Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MIR518B-201ENST00000385127 83 ntBASIC-1.09□□□□□ -2.58
VPS28Q9UK41 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-1.09□□□□□ -2.58
VPS28Q9UK41 TMSB4XP3-201ENST00000445144 114 ntBASIC-1.09□□□□□ -2.58
VPS28Q9UK41 MIR6854-201ENST00000614935 69 ntBASIC-1.09□□□□□ -2.58
VPS28Q9UK41 Y_RNA.818-201ENST00000618813 71 ntBASIC-1.09□□□□□ -2.58
VPS28Q9UK41 RNU6-382P-201ENST00000365181 106 ntBASIC-1.1□□□□□ -2.59
VPS28Q9UK41 SNORD83B-201ENST00000386745 93 ntBASIC-1.1□□□□□ -2.59
VPS28Q9UK41 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.1□□□□□ -2.59
VPS28Q9UK41 MIR5704-201ENST00000584029 77 ntBASIC-1.1□□□□□ -2.59
VPS28Q9UK41 Y_RNA.93-201ENST00000363066 109 ntBASIC-1.11□□□□□ -2.59
VPS28Q9UK41 RNU6-554P-201ENST00000410466 106 ntBASIC-1.11□□□□□ -2.59
VPS28Q9UK41 AL365222.1-201ENST00000614661 98 ntBASIC-1.11□□□□□ -2.59
VPS28Q9UK41 RNU6-337P-201ENST00000391243 106 ntBASIC-1.12□□□□□ -2.59
VPS28Q9UK41 RNU6-592P-201ENST00000411333 103 ntBASIC-1.12□□□□□ -2.59
VPS28Q9UK41 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.12□□□□□ -2.59
VPS28Q9UK41 MIR4773-1-201ENST00000637203 78 ntBASIC-1.12□□□□□ -2.59
VPS28Q9UK41 RNU6-106P-201ENST00000384405 107 ntBASIC-1.13□□□□□ -2.59
VPS28Q9UK41 MT-TR-201ENST00000387439 65 ntBASIC-1.13□□□□□ -2.59
VPS28Q9UK41 MIR4796-201ENST00000580742 81 ntBASIC-1.13□□□□□ -2.59
VPS28Q9UK41 U6.96-201ENST00000636425 70 ntBASIC-1.13□□□□□ -2.59
VPS28Q9UK41 SNORD115-23-201ENST00000364461 82 ntBASIC-1.14□□□□□ -2.59
VPS28Q9UK41 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.14□□□□□ -2.59
VPS28Q9UK41 MIR1236-201ENST00000408340 102 ntBASIC-1.14□□□□□ -2.59
VPS28Q9UK41 MIR3179-1-201ENST00000578940 84 ntBASIC-1.14□□□□□ -2.59
VPS28Q9UK41 MIR3179-2-201ENST00000579107 84 ntBASIC-1.14□□□□□ -2.59
VPS28Q9UK41 MIR3179-3-201ENST00000579566 84 ntBASIC-1.14□□□□□ -2.59
VPS28Q9UK41 MIR6129-201ENST00000616087 109 ntBASIC-1.14□□□□□ -2.59
VPS28Q9UK41 MIR3179-4-201ENST00000617599 84 ntBASIC-1.14□□□□□ -2.59
VPS28Q9UK41 RNU6-834P-201ENST00000362367 110 ntBASIC-1.15□□□□□ -2.59
VPS28Q9UK41 RNU6-824P-201ENST00000363724 104 ntBASIC-1.15□□□□□ -2.59
VPS28Q9UK41 RNU6-1056P-201ENST00000383996 107 ntBASIC-1.15□□□□□ -2.59
VPS28Q9UK41 MIR548M-201ENST00000408260 86 ntBASIC-1.15□□□□□ -2.59
VPS28Q9UK41 MIR4324-201ENST00000584846 72 ntBASIC-1.15□□□□□ -2.59
VPS28Q9UK41 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.16□□□□□ -2.6
VPS28Q9UK41 RNU6-260P-201ENST00000384092 107 ntBASIC-1.16□□□□□ -2.6
VPS28Q9UK41 Y_RNA.484-201ENST00000384389 103 ntBASIC-1.16□□□□□ -2.6
VPS28Q9UK41 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.16□□□□□ -2.6
VPS28Q9UK41 MIR6738-201ENST00000619620 64 ntBASIC-1.16□□□□□ -2.6
VPS28Q9UK41 SNORD74.6-201ENST00000364796 70 ntBASIC-1.17□□□□□ -2.6
VPS28Q9UK41 RNU6-274P-201ENST00000459566 107 ntBASIC-1.17□□□□□ -2.6
VPS28Q9UK41 SNORD22.1-201ENST00000516331 125 ntBASIC-1.17□□□□□ -2.6
VPS28Q9UK41 RNU6-109P-201ENST00000516364 107 ntBASIC-1.17□□□□□ -2.6
VPS28Q9UK41 RNU6-184P-201ENST00000516514 107 ntBASIC-1.17□□□□□ -2.6
VPS28Q9UK41 MIR6509-201ENST00000614603 85 ntBASIC-1.17□□□□□ -2.6
VPS28Q9UK41 U7.3-201ENST00000616123 62 ntBASIC-1.17□□□□□ -2.6
VPS28Q9UK41 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.18□□□□□ -2.6
VPS28Q9UK41 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.18□□□□□ -2.6
VPS28Q9UK41 SNORA19-201ENST00000384737 128 ntBASIC-1.18□□□□□ -2.6
VPS28Q9UK41 snoU13.17-201ENST00000458802 104 ntBASIC-1.18□□□□□ -2.6
VPS28Q9UK41 RNA5SP67-201ENST00000516422 131 ntBASIC-1.18□□□□□ -2.6
VPS28Q9UK41 RNU6-881P-201ENST00000516813 102 ntBASIC-1.18□□□□□ -2.6
VPS28Q9UK41 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.19□□□□□ -2.6
VPS28Q9UK41 RNU6-162P-201ENST00000516228 103 ntBASIC-1.19□□□□□ -2.6
VPS28Q9UK41 YWHAEP3-201ENST00000582767 121 ntBASIC-1.19□□□□□ -2.6
VPS28Q9UK41 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-1.19□□□□□ -2.6
VPS28Q9UK41 SNORA2.1-201ENST00000363089 137 ntBASIC-1.2□□□□□ -2.6
VPS28Q9UK41 RNU6-1117P-201ENST00000384525 104 ntBASIC-1.2□□□□□ -2.6
VPS28Q9UK41 RNU6-1168P-201ENST00000390831 104 ntBASIC-1.2□□□□□ -2.6
VPS28Q9UK41 AL691482.2-201ENST00000457453 84 ntBASIC-1.2□□□□□ -2.6
VPS28Q9UK41 RNU6-589P-201ENST00000516485 107 ntBASIC-1.2□□□□□ -2.6
VPS28Q9UK41 U6.81-201ENST00000612550 106 ntBASIC-1.2□□□□□ -2.6
VPS28Q9UK41 MIR8068-201ENST00000618032 68 ntBASIC-1.2□□□□□ -2.6
VPS28Q9UK41 RNU6-766P-201ENST00000362478 107 ntBASIC-1.21□□□□□ -2.6
VPS28Q9UK41 SNORA62.4-201ENST00000365504 151 ntBASIC-1.21□□□□□ -2.6
VPS28Q9UK41 RNU6-22P-201ENST00000384355 107 ntBASIC-1.21□□□□□ -2.6
VPS28Q9UK41 AL500527.2-201ENST00000454105 95 ntBASIC-1.21□□□□□ -2.6
VPS28Q9UK41 RNU6-10P-201ENST00000384036 107 ntBASIC-1.22□□□□□ -2.6
VPS28Q9UK41 Y_RNA.544-201ENST00000384650 113 ntBASIC-1.22□□□□□ -2.6
VPS28Q9UK41 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.22□□□□□ -2.6
VPS28Q9UK41 RNU6-721P-201ENST00000410155 105 ntBASIC-1.22□□□□□ -2.6
VPS28Q9UK41 RNA5SP470-201ENST00000516463 106 ntBASIC-1.22□□□□□ -2.6
VPS28Q9UK41 MIR203A-201ENST00000384836 110 ntBASIC-1.23□□□□□ -2.61
VPS28Q9UK41 AC022137.1-201ENST00000483735 151 ntBASIC-1.23□□□□□ -2.61
VPS28Q9UK41 RNA5SP147-201ENST00000516493 109 ntBASIC-1.23□□□□□ -2.61
VPS28Q9UK41 MIR3657-201ENST00000584818 117 ntBASIC-1.23□□□□□ -2.61
VPS28Q9UK41 RNU6-158P-201ENST00000517104 100 ntBASIC-1.24□□□□□ -2.61
VPS28Q9UK41 MIR378F-201ENST00000578143 78 ntBASIC-1.24□□□□□ -2.61
VPS28Q9UK41 MIR4499-201ENST00000584834 69 ntBASIC-1.24□□□□□ -2.61
VPS28Q9UK41 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.25□□□□□ -2.61
VPS28Q9UK41 MIR587-201ENST00000384845 96 ntBASIC-1.25□□□□□ -2.61
VPS28Q9UK41 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.25□□□□□ -2.61
VPS28Q9UK41 AP000533.3-201ENST00000447704 118 ntBASIC-1.25□□□□□ -2.61
VPS28Q9UK41 AL450471.1-201ENST00000447509 127 ntBASIC-1.26□□□□□ -2.61
VPS28Q9UK41 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.26□□□□□ -2.61
VPS28Q9UK41 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.26□□□□□ -2.61
VPS28Q9UK41 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.27□□□□□ -2.61
VPS28Q9UK41 RNU6-24P-201ENST00000384440 107 ntBASIC-1.27□□□□□ -2.61
VPS28Q9UK41 RNU6-1154P-201ENST00000391001 104 ntBASIC-1.27□□□□□ -2.61
VPS28Q9UK41 RNU6-479P-201ENST00000516348 105 ntBASIC-1.27□□□□□ -2.61
VPS28Q9UK41 uc_338.19-201ENST00000616808 99 ntBASIC-1.27□□□□□ -2.61
VPS28Q9UK41 RNU6-905P-201ENST00000384434 107 ntBASIC-1.28□□□□□ -2.61
VPS28Q9UK41 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.28□□□□□ -2.61
VPS28Q9UK41 RNU6-313P-201ENST00000516317 112 ntBASIC-1.28□□□□□ -2.61
VPS28Q9UK41 AC090617.8-201ENST00000623339 167 ntBASIC-1.28□□□□□ -2.61
VPS28Q9UK41 MIR2052-201ENST00000636055 55 ntBASIC-1.28□□□□□ -2.61
VPS28Q9UK41 RNU6-208P-201ENST00000362431 107 ntBASIC-1.29□□□□□ -2.62
VPS28Q9UK41 SNORD114-25-201ENST00000363742 72 ntBASIC-1.29□□□□□ -2.62
VPS28Q9UK41 SNORA33.1-201ENST00000364957 130 ntBASIC-1.29□□□□□ -2.62
VPS28Q9UK41 MIR517B-201ENST00000385102 67 ntBASIC-1.29□□□□□ -2.62
VPS28Q9UK41 MTATP8P2-201ENST00000435212 202 ntBASIC-1.29□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 173.7 ms