Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Msx1P13297 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Slc35b2-202ENSMUST00000223987 1766 ntBASIC15.12■□□□□ 0.01
Msx1P13297 Gm12350-201ENSMUST00000121208 462 ntBASIC15.12■□□□□ 0.01
Msx1P13297 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC15.12■□□□□ 0.01
Msx1P13297 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC15.12■□□□□ 0.01
Msx1P13297 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
Msx1P13297 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC15.12■□□□□ 0.01
Msx1P13297 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msx1P13297 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 Gm18856-201ENSMUST00000178096 1374 ntBASIC15.11■□□□□ 0.01
Msx1P13297 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC15.11■□□□□ 0.01
Msx1P13297 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Msx1P13297 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC15.11■□□□□ 0.01
Msx1P13297 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Msx1P13297 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC15.11■□□□□ 0.01
Msx1P13297 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC15.11■□□□□ 0.01
Msx1P13297 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 Gm5364-201ENSMUST00000216789 889 ntBASIC15.11■□□□□ 0.01
Msx1P13297 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Msx1P13297 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Msx1P13297 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC15.11■□□□□ 0.01
Msx1P13297 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 Ddx41-204ENSMUST00000224765 2199 ntBASIC15.11■□□□□ 0.01
Msx1P13297 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC15.11■□□□□ 0.01
Msx1P13297 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msx1P13297 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Gm20628-201ENSMUST00000177363 3215 ntBASIC15.1■□□□□ 0.01
Msx1P13297 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC15.1■□□□□ 0.01
Msx1P13297 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC15.1■□□□□ 0.01
Msx1P13297 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC15.1■□□□□ 0.01
Msx1P13297 Gm27867-201ENSMUST00000184778 125 ntBASIC15.1■□□□□ 0.01
Msx1P13297 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
Msx1P13297 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Msx1P13297 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.1■□□□□ 0.01
Msx1P13297 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Msx1P13297 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
Msx1P13297 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Msx1P13297 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Msx1P13297 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Msx1P13297 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC15.09■□□□□ 0.01
Msx1P13297 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Msx1P13297 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC15.09■□□□□ 0.01
Msx1P13297 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC15.09■□□□□ 0.01
Msx1P13297 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Msx1P13297 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC15.09■□□□□ 0.01
Msx1P13297 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Msx1P13297 Gm27702-201ENSMUST00000184512 56 ntBASIC15.09■□□□□ 0.01
Msx1P13297 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Msx1P13297 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms