Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 MIR6739-201ENST00000622461 75 ntBASIC1.3□□□□□ -2.2
ZC3H4Q9UPT8 MIR548AE1-201ENST00000583292 70 ntBASIC1.29□□□□□ -2.2
ZC3H4Q9UPT8 RNA5SP299-201ENST00000391203 116 ntBASIC1.28□□□□□ -2.2
ZC3H4Q9UPT8 AL157398.1-201ENST00000452981 186 ntBASIC1.28□□□□□ -2.2
ZC3H4Q9UPT8 HAR1A.1-201ENST00000459583 118 ntBASIC1.28□□□□□ -2.2
ZC3H4Q9UPT8 SCARNA17.3-201ENST00000516381 125 ntBASIC1.28□□□□□ -2.2
ZC3H4Q9UPT8 SNORA70.25-201ENST00000612741 95 ntBASIC1.28□□□□□ -2.2
ZC3H4Q9UPT8 Y_RNA.250-201ENST00000364542 110 ntBASIC1.27□□□□□ -2.21
ZC3H4Q9UPT8 RNU6-1089P-201ENST00000516473 104 ntBASIC1.27□□□□□ -2.21
ZC3H4Q9UPT8 MIR1285-1-201ENST00000408593 84 ntBASIC1.26□□□□□ -2.21
ZC3H4Q9UPT8 AC110620.1-201ENST00000416042 228 ntBASIC1.26□□□□□ -2.21
ZC3H4Q9UPT8 SNORA25.18-201ENST00000607153 114 ntBASIC1.26□□□□□ -2.21
ZC3H4Q9UPT8 SNORA63.6-201ENST00000364921 119 ntBASIC1.25□□□□□ -2.21
ZC3H4Q9UPT8 MTND4LP19-201ENST00000403051 166 ntBASIC1.25□□□□□ -2.21
ZC3H4Q9UPT8 AC092634.7-201ENST00000621022 103 ntBASIC1.25□□□□□ -2.21
ZC3H4Q9UPT8 Y_RNA.115-201ENST00000363272 98 ntBASIC1.24□□□□□ -2.21
ZC3H4Q9UPT8 RNU4-38P-201ENST00000364472 129 ntBASIC1.23□□□□□ -2.21
ZC3H4Q9UPT8 RNA5SP517-201ENST00000364724 117 ntBASIC1.23□□□□□ -2.21
ZC3H4Q9UPT8 MIR521-2-201ENST00000384818 87 ntBASIC1.23□□□□□ -2.21
ZC3H4Q9UPT8 MIR140-201ENST00000385282 100 ntBASIC1.23□□□□□ -2.21
ZC3H4Q9UPT8 MIR3973-201ENST00000579824 107 ntBASIC1.23□□□□□ -2.21
ZC3H4Q9UPT8 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
ZC3H4Q9UPT8 RNA5SP215-201ENST00000363440 122 ntBASIC1.22□□□□□ -2.21
ZC3H4Q9UPT8 RNU6-499P-201ENST00000365615 107 ntBASIC1.22□□□□□ -2.21
ZC3H4Q9UPT8 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.22□□□□□ -2.21
ZC3H4Q9UPT8 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.22□□□□□ -2.21
ZC3H4Q9UPT8 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC1.22□□□□□ -2.21
ZC3H4Q9UPT8 RNU6-302P-201ENST00000365249 107 ntBASIC1.21□□□□□ -2.22
ZC3H4Q9UPT8 AC069271.1-201ENST00000445577 156 ntBASIC1.21□□□□□ -2.22
ZC3H4Q9UPT8 SCARNA21.1-201ENST00000515996 128 ntBASIC1.21□□□□□ -2.22
ZC3H4Q9UPT8 ACA64.5-201ENST00000516207 127 ntBASIC1.21□□□□□ -2.22
ZC3H4Q9UPT8 uc_338.10-201ENST00000621872 182 ntBASIC1.21□□□□□ -2.22
ZC3H4Q9UPT8 MIR924-201ENST00000638017 53 ntBASIC1.21□□□□□ -2.22
ZC3H4Q9UPT8 SNORA25.5-201ENST00000363782 126 ntBASIC1.2□□□□□ -2.22
ZC3H4Q9UPT8 SNORA33.1-201ENST00000364957 130 ntBASIC1.2□□□□□ -2.22
ZC3H4Q9UPT8 MIR582-201ENST00000365731 98 ntBASIC1.2□□□□□ -2.22
ZC3H4Q9UPT8 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
ZC3H4Q9UPT8 SNORD114-21-201ENST00000606412 72 ntBASIC1.2□□□□□ -2.22
ZC3H4Q9UPT8 MIR6513-201ENST00000621188 64 ntBASIC1.2□□□□□ -2.22
ZC3H4Q9UPT8 AC010487.4-201ENST00000637027 61 ntBASIC1.2□□□□□ -2.22
ZC3H4Q9UPT8 RNA5SP192-201ENST00000364404 120 ntBASIC1.19□□□□□ -2.22
ZC3H4Q9UPT8 SNORA15B-2-201ENST00000384058 135 ntBASIC1.19□□□□□ -2.22
ZC3H4Q9UPT8 SNORA15B-1-201ENST00000384334 135 ntBASIC1.19□□□□□ -2.22
ZC3H4Q9UPT8 MIR633-201ENST00000384821 98 ntBASIC1.19□□□□□ -2.22
ZC3H4Q9UPT8 MIR608-201ENST00000384820 100 ntBASIC1.18□□□□□ -2.22
ZC3H4Q9UPT8 MIR548E-201ENST00000408287 88 ntBASIC1.18□□□□□ -2.22
ZC3H4Q9UPT8 MIR4714-201ENST00000580728 77 ntBASIC1.18□□□□□ -2.22
ZC3H4Q9UPT8 RNU6-669P-201ENST00000365575 107 ntBASIC1.17□□□□□ -2.22
ZC3H4Q9UPT8 RNA5SP330-201ENST00000517096 96 ntBASIC1.17□□□□□ -2.22
ZC3H4Q9UPT8 MIR630-201ENST00000384957 97 ntBASIC1.16□□□□□ -2.22
ZC3H4Q9UPT8 SNORD71-201ENST00000411292 86 ntBASIC1.16□□□□□ -2.22
ZC3H4Q9UPT8 RNA5SP121-201ENST00000516537 101 ntBASIC1.16□□□□□ -2.22
ZC3H4Q9UPT8 AC103810.9-201ENST00000606688 112 ntBASIC1.16□□□□□ -2.22
ZC3H4Q9UPT8 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC1.16□□□□□ -2.22
ZC3H4Q9UPT8 RNA5SP257-201ENST00000363023 116 ntBASIC1.15□□□□□ -2.22
ZC3H4Q9UPT8 RNA5SP62-201ENST00000363457 110 ntBASIC1.15□□□□□ -2.22
ZC3H4Q9UPT8 SNORD114-23-201ENST00000363536 72 ntBASIC1.15□□□□□ -2.22
ZC3H4Q9UPT8 HMGN2P22-201ENST00000427588 175 ntBASIC1.15□□□□□ -2.22
ZC3H4Q9UPT8 Y_RNA.423-201ENST00000384057 113 ntBASIC1.15□□□□□ -2.23
ZC3H4Q9UPT8 AL627230.5-201ENST00000619807 58 ntBASIC1.15□□□□□ -2.23
ZC3H4Q9UPT8 U6.96-201ENST00000636425 70 ntBASIC1.15□□□□□ -2.23
ZC3H4Q9UPT8 Y_RNA.125-201ENST00000363371 111 ntBASIC1.14□□□□□ -2.23
ZC3H4Q9UPT8 MIR517B-201ENST00000385102 67 ntBASIC1.14□□□□□ -2.23
ZC3H4Q9UPT8 PSMC1P5-201ENST00000512850 177 ntBASIC1.14□□□□□ -2.23
ZC3H4Q9UPT8 MIR4698-201ENST00000577795 80 ntBASIC1.14□□□□□ -2.23
ZC3H4Q9UPT8 MIR466-201ENST00000580653 84 ntBASIC1.14□□□□□ -2.23
ZC3H4Q9UPT8 RNU6-940P-201ENST00000363433 104 ntBASIC1.13□□□□□ -2.23
ZC3H4Q9UPT8 SNORA40.8-201ENST00000411034 126 ntBASIC1.13□□□□□ -2.23
ZC3H4Q9UPT8 RNU6-229P-201ENST00000516614 102 ntBASIC1.13□□□□□ -2.23
ZC3H4Q9UPT8 MIR936-201ENST00000401264 98 ntBASIC1.12□□□□□ -2.23
ZC3H4Q9UPT8 AC098934.3-201ENST00000430450 190 ntBASIC1.12□□□□□ -2.23
ZC3H4Q9UPT8 Y_RNA.633-201ENST00000459107 95 ntBASIC1.12□□□□□ -2.23
ZC3H4Q9UPT8 MIR5706-201ENST00000579841 80 ntBASIC1.12□□□□□ -2.23
ZC3H4Q9UPT8 SNORA2A-201ENST00000383885 135 ntBASIC1.11□□□□□ -2.23
ZC3H4Q9UPT8 RNU6-110P-201ENST00000384508 104 ntBASIC1.11□□□□□ -2.23
ZC3H4Q9UPT8 RNU6-92P-201ENST00000605893 104 ntBASIC1.11□□□□□ -2.23
ZC3H4Q9UPT8 RNU1-29P-201ENST00000606574 126 ntBASIC1.11□□□□□ -2.23
ZC3H4Q9UPT8 U2.7-201ENST00000619197 100 ntBASIC1.11□□□□□ -2.23
ZC3H4Q9UPT8 MIR330-201ENST00000362196 94 ntBASIC1.1□□□□□ -2.23
ZC3H4Q9UPT8 RNU6-1079P-201ENST00000362861 110 ntBASIC1.1□□□□□ -2.23
ZC3H4Q9UPT8 SNORD118-201ENST00000363593 134 ntBASIC1.1□□□□□ -2.23
ZC3H4Q9UPT8 U7.6-201ENST00000610841 64 ntBASIC1.1□□□□□ -2.23
ZC3H4Q9UPT8 MIR20A-201ENST00000362279 71 ntBASIC1.09□□□□□ -2.24
ZC3H4Q9UPT8 MIR516B1-201ENST00000385211 90 ntBASIC1.09□□□□□ -2.24
ZC3H4Q9UPT8 SNORD113-2-201ENST00000391082 72 ntBASIC1.09□□□□□ -2.24
ZC3H4Q9UPT8 SNORA75.1-201ENST00000391130 148 ntBASIC1.09□□□□□ -2.24
ZC3H4Q9UPT8 MIR8087-201ENST00000612745 78 ntBASIC1.09□□□□□ -2.24
ZC3H4Q9UPT8 RNU4-54P-201ENST00000516428 129 ntBASIC1.08□□□□□ -2.24
ZC3H4Q9UPT8 RNU6-35P-201ENST00000384530 107 ntBASIC1.07□□□□□ -2.24
ZC3H4Q9UPT8 AC244090.1-201ENST00000441884 93 ntBASIC1.07□□□□□ -2.24
ZC3H4Q9UPT8 MIR4653-201ENST00000585107 83 ntBASIC1.07□□□□□ -2.24
ZC3H4Q9UPT8 RPL39P28-201ENST00000465655 155 ntBASIC1.06□□□□□ -2.24
ZC3H4Q9UPT8 RNU7-174P-201ENST00000516248 59 ntBASIC1.06□□□□□ -2.24
ZC3H4Q9UPT8 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC1.06□□□□□ -2.24
ZC3H4Q9UPT8 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
ZC3H4Q9UPT8 RNU6-698P-201ENST00000363523 107 ntBASIC1.05□□□□□ -2.24
ZC3H4Q9UPT8 SNORD114-29-201ENST00000364819 70 ntBASIC1.05□□□□□ -2.24
ZC3H4Q9UPT8 RNU6-34P-201ENST00000364874 107 ntBASIC1.05□□□□□ -2.24
ZC3H4Q9UPT8 MIR518A1-201ENST00000385068 85 ntBASIC1.05□□□□□ -2.24
ZC3H4Q9UPT8 AC079150.2-201ENST00000443733 78 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 274.5 ms