Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC13.17□□□□□ -0.3
Sdc1P18828 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC13.17□□□□□ -0.3
Sdc1P18828 Gm27000-201ENSMUST00000182943 842 ntBASIC13.17□□□□□ -0.3
Sdc1P18828 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC13.17□□□□□ -0.3
Sdc1P18828 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
Sdc1P18828 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
Sdc1P18828 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC13.17□□□□□ -0.3
Sdc1P18828 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
Sdc1P18828 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Sdc1P18828 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Sdc1P18828 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Sdc1P18828 Gm27454-201ENSMUST00000185090 204 ntBASIC13.16□□□□□ -0.3
Sdc1P18828 Gm7291-201ENSMUST00000199147 382 ntBASIC13.16□□□□□ -0.3
Sdc1P18828 Gm7514-201ENSMUST00000209475 934 ntBASIC13.16□□□□□ -0.3
Sdc1P18828 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Sdc1P18828 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC13.16□□□□□ -0.3
Sdc1P18828 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC13.16□□□□□ -0.3
Sdc1P18828 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sdc1P18828 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sdc1P18828 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sdc1P18828 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sdc1P18828 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sdc1P18828 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC13.15□□□□□ -0.3
Sdc1P18828 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC13.15□□□□□ -0.3
Sdc1P18828 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sdc1P18828 Gm38058-201ENSMUST00000194323 4368 ntBASIC13.15□□□□□ -0.3
Sdc1P18828 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sdc1P18828 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Sdc1P18828 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC13.15□□□□□ -0.3
Sdc1P18828 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sdc1P18828 Gm10138-203ENSMUST00000206952 366 ntBASIC13.15□□□□□ -0.3
Sdc1P18828 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Sdc1P18828 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Sdc1P18828 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sdc1P18828 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sdc1P18828 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Sdc1P18828 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sdc1P18828 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC13.15□□□□□ -0.3
Sdc1P18828 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sdc1P18828 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC13.15□□□□□ -0.3
Sdc1P18828 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sdc1P18828 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Sdc1P18828 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sdc1P18828 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC13.15□□□□□ -0.31
Sdc1P18828 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Sdc1P18828 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC13.14□□□□□ -0.31
Sdc1P18828 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sdc1P18828 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sdc1P18828 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sdc1P18828 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC13.14□□□□□ -0.31
Sdc1P18828 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sdc1P18828 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sdc1P18828 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC13.14□□□□□ -0.31
Sdc1P18828 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sdc1P18828 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Sdc1P18828 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC13.14□□□□□ -0.31
Sdc1P18828 Gm17661-201ENSMUST00000170317 270 ntBASIC13.14□□□□□ -0.31
Sdc1P18828 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Sdc1P18828 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms