79 ntBASIC-2.1□□□□□ -2.75
HMGB1P09429 RNU6-554P-201ENST00000410466 106 ntBASIC-2.1□□□□□ -2.75
HMGB1P09429 RNU7-154P-201ENST00000516194 62 ntBASIC-2.11□□□□□ -2.75
HMGB1P09429 U6.81-201ENST00000612550 106 ntBASIC-2.11□□□□□ -2.75
HMGB1P09429 MIR6502-201ENST00000617296 76 ntBASIC-2.11□□□□□ -2.75
HMGB1P09429 MIR6874-201ENST00000635894 71 ntBASIC-2.11□□□□□ -2.75
HMGB1P09429 MIR1246-201ENST00000636535 73 ntBASIC-2.11□□□□□ -2.75
HMGB1P09429 Y_RNA.93-201ENST00000363066 109 ntBASIC-2.12□□□□□ -2.75
HMGB1P09429 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-2.12□□□□□ -2.75
HMGB1P09429 AL450471.1-201ENST00000447509 127 ntBASIC-2.13□□□□□ -2.75
HMGB1P09429 FAS-AS1.1-201ENST00000615327 126 ntBASIC-2.13□□□□□ -2.75
HMGB1P09429 Y_RNA.818-201ENST00000618813 71 ntBASIC-2.13□□□□□ -2.75
HMGB1P09429 Y_RNA.190-201ENST00000363964 101 ntBASIC-2.14□□□□□ -2.75
HMGB1P09429 RNU6-106P-201ENST00000384405 107 ntBASIC-2.14□□□□□ -2.75
HMGB1P09429 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-2.14□□□□□ -2.75
HMGB1P09429 RNU6-1238P-201ENST00000517215 102 ntBASIC-2.14□□□□□ -2.75
HMGB1P09429 MIR4490-201ENST00000582647 84 ntBASIC-2.14□□□□□ -2.75
HMGB1P09429 SNORA19-201ENST00000384737 128 ntBASIC-2.15□□□□□ -2.75
HMGB1P09429 RNU7-153P-201ENST00000516455 62 ntBASIC-2.15□□□□□ -2.75
HMGB1P09429 MIR6129-201ENST00000616087 109 ntBASIC-2.15□□□□□ -2.75
HMGB1P09429 MIR365A-201ENST00000362260 87 ntBASIC-2.16□□□□□ -2.76
HMGB1P09429 Y_RNA.232-201ENST00000364369 96 ntBASIC-2.16□□□□□ -2.76
HMGB1P09429 RNU6-732P-201ENST00000516033 103 ntBASIC-2.16□□□□□ -2.76
HMGB1P09429 MIR4441-201ENST00000582623 100 ntBASIC-2.16□□□□□ -2.76
HMGB1P09429 AL365222.1-201ENST00000614661 98 ntBASIC-2.16□□□□□ -2.76
HMGB1P09429 RNU6-226P-201ENST00000363778 107 ntBASIC-2.17□□□□□ -2.76
HMGB1P09429 Y_RNA.348-201ENST00000365403 103 ntBASIC-2.17□□□□□ -2.76
HMGB1P09429 MIR519A2-201ENST00000384990 87 ntBASIC-2.17□□□□□ -2.76
HMGB1P09429 MIR5683-201ENST00000636514 76 ntBASIC-2.18□□□□□ -2.76
HMGB1P09429 MIR521-2-201ENST00000384818 87 ntBASIC-2.19□□□□□ -2.76
HMGB1P09429 RNU6-518P-201ENST00000516056 96 ntBASIC-2.19□□□□□ -2.76
HMGB1P09429 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-2.19□□□□□ -2.76
HMGB1P09429 RNA5SP331-201ENST00000364986 107 ntBASIC-2.2□□□□□ -2.76
HMGB1P09429 RNU6-158P-201ENST00000517104 100 ntBASIC-2.22□□□□□ -2.76
HMGB1P09429 AP002795.1-201ENST00000534879 84 ntBASIC-2.22□□□□□ -2.76
HMGB1P09429 RNU6-1056P-201ENST00000383996 107 ntBASIC-2.24□□□□□ -2.77
HMGB1P09429 SNORD19-201ENST00000391191 68 ntBASIC-2.24□□□□□ -2.77
HMGB1P09429 Y_RNA.606-201ENST00000410579 103 ntBASIC-2.25□□□□□ -2.77
HMGB1P09429 RPL35AP4-201ENST00000412007 102 ntBASIC-2.25□□□□□ -2.77
HMGB1P09429 AL021921.1-201ENST00000442774 93 ntBASIC-2.25□□□□□ -2.77
HMGB1P09429 AC090616.4-201ENST00000448026 115 ntBASIC-2.25□□□□□ -2.77
HMGB1P09429 RNU7-88P-201ENST00000458752 63 ntBASIC-2.25□□□□□ -2.77
HMGB1P09429 RNU6-168P-201ENST00000516189 101 ntBASIC-2.25□□□□□ -2.77
HMGB1P09429 U7.5-201ENST00000517224 61 ntBASIC-2.26□□□□□ -2.77
HMGB1P09429 MIR519C-201ENST00000385053 87 ntBASIC-2.27□□□□□ -2.77
HMGB1P09429 Y_RNA.616-201ENST00000410835 95 ntBASIC-2.27□□□□□ -2.77
HMGB1P09429 RNU6-752P-201ENST00000516376 102 ntBASIC-2.27□□□□□ -2.77
HMGB1P09429 MIR6739-201ENST00000622461 75 ntBASIC-2.28□□□□□ -2.77
HMGB1P09429 RNU6-766P-201ENST00000362478 107 ntBASIC-2.29□□□□□ -2.78
HMGB1P09429 RNU6-681P-201ENST00000364012 104 ntBASIC-2.29□□□□□ -2.78
HMGB1P09429 Y_RNA.544-201ENST00000384650 113 ntBASIC-2.29□□□□□ -2.78
HMGB1P09429 MIR548H1-201ENST00000408610 102 ntBASIC-2.29□□□□□ -2.78
HMGB1P09429 MIR1468-201ENST00000410600 86 ntBASIC-2.29□□□□□ -2.78
HMGB1P09429 SNORD115-27-201ENST00000364430 82 ntBASIC-2.3□□□□□ -2.78
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms