Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC011195.1-201ENST00000578177 177 ntBASIC1.13□□□□□ -2.23
CCDC39Q9UFE4 MIR7107-201ENST00000611489 80 ntBASIC1.13□□□□□ -2.23
CCDC39Q9UFE4 AC090617.8-201ENST00000623339 167 ntBASIC1.13□□□□□ -2.23
CCDC39Q9UFE4 U6.96-201ENST00000636425 70 ntBASIC1.13□□□□□ -2.23
CCDC39Q9UFE4 RNU6-753P-201ENST00000363926 107 ntBASIC1.12□□□□□ -2.23
CCDC39Q9UFE4 RNU4-38P-201ENST00000364472 129 ntBASIC1.12□□□□□ -2.23
CCDC39Q9UFE4 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
CCDC39Q9UFE4 SNORD99-201ENST00000408612 74 ntBASIC1.12□□□□□ -2.23
CCDC39Q9UFE4 RNA5SP255-201ENST00000516370 107 ntBASIC1.12□□□□□ -2.23
CCDC39Q9UFE4 SNORA70.25-201ENST00000612741 95 ntBASIC1.12□□□□□ -2.23
CCDC39Q9UFE4 RNU6-321P-201ENST00000410912 106 ntBASIC1.11□□□□□ -2.23
CCDC39Q9UFE4 RNA5SP247-201ENST00000411181 105 ntBASIC1.11□□□□□ -2.23
CCDC39Q9UFE4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.11□□□□□ -2.23
CCDC39Q9UFE4 RNA5SP94-201ENST00000516917 108 ntBASIC1.11□□□□□ -2.23
CCDC39Q9UFE4 AL021921.1-201ENST00000442774 93 ntBASIC1.1□□□□□ -2.23
CCDC39Q9UFE4 RNU6-518P-201ENST00000516056 96 ntBASIC1.1□□□□□ -2.23
CCDC39Q9UFE4 RNU6-980P-201ENST00000516925 103 ntBASIC1.1□□□□□ -2.23
CCDC39Q9UFE4 Y_RNA.74-201ENST00000362911 99 ntBASIC1.09□□□□□ -2.23
CCDC39Q9UFE4 RNU6-392P-201ENST00000364926 101 ntBASIC1.09□□□□□ -2.23
CCDC39Q9UFE4 SNORD116-16-201ENST00000384533 92 ntBASIC1.09□□□□□ -2.23
CCDC39Q9UFE4 MIR4752-201ENST00000579672 72 ntBASIC1.09□□□□□ -2.23
CCDC39Q9UFE4 AC243829.6-201ENST00000612652 106 ntBASIC1.09□□□□□ -2.23
CCDC39Q9UFE4 HMGN2P22-201ENST00000427588 175 ntBASIC1.08□□□□□ -2.24
CCDC39Q9UFE4 RNU4-45P-201ENST00000365469 141 ntBASIC1.07□□□□□ -2.24
CCDC39Q9UFE4 SNORD116.2-201ENST00000391251 93 ntBASIC1.07□□□□□ -2.24
CCDC39Q9UFE4 Y_RNA.282-201ENST00000364793 102 ntBASIC1.06□□□□□ -2.24
CCDC39Q9UFE4 MIR519A2-201ENST00000384990 87 ntBASIC1.06□□□□□ -2.24
CCDC39Q9UFE4 RNU6ATAC29P-201ENST00000408088 125 ntBASIC1.06□□□□□ -2.24
CCDC39Q9UFE4 MIR1255B2-201ENST00000408618 67 ntBASIC1.06□□□□□ -2.24
CCDC39Q9UFE4 RPL39P28-201ENST00000465655 155 ntBASIC1.06□□□□□ -2.24
CCDC39Q9UFE4 SNORA40.16-201ENST00000517238 121 ntBASIC1.06□□□□□ -2.24
CCDC39Q9UFE4 RNU1-29P-201ENST00000606574 126 ntBASIC1.06□□□□□ -2.24
CCDC39Q9UFE4 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC1.06□□□□□ -2.24
CCDC39Q9UFE4 AC243829.3-201ENST00000622177 108 ntBASIC1.06□□□□□ -2.24
CCDC39Q9UFE4 AC244090.1-201ENST00000441884 93 ntBASIC1.05□□□□□ -2.24
CCDC39Q9UFE4 MIR20A-201ENST00000362279 71 ntBASIC1.04□□□□□ -2.24
CCDC39Q9UFE4 Y_RNA.226-201ENST00000364337 114 ntBASIC1.04□□□□□ -2.24
CCDC39Q9UFE4 MIR527-201ENST00000385244 85 ntBASIC1.04□□□□□ -2.24
CCDC39Q9UFE4 RNU6-35P-201ENST00000384530 107 ntBASIC1.03□□□□□ -2.24
CCDC39Q9UFE4 MIR1287-201ENST00000408492 90 ntBASIC1.03□□□□□ -2.24
CCDC39Q9UFE4 RNA5SP222-201ENST00000411039 105 ntBASIC1.03□□□□□ -2.24
CCDC39Q9UFE4 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.03□□□□□ -2.24
CCDC39Q9UFE4 MIR7110-201ENST00000612638 86 ntBASIC1.03□□□□□ -2.24
CCDC39Q9UFE4 MIR8070-201ENST00000616510 88 ntBASIC1.03□□□□□ -2.24
CCDC39Q9UFE4 RNU4-33P-201ENST00000364316 85 ntBASIC1.02□□□□□ -2.25
CCDC39Q9UFE4 ACA64.5-201ENST00000516207 127 ntBASIC1.02□□□□□ -2.25
CCDC39Q9UFE4 MIR5706-201ENST00000579841 80 ntBASIC1.02□□□□□ -2.25
CCDC39Q9UFE4 MIR548AG1-201ENST00000579932 66 ntBASIC1.02□□□□□ -2.25
CCDC39Q9UFE4 MIR532-201ENST00000385025 91 ntBASIC1.01□□□□□ -2.25
CCDC39Q9UFE4 RNU6-337P-201ENST00000391243 106 ntBASIC1.01□□□□□ -2.25
CCDC39Q9UFE4 DLEU2_4.2-201ENST00000616613 58 ntBASIC1.01□□□□□ -2.25
CCDC39Q9UFE4 AC069271.1-201ENST00000445577 156 ntBASIC1□□□□□ -2.25
CCDC39Q9UFE4 AC211469.2-201ENST00000605461 205 ntBASIC1□□□□□ -2.25
CCDC39Q9UFE4 MIR6857-201ENST00000613267 93 ntBASIC1□□□□□ -2.25
CCDC39Q9UFE4 RNA5SP517-201ENST00000364724 117 ntBASIC0.99□□□□□ -2.25
CCDC39Q9UFE4 RNY1P8-201ENST00000383970 114 ntBASIC0.99□□□□□ -2.25
CCDC39Q9UFE4 SNORA40B-201ENST00000385573 128 ntBASIC0.99□□□□□ -2.25
CCDC39Q9UFE4 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
CCDC39Q9UFE4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
CCDC39Q9UFE4 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.99□□□□□ -2.25
CCDC39Q9UFE4 SNORD1B-201ENST00000363091 84 ntBASIC0.98□□□□□ -2.25
CCDC39Q9UFE4 SNORD114-2-201ENST00000363953 78 ntBASIC0.98□□□□□ -2.25
CCDC39Q9UFE4 RNU6-810P-201ENST00000364001 107 ntBASIC0.98□□□□□ -2.25
CCDC39Q9UFE4 RNU6-246P-201ENST00000384702 107 ntBASIC0.98□□□□□ -2.25
CCDC39Q9UFE4 MIR608-201ENST00000384820 100 ntBASIC0.98□□□□□ -2.25
CCDC39Q9UFE4 MIR499A-201ENST00000384903 122 ntBASIC0.98□□□□□ -2.25
CCDC39Q9UFE4 MIR146A-201ENST00000385201 99 ntBASIC0.98□□□□□ -2.25
CCDC39Q9UFE4 SNORD2-201ENST00000459163 69 ntBASIC0.98□□□□□ -2.25
CCDC39Q9UFE4 MIR548X-201ENST00000580069 75 ntBASIC0.98□□□□□ -2.25
CCDC39Q9UFE4 AL353765.1-201ENST00000605514 183 ntBASIC0.98□□□□□ -2.25
CCDC39Q9UFE4 MIR6773-201ENST00000612812 74 ntBASIC0.98□□□□□ -2.25
CCDC39Q9UFE4 SNORD115-25-201ENST00000362619 82 ntBASIC0.97□□□□□ -2.25
CCDC39Q9UFE4 SNORD114-29-201ENST00000364819 70 ntBASIC0.97□□□□□ -2.25
CCDC39Q9UFE4 SNORA49-201ENST00000386157 136 ntBASIC0.97□□□□□ -2.25
CCDC39Q9UFE4 RNU7-154P-201ENST00000516194 62 ntBASIC0.97□□□□□ -2.25
CCDC39Q9UFE4 Y_RNA.109-201ENST00000363215 102 ntBASIC0.96□□□□□ -2.26
CCDC39Q9UFE4 RNU6-930P-201ENST00000390938 100 ntBASIC0.96□□□□□ -2.26
CCDC39Q9UFE4 RNU6-172P-201ENST00000411000 93 ntBASIC0.96□□□□□ -2.26
CCDC39Q9UFE4 RNU7-188P-201ENST00000517063 64 ntBASIC0.96□□□□□ -2.26
CCDC39Q9UFE4 Y_RNA.224-201ENST00000364308 111 ntBASIC0.95□□□□□ -2.26
CCDC39Q9UFE4 SNORA36.2-201ENST00000384004 127 ntBASIC0.95□□□□□ -2.26
CCDC39Q9UFE4 RNU6-175P-201ENST00000516896 107 ntBASIC0.95□□□□□ -2.26
CCDC39Q9UFE4 SNORA25.18-201ENST00000607153 114 ntBASIC0.95□□□□□ -2.26
CCDC39Q9UFE4 SNORD114-27-201ENST00000363766 70 ntBASIC0.94□□□□□ -2.26
CCDC39Q9UFE4 PSMC1P5-201ENST00000512850 177 ntBASIC0.94□□□□□ -2.26
CCDC39Q9UFE4 RNU6-351P-201ENST00000516097 100 ntBASIC0.94□□□□□ -2.26
CCDC39Q9UFE4 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
CCDC39Q9UFE4 SNORA2A-201ENST00000383885 135 ntBASIC0.93□□□□□ -2.26
CCDC39Q9UFE4 MIRLET7B-201ENST00000385140 83 ntBASIC0.93□□□□□ -2.26
CCDC39Q9UFE4 RNU6-1232P-201ENST00000516299 86 ntBASIC0.93□□□□□ -2.26
CCDC39Q9UFE4 RNA5SP470-201ENST00000516463 106 ntBASIC0.93□□□□□ -2.26
CCDC39Q9UFE4 RNA5SP102-201ENST00000516865 106 ntBASIC0.93□□□□□ -2.26
CCDC39Q9UFE4 MIR4698-201ENST00000577795 80 ntBASIC0.93□□□□□ -2.26
CCDC39Q9UFE4 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.92□□□□□ -2.26
CCDC39Q9UFE4 MIR140-201ENST00000385282 100 ntBASIC0.92□□□□□ -2.26
CCDC39Q9UFE4 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.92□□□□□ -2.26
CCDC39Q9UFE4 MIR1276-201ENST00000408707 83 ntBASIC0.92□□□□□ -2.26
CCDC39Q9UFE4 RNU6-229P-201ENST00000516614 102 ntBASIC0.92□□□□□ -2.26
CCDC39Q9UFE4 U7.6-201ENST00000610841 64 ntBASIC0.92□□□□□ -2.26
CCDC39Q9UFE4 SNORD118-201ENST00000363593 134 ntBASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms