Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNU6-1089P-201ENST00000516473 104 ntBASIC1.15□□□□□ -2.23
LIMD1Q9UGP4 AL590095.2-201ENST00000604136 117 ntBASIC1.15□□□□□ -2.23
LIMD1Q9UGP4 SNORA2A-201ENST00000383885 135 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 AC069271.1-201ENST00000445577 156 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 Y_RNA.633-201ENST00000459107 95 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 ACA64.5-201ENST00000516207 127 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 MIR5000-201ENST00000577717 103 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 MIR4752-201ENST00000579672 72 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 AC211469.2-201ENST00000605461 205 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 SNORA25.18-201ENST00000607153 114 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 AL109933.3-201ENST00000619095 188 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 MIR373-201ENST00000362273 69 ntBASIC1.13□□□□□ -2.23
LIMD1Q9UGP4 Y_RNA.125-201ENST00000363371 111 ntBASIC1.13□□□□□ -2.23
LIMD1Q9UGP4 MIR1285-1-201ENST00000408593 84 ntBASIC1.13□□□□□ -2.23
LIMD1Q9UGP4 AC110620.1-201ENST00000416042 228 ntBASIC1.13□□□□□ -2.23
LIMD1Q9UGP4 SNORD2-201ENST00000459163 69 ntBASIC1.13□□□□□ -2.23
LIMD1Q9UGP4 MIR20A-201ENST00000362279 71 ntBASIC1.12□□□□□ -2.23
LIMD1Q9UGP4 HMGN2P22-201ENST00000427588 175 ntBASIC1.12□□□□□ -2.23
LIMD1Q9UGP4 AC244090.1-201ENST00000441884 93 ntBASIC1.12□□□□□ -2.23
LIMD1Q9UGP4 Y_RNA.374-201ENST00000365606 101 ntBASIC1.11□□□□□ -2.23
LIMD1Q9UGP4 MIR518A1-201ENST00000385068 85 ntBASIC1.11□□□□□ -2.23
LIMD1Q9UGP4 MIR548E-201ENST00000408287 88 ntBASIC1.11□□□□□ -2.23
LIMD1Q9UGP4 snoU13.13-201ENST00000458842 104 ntBASIC1.11□□□□□ -2.23
LIMD1Q9UGP4 RN7SL793P-201ENST00000583259 296 ntBASIC1.11□□□□□ -2.23
LIMD1Q9UGP4 MIR9-2-201ENST00000384838 87 ntBASIC1.1□□□□□ -2.23
LIMD1Q9UGP4 AL157398.1-201ENST00000452981 186 ntBASIC1.1□□□□□ -2.23
LIMD1Q9UGP4 RNU6-229P-201ENST00000516614 102 ntBASIC1.1□□□□□ -2.23
LIMD1Q9UGP4 RNU1-29P-201ENST00000606574 126 ntBASIC1.1□□□□□ -2.23
LIMD1Q9UGP4 SNORD114-21-201ENST00000606412 72 ntBASIC1.09□□□□□ -2.23
LIMD1Q9UGP4 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC1.09□□□□□ -2.24
LIMD1Q9UGP4 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.08□□□□□ -2.24
LIMD1Q9UGP4 MIR216A-201ENST00000385063 110 ntBASIC1.08□□□□□ -2.24
LIMD1Q9UGP4 RNA5SP299-201ENST00000391203 116 ntBASIC1.08□□□□□ -2.24
LIMD1Q9UGP4 CYP3A137P-201ENST00000562436 69 ntBASIC1.08□□□□□ -2.24
LIMD1Q9UGP4 SNORD114-29-201ENST00000364819 70 ntBASIC1.07□□□□□ -2.24
LIMD1Q9UGP4 PSMC1P5-201ENST00000512850 177 ntBASIC1.07□□□□□ -2.24
LIMD1Q9UGP4 RNU6-863P-201ENST00000515989 104 ntBASIC1.07□□□□□ -2.24
LIMD1Q9UGP4 MIR3973-201ENST00000579824 107 ntBASIC1.07□□□□□ -2.24
LIMD1Q9UGP4 MIR548C-201ENST00000384815 97 ntBASIC1.06□□□□□ -2.24
LIMD1Q9UGP4 SCARNA21.1-201ENST00000515996 128 ntBASIC1.06□□□□□ -2.24
LIMD1Q9UGP4 MIR582-201ENST00000365731 98 ntBASIC1.05□□□□□ -2.24
LIMD1Q9UGP4 SNORA33.1-201ENST00000364957 130 ntBASIC1.04□□□□□ -2.24
LIMD1Q9UGP4 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
LIMD1Q9UGP4 SNORA25.5-201ENST00000363782 126 ntBASIC1.03□□□□□ -2.24
LIMD1Q9UGP4 RNU4-38P-201ENST00000364472 129 ntBASIC1.03□□□□□ -2.24
LIMD1Q9UGP4 Y_RNA.423-201ENST00000384057 113 ntBASIC1.03□□□□□ -2.24
LIMD1Q9UGP4 AC098934.3-201ENST00000430450 190 ntBASIC1.03□□□□□ -2.24
LIMD1Q9UGP4 MIR6857-201ENST00000613267 93 ntBASIC1.03□□□□□ -2.24
LIMD1Q9UGP4 RNU6-940P-201ENST00000363433 104 ntBASIC1.02□□□□□ -2.25
LIMD1Q9UGP4 MIR517B-201ENST00000385102 67 ntBASIC1.02□□□□□ -2.25
LIMD1Q9UGP4 MIR532-201ENST00000385025 91 ntBASIC1.01□□□□□ -2.25
LIMD1Q9UGP4 U6.96-201ENST00000636425 70 ntBASIC1.01□□□□□ -2.25
LIMD1Q9UGP4 Y_RNA.30-201ENST00000362572 97 ntBASIC1□□□□□ -2.25
LIMD1Q9UGP4 RNU6-499P-201ENST00000365615 107 ntBASIC1□□□□□ -2.25
LIMD1Q9UGP4 MIR516B1-201ENST00000385211 90 ntBASIC1□□□□□ -2.25
LIMD1Q9UGP4 MIR4698-201ENST00000577795 80 ntBASIC1□□□□□ -2.25
LIMD1Q9UGP4 U2.7-201ENST00000619197 100 ntBASIC1□□□□□ -2.25
LIMD1Q9UGP4 SNORD113-2-201ENST00000391082 72 ntBASIC0.99□□□□□ -2.25
LIMD1Q9UGP4 MIR548V-201ENST00000584165 80 ntBASIC0.99□□□□□ -2.25
LIMD1Q9UGP4 MIR4653-201ENST00000585107 83 ntBASIC0.99□□□□□ -2.25
LIMD1Q9UGP4 AC243829.6-201ENST00000612652 106 ntBASIC0.99□□□□□ -2.25
LIMD1Q9UGP4 RNU6-698P-201ENST00000363523 107 ntBASIC0.98□□□□□ -2.25
LIMD1Q9UGP4 RNU6-34P-201ENST00000364874 107 ntBASIC0.98□□□□□ -2.25
LIMD1Q9UGP4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.98□□□□□ -2.25
LIMD1Q9UGP4 RNU6-92P-201ENST00000605893 104 ntBASIC0.97□□□□□ -2.25
LIMD1Q9UGP4 AC103810.9-201ENST00000606688 112 ntBASIC0.97□□□□□ -2.25
LIMD1Q9UGP4 MIR760-201ENST00000390220 80 ntBASIC0.96□□□□□ -2.26
LIMD1Q9UGP4 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
LIMD1Q9UGP4 RNU7-174P-201ENST00000516248 59 ntBASIC0.96□□□□□ -2.26
LIMD1Q9UGP4 RNU4-54P-201ENST00000516428 129 ntBASIC0.96□□□□□ -2.26
LIMD1Q9UGP4 MIR4677-201ENST00000584153 80 ntBASIC0.96□□□□□ -2.26
LIMD1Q9UGP4 MIR6755-201ENST00000619993 66 ntBASIC0.96□□□□□ -2.26
LIMD1Q9UGP4 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
LIMD1Q9UGP4 MIR4714-201ENST00000580728 77 ntBASIC0.95□□□□□ -2.26
LIMD1Q9UGP4 MIR548AD-201ENST00000584780 82 ntBASIC0.95□□□□□ -2.26
LIMD1Q9UGP4 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.94□□□□□ -2.26
LIMD1Q9UGP4 MIR193B-201ENST00000384907 83 ntBASIC0.94□□□□□ -2.26
LIMD1Q9UGP4 MIR501-201ENST00000390204 84 ntBASIC0.94□□□□□ -2.26
LIMD1Q9UGP4 RNU7-188P-201ENST00000517063 64 ntBASIC0.94□□□□□ -2.26
LIMD1Q9UGP4 AC084368.1-201ENST00000620935 65 ntBASIC0.94□□□□□ -2.26
LIMD1Q9UGP4 RNA5SP192-201ENST00000364404 120 ntBASIC0.93□□□□□ -2.26
LIMD1Q9UGP4 CYP3A54P-201ENST00000566950 75 ntBASIC0.93□□□□□ -2.26
LIMD1Q9UGP4 MIR1273G-201ENST00000577677 100 ntBASIC0.93□□□□□ -2.26
LIMD1Q9UGP4 RNA5SP128-201ENST00000365305 116 ntBASIC0.92□□□□□ -2.26
LIMD1Q9UGP4 AL021921.1-201ENST00000442774 93 ntBASIC0.92□□□□□ -2.26
LIMD1Q9UGP4 MIR630-201ENST00000384957 97 ntBASIC0.91□□□□□ -2.26
LIMD1Q9UGP4 RNU6-945P-201ENST00000383947 107 ntBASIC0.9□□□□□ -2.27
LIMD1Q9UGP4 RPL39P28-201ENST00000465655 155 ntBASIC0.9□□□□□ -2.27
LIMD1Q9UGP4 MIR6513-201ENST00000621188 64 ntBASIC0.9□□□□□ -2.27
LIMD1Q9UGP4 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.9□□□□□ -2.27
LIMD1Q9UGP4 RNU6-1232P-201ENST00000516299 86 ntBASIC0.89□□□□□ -2.27
LIMD1Q9UGP4 RNU6-122P-201ENST00000516818 107 ntBASIC0.89□□□□□ -2.27
LIMD1Q9UGP4 MIR466-201ENST00000580653 84 ntBASIC0.89□□□□□ -2.27
LIMD1Q9UGP4 MIR936-201ENST00000401264 98 ntBASIC0.87□□□□□ -2.27
LIMD1Q9UGP4 AC243829.3-201ENST00000622177 108 ntBASIC0.87□□□□□ -2.27
LIMD1Q9UGP4 SNORD44.1-201ENST00000363202 61 ntBASIC0.86□□□□□ -2.27
LIMD1Q9UGP4 Y_RNA.246-201ENST00000364495 108 ntBASIC0.85□□□□□ -2.27
LIMD1Q9UGP4 SNORA75.1-201ENST00000391130 148 ntBASIC0.85□□□□□ -2.27
LIMD1Q9UGP4 RNA5SP121-201ENST00000516537 101 ntBASIC0.85□□□□□ -2.27
LIMD1Q9UGP4 RNU6-175P-201ENST00000516896 107 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 198 ms