Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
Trim11Q99PQ2 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim11Q99PQ2 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trim11Q99PQ2 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim11Q99PQ2 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim11Q99PQ2 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Trim11Q99PQ2 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Trim11Q99PQ2 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trim11Q99PQ2 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC18.21■□□□□ 0.51
Trim11Q99PQ2 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim11Q99PQ2 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim11Q99PQ2 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim11Q99PQ2 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim11Q99PQ2 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Trim11Q99PQ2 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC18.21■□□□□ 0.51
Trim11Q99PQ2 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim11Q99PQ2 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim11Q99PQ2 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
Trim11Q99PQ2 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Prob1-201ENSMUST00000097619 3021 ntBASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Trim11Q99PQ2 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 AC133083.1-201ENSMUST00000221736 2209 ntBASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim11Q99PQ2 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 AC114585.2-202ENSMUST00000228094 426 ntBASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim11Q99PQ2 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Trim11Q99PQ2 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Trim11Q99PQ2 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim11Q99PQ2 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim11Q99PQ2 Gm38327-201ENSMUST00000195852 1755 ntBASIC18.17■□□□□ 0.5
Trim11Q99PQ2 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC18.17■□□□□ 0.5
Trim11Q99PQ2 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
Trim11Q99PQ2 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms