Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Gm25925-201ENSMUST00000158314 306 ntBASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Gm19164-201ENSMUST00000210667 640 ntBASIC21.84■■□□□ 1.09
Usp40Q8BWR4 AC225888.1-201ENSMUST00000227184 728 ntBASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Rbfox2-206ENSMUST00000227314 1810 ntBASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
Usp40Q8BWR4 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC21.83■■□□□ 1.09
Usp40Q8BWR4 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.09
Usp40Q8BWR4 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC21.83■■□□□ 1.09
Usp40Q8BWR4 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Usp40Q8BWR4 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Usp40Q8BWR4 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
Usp40Q8BWR4 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Usp40Q8BWR4 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC21.83■■□□□ 1.09
Usp40Q8BWR4 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC21.83■■□□□ 1.09
Usp40Q8BWR4 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC21.83■■□□□ 1.09
Usp40Q8BWR4 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Usp40Q8BWR4 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Usp40Q8BWR4 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Usp40Q8BWR4 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Usp40Q8BWR4 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC21.83■■□□□ 1.08
Usp40Q8BWR4 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
Usp40Q8BWR4 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Usp40Q8BWR4 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Gm23935-201ENSMUST00000102303 57 ntBASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Gm24270-201ENSMUST00000102326 57 ntBASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Gm24245-201ENSMUST00000157318 57 ntBASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Gm6736-201ENSMUST00000166583 948 ntBASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Grk6-207ENSMUST00000225925 2769 ntBASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
Usp40Q8BWR4 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Usp40Q8BWR4 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Usp40Q8BWR4 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Usp40Q8BWR4 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Usp40Q8BWR4 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Usp40Q8BWR4 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Usp40Q8BWR4 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Usp40Q8BWR4 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Usp40Q8BWR4 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
Usp40Q8BWR4 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC21.8■■□□□ 1.08
Usp40Q8BWR4 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Usp40Q8BWR4 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Usp40Q8BWR4 Mir3113-201ENSMUST00000175478 76 ntBASIC21.8■■□□□ 1.08
Usp40Q8BWR4 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Usp40Q8BWR4 Gm5253-201ENSMUST00000187104 1025 ntBASIC21.8■■□□□ 1.08
Usp40Q8BWR4 Gm2756-201ENSMUST00000195851 400 ntBASIC21.8■■□□□ 1.08
Usp40Q8BWR4 Gm44945-201ENSMUST00000206764 1187 ntBASIC21.8■■□□□ 1.08
Usp40Q8BWR4 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms