Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AL365222.1-201ENST00000614661 98 ntBASIC-0.8□□□□□ -2.54
VPS54Q9P1Q0 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.8□□□□□ -2.54
VPS54Q9P1Q0 RNU6-554P-201ENST00000410466 106 ntBASIC-0.81□□□□□ -2.54
VPS54Q9P1Q0 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.81□□□□□ -2.54
VPS54Q9P1Q0 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.81□□□□□ -2.54
VPS54Q9P1Q0 MIR6129-201ENST00000616087 109 ntBASIC-0.81□□□□□ -2.54
VPS54Q9P1Q0 Y_RNA.190-201ENST00000363964 101 ntBASIC-0.82□□□□□ -2.54
VPS54Q9P1Q0 RNU6-959P-201ENST00000384671 107 ntBASIC-0.82□□□□□ -2.54
VPS54Q9P1Q0 AP000533.3-201ENST00000447704 118 ntBASIC-0.82□□□□□ -2.54
VPS54Q9P1Q0 RNU7-153P-201ENST00000516455 62 ntBASIC-0.82□□□□□ -2.54
VPS54Q9P1Q0 RNU6-881P-201ENST00000516813 102 ntBASIC-0.82□□□□□ -2.54
VPS54Q9P1Q0 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.83□□□□□ -2.54
VPS54Q9P1Q0 RNU6-260P-201ENST00000384092 107 ntBASIC-0.83□□□□□ -2.54
VPS54Q9P1Q0 RNU6-746P-201ENST00000384112 109 ntBASIC-0.83□□□□□ -2.54
VPS54Q9P1Q0 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.83□□□□□ -2.54
VPS54Q9P1Q0 RNU6-106P-201ENST00000384405 107 ntBASIC-0.83□□□□□ -2.54
VPS54Q9P1Q0 Y_RNA.558-201ENST00000384685 113 ntBASIC-0.83□□□□□ -2.54
VPS54Q9P1Q0 MIR517B-201ENST00000385102 67 ntBASIC-0.83□□□□□ -2.54
VPS54Q9P1Q0 MIR1302-5-201ENST00000408164 150 ntBASIC-0.83□□□□□ -2.54
VPS54Q9P1Q0 Z95118.1-201ENST00000421372 247 ntBASIC-0.83□□□□□ -2.54
VPS54Q9P1Q0 MIR4796-201ENST00000580742 81 ntBASIC-0.83□□□□□ -2.54
VPS54Q9P1Q0 U7.3-201ENST00000616123 62 ntBASIC-0.83□□□□□ -2.54
VPS54Q9P1Q0 RNU6-35P-201ENST00000384530 107 ntBASIC-0.84□□□□□ -2.54
VPS54Q9P1Q0 MIR3668-201ENST00000582138 75 ntBASIC-0.84□□□□□ -2.54
VPS54Q9P1Q0 MIR4324-201ENST00000584846 72 ntBASIC-0.84□□□□□ -2.54
VPS54Q9P1Q0 AC006254.2-201ENST00000603259 279 ntBASIC-0.84□□□□□ -2.54
VPS54Q9P1Q0 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.84□□□□□ -2.54
VPS54Q9P1Q0 MIR6509-201ENST00000614603 85 ntBASIC-0.84□□□□□ -2.54
VPS54Q9P1Q0 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.85□□□□□ -2.55
VPS54Q9P1Q0 RNU5F-1-201ENST00000362507 117 ntBASIC-0.85□□□□□ -2.55
VPS54Q9P1Q0 Y_RNA.107-201ENST00000363190 121 ntBASIC-0.85□□□□□ -2.55
VPS54Q9P1Q0 SNORD116-10-201ENST00000363791 102 ntBASIC-0.85□□□□□ -2.55
VPS54Q9P1Q0 SNORA33.1-201ENST00000364957 130 ntBASIC-0.85□□□□□ -2.55
VPS54Q9P1Q0 AC022137.1-201ENST00000483735 151 ntBASIC-0.85□□□□□ -2.55
VPS54Q9P1Q0 RNA5SP470-201ENST00000516463 106 ntBASIC-0.85□□□□□ -2.55
VPS54Q9P1Q0 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.85□□□□□ -2.55
VPS54Q9P1Q0 MIR4499-201ENST00000584834 69 ntBASIC-0.85□□□□□ -2.55
VPS54Q9P1Q0 SNORD114-25-201ENST00000363742 72 ntBASIC-0.86□□□□□ -2.55
VPS54Q9P1Q0 SNORD115-27-201ENST00000364430 82 ntBASIC-0.86□□□□□ -2.55
VPS54Q9P1Q0 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.86□□□□□ -2.55
VPS54Q9P1Q0 MIR124-2-201ENST00000385081 109 ntBASIC-0.86□□□□□ -2.55
VPS54Q9P1Q0 MIR378F-201ENST00000578143 78 ntBASIC-0.86□□□□□ -2.55
VPS54Q9P1Q0 MIR3657-201ENST00000584818 117 ntBASIC-0.86□□□□□ -2.55
VPS54Q9P1Q0 RNU6-208P-201ENST00000362431 107 ntBASIC-0.87□□□□□ -2.55
VPS54Q9P1Q0 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.87□□□□□ -2.55
VPS54Q9P1Q0 MIR1265-201ENST00000408444 86 ntBASIC-0.87□□□□□ -2.55
VPS54Q9P1Q0 RNU6-1064P-201ENST00000410626 104 ntBASIC-0.87□□□□□ -2.55
VPS54Q9P1Q0 SNORA13-201ENST00000458790 133 ntBASIC-0.87□□□□□ -2.55
VPS54Q9P1Q0 YWHAEP3-201ENST00000582767 121 ntBASIC-0.87□□□□□ -2.55
VPS54Q9P1Q0 MIR6738-201ENST00000619620 64 ntBASIC-0.87□□□□□ -2.55
VPS54Q9P1Q0 SNORD95.1-201ENST00000364099 68 ntBASIC-0.88□□□□□ -2.55
VPS54Q9P1Q0 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.88□□□□□ -2.55
VPS54Q9P1Q0 AC008267.6-201ENST00000441664 139 ntBASIC-0.88□□□□□ -2.55
VPS54Q9P1Q0 AL691482.2-201ENST00000457453 84 ntBASIC-0.88□□□□□ -2.55
VPS54Q9P1Q0 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.89□□□□□ -2.55
VPS54Q9P1Q0 SNORD18.2-201ENST00000459604 70 ntBASIC-0.89□□□□□ -2.55
VPS54Q9P1Q0 MIR4464-201ENST00000580818 92 ntBASIC-0.89□□□□□ -2.55
VPS54Q9P1Q0 AL353803.5-201ENST00000599815 141 ntBASIC-0.89□□□□□ -2.55
VPS54Q9P1Q0 U6.81-201ENST00000612550 106 ntBASIC-0.89□□□□□ -2.55
VPS54Q9P1Q0 uc_338.19-201ENST00000616808 99 ntBASIC-0.89□□□□□ -2.55
VPS54Q9P1Q0 MIR1236-201ENST00000408340 102 ntBASIC-0.9□□□□□ -2.55
VPS54Q9P1Q0 MIR1255B2-201ENST00000408618 67 ntBASIC-0.9□□□□□ -2.55
VPS54Q9P1Q0 SNORA2.1-201ENST00000363089 137 ntBASIC-0.91□□□□□ -2.56
VPS54Q9P1Q0 Y_RNA.96-201ENST00000363092 109 ntBASIC-0.91□□□□□ -2.56
VPS54Q9P1Q0 Y_RNA.290-201ENST00000364879 114 ntBASIC-0.91□□□□□ -2.56
VPS54Q9P1Q0 RNU6-81P-201ENST00000365608 104 ntBASIC-0.91□□□□□ -2.56
VPS54Q9P1Q0 RNU6-24P-201ENST00000384440 107 ntBASIC-0.91□□□□□ -2.56
VPS54Q9P1Q0 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.91□□□□□ -2.56
VPS54Q9P1Q0 RNU6-274P-201ENST00000459566 107 ntBASIC-0.91□□□□□ -2.56
VPS54Q9P1Q0 MIR6888-201ENST00000621977 67 ntBASIC-0.91□□□□□ -2.56
VPS54Q9P1Q0 Y_RNA.93-201ENST00000363066 109 ntBASIC-0.92□□□□□ -2.56
VPS54Q9P1Q0 SNORD74.6-201ENST00000364796 70 ntBASIC-0.92□□□□□ -2.56
VPS54Q9P1Q0 RNU6-589P-201ENST00000516485 107 ntBASIC-0.92□□□□□ -2.56
VPS54Q9P1Q0 RNU6-1290P-201ENST00000362957 109 ntBASIC-0.93□□□□□ -2.56
VPS54Q9P1Q0 RNU6-10P-201ENST00000384036 107 ntBASIC-0.93□□□□□ -2.56
VPS54Q9P1Q0 SCARNA18B-201ENST00000458806 135 ntBASIC-0.93□□□□□ -2.56
VPS54Q9P1Q0 RNA5SP395-201ENST00000516567 118 ntBASIC-0.93□□□□□ -2.56
VPS54Q9P1Q0 CYP3A54P-201ENST00000566950 75 ntBASIC-0.93□□□□□ -2.56
VPS54Q9P1Q0 MIR3115-201ENST00000577915 68 ntBASIC-0.93□□□□□ -2.56
VPS54Q9P1Q0 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.94□□□□□ -2.56
VPS54Q9P1Q0 MIR548AX-201ENST00000580117 73 ntBASIC-0.94□□□□□ -2.56
VPS54Q9P1Q0 Y_RNA.818-201ENST00000618813 71 ntBASIC-0.94□□□□□ -2.56
VPS54Q9P1Q0 RNU6-766P-201ENST00000362478 107 ntBASIC-0.95□□□□□ -2.56
VPS54Q9P1Q0 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.95□□□□□ -2.56
VPS54Q9P1Q0 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.95□□□□□ -2.56
VPS54Q9P1Q0 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.95□□□□□ -2.56
VPS54Q9P1Q0 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-0.95□□□□□ -2.56
VPS54Q9P1Q0 AL445584.3-201ENST00000617173 78 ntBASIC-0.95□□□□□ -2.56
VPS54Q9P1Q0 MIR450A1-201ENST00000362262 91 ntBASIC-0.96□□□□□ -2.56
VPS54Q9P1Q0 SNORD114-17-201ENST00000364699 75 ntBASIC-0.96□□□□□ -2.56
VPS54Q9P1Q0 SNORA62.4-201ENST00000365504 151 ntBASIC-0.96□□□□□ -2.56
VPS54Q9P1Q0 RNU6-431P-201ENST00000383874 107 ntBASIC-0.96□□□□□ -2.56
VPS54Q9P1Q0 RNU6-30P-201ENST00000384561 107 ntBASIC-0.96□□□□□ -2.56
VPS54Q9P1Q0 AL450471.1-201ENST00000447509 127 ntBASIC-0.96□□□□□ -2.56
VPS54Q9P1Q0 MIR4306-201ENST00000583390 91 ntBASIC-0.96□□□□□ -2.56
VPS54Q9P1Q0 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-0.96□□□□□ -2.56
VPS54Q9P1Q0 RNU6-1056P-201ENST00000383996 107 ntBASIC-0.97□□□□□ -2.56
VPS54Q9P1Q0 RNU6-22P-201ENST00000384355 107 ntBASIC-0.97□□□□□ -2.56
VPS54Q9P1Q0 MIR587-201ENST00000384845 96 ntBASIC-0.97□□□□□ -2.56
VPS54Q9P1Q0 RNU6-1168P-201ENST00000390831 104 ntBASIC-0.97□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 267.4 ms