Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 RNU6-460P-201ENST00000391158 108 ntBASIC-2.88□□□□□ -2.87
USE1Q9NZ43 RNU6-519P-201ENST00000410590 108 ntBASIC-2.88□□□□□ -2.87
USE1Q9NZ43 AL021921.1-201ENST00000442774 93 ntBASIC-2.88□□□□□ -2.87
USE1Q9NZ43 AC103810.7-201ENST00000607821 91 ntBASIC-2.9□□□□□ -2.87
USE1Q9NZ43 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.9□□□□□ -2.87
USE1Q9NZ43 MIR496-201ENST00000385226 102 ntBASIC-2.91□□□□□ -2.88
USE1Q9NZ43 MTND5P20-201ENST00000448677 143 ntBASIC-2.91□□□□□ -2.88
USE1Q9NZ43 RNU6-781P-201ENST00000516377 101 ntBASIC-2.91□□□□□ -2.88
USE1Q9NZ43 MIR4439-201ENST00000583746 80 ntBASIC-2.91□□□□□ -2.88
USE1Q9NZ43 RNU6-1283P-201ENST00000365314 105 ntBASIC-2.92□□□□□ -2.88
USE1Q9NZ43 RNU6-841P-201ENST00000383872 107 ntBASIC-2.92□□□□□ -2.88
USE1Q9NZ43 Y_RNA.396-201ENST00000383949 103 ntBASIC-2.92□□□□□ -2.88
USE1Q9NZ43 Y_RNA.619-201ENST00000410951 90 ntBASIC-2.92□□□□□ -2.88
USE1Q9NZ43 MTND3P2-201ENST00000438452 342 ntBASIC-2.92□□□□□ -2.88
USE1Q9NZ43 MIR548AG1-201ENST00000579932 66 ntBASIC-2.92□□□□□ -2.88
USE1Q9NZ43 MIR3171-201ENST00000584270 74 ntBASIC-2.92□□□□□ -2.88
USE1Q9NZ43 MIR6739-201ENST00000622461 75 ntBASIC-2.92□□□□□ -2.88
USE1Q9NZ43 RNU4-11P-201ENST00000365287 132 ntBASIC-2.93□□□□□ -2.88
USE1Q9NZ43 SNORD58.1-201ENST00000391313 66 ntBASIC-2.93□□□□□ -2.88
USE1Q9NZ43 RNU7-197P-201ENST00000458836 62 ntBASIC-2.93□□□□□ -2.88
USE1Q9NZ43 Y_RNA.702-201ENST00000516843 96 ntBASIC-2.93□□□□□ -2.88
USE1Q9NZ43 RNY3P2-201ENST00000362918 102 ntBASIC-2.94□□□□□ -2.88
USE1Q9NZ43 RNU6-1020P-201ENST00000363684 107 ntBASIC-2.94□□□□□ -2.88
USE1Q9NZ43 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.94□□□□□ -2.88
USE1Q9NZ43 SNORA33.2-201ENST00000365413 134 ntBASIC-2.94□□□□□ -2.88
USE1Q9NZ43 Y_RNA.138-201ENST00000363462 102 ntBASIC-2.95□□□□□ -2.88
USE1Q9NZ43 Y_RNA.233-201ENST00000364407 101 ntBASIC-2.95□□□□□ -2.88
USE1Q9NZ43 RNU6-813P-201ENST00000384691 107 ntBASIC-2.95□□□□□ -2.88
USE1Q9NZ43 RNU6-118P-201ENST00000516552 102 ntBASIC-2.95□□□□□ -2.88
USE1Q9NZ43 MIR23C-201ENST00000579846 100 ntBASIC-2.95□□□□□ -2.88
USE1Q9NZ43 MIR3123-201ENST00000583417 75 ntBASIC-2.95□□□□□ -2.88
USE1Q9NZ43 MIR548AM-201ENST00000584298 74 ntBASIC-2.95□□□□□ -2.88
USE1Q9NZ43 DLEU2_3.2-201ENST00000612883 73 ntBASIC-2.95□□□□□ -2.88
USE1Q9NZ43 MTATP8P1-201ENST00000467115 207 ntBASIC-2.96□□□□□ -2.88
USE1Q9NZ43 RNU6-1153P-201ENST00000516760 105 ntBASIC-2.96□□□□□ -2.88
USE1Q9NZ43 MIR3613-201ENST00000579844 87 ntBASIC-2.96□□□□□ -2.88
USE1Q9NZ43 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.96□□□□□ -2.88
USE1Q9NZ43 Y_RNA.190-201ENST00000363964 101 ntBASIC-2.97□□□□□ -2.88
USE1Q9NZ43 SNORD45B-201ENST00000364617 72 ntBASIC-2.97□□□□□ -2.88
USE1Q9NZ43 Y_RNA.309-201ENST00000365046 111 ntBASIC-2.97□□□□□ -2.88
USE1Q9NZ43 RNU6-608P-201ENST00000383927 104 ntBASIC-2.97□□□□□ -2.88
USE1Q9NZ43 RNU6-980P-201ENST00000516925 103 ntBASIC-2.97□□□□□ -2.88
USE1Q9NZ43 Y_RNA.202-201ENST00000364083 110 ntBASIC-2.98□□□□□ -2.89
USE1Q9NZ43 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-2.98□□□□□ -2.89
USE1Q9NZ43 U6.81-201ENST00000612550 106 ntBASIC-2.98□□□□□ -2.89
USE1Q9NZ43 AL158147.1-201ENST00000443970 75 ntBASIC-2.99□□□□□ -2.89
USE1Q9NZ43 RNU4-71P-201ENST00000516258 113 ntBASIC-2.99□□□□□ -2.89
USE1Q9NZ43 AC022559.1-201ENST00000520905 205 ntBASIC-2.99□□□□□ -2.89
USE1Q9NZ43 Y_RNA.95-201ENST00000363079 95 ntBASIC-3□□□□□ -2.89
USE1Q9NZ43 RNU6-478P-201ENST00000363904 110 ntBASIC-3□□□□□ -2.89
USE1Q9NZ43 Y_RNA.574-201ENST00000384766 95 ntBASIC-3□□□□□ -2.89
USE1Q9NZ43 Y_RNA.20-201ENST00000362479 113 ntBASIC-3.01□□□□□ -2.89
USE1Q9NZ43 RNU6-639P-201ENST00000384074 107 ntBASIC-3.01□□□□□ -2.89
USE1Q9NZ43 Y_RNA.467-201ENST00000384297 102 ntBASIC-3.01□□□□□ -2.89
USE1Q9NZ43 AC025166.1-201ENST00000612411 163 ntBASIC-3.01□□□□□ -2.89
USE1Q9NZ43 AC020661.2-201ENST00000560114 134 ntBASIC-3.02□□□□□ -2.89
USE1Q9NZ43 Y_RNA.563-201ENST00000384707 108 ntBASIC-3.03□□□□□ -2.89
USE1Q9NZ43 Y_RNA.144-201ENST00000363521 113 ntBASIC-3.04□□□□□ -2.9
USE1Q9NZ43 RNU6-630P-201ENST00000391258 106 ntBASIC-3.04□□□□□ -2.9
USE1Q9NZ43 RNU4-88P-201ENST00000411220 86 ntBASIC-3.05□□□□□ -2.9
USE1Q9NZ43 SNORD54-201ENST00000459159 67 ntBASIC-3.05□□□□□ -2.9
USE1Q9NZ43 AC120024.2-201ENST00000576526 175 ntBASIC-3.05□□□□□ -2.9
USE1Q9NZ43 RNU4-40P-201ENST00000364351 143 ntBASIC-3.06□□□□□ -2.9
USE1Q9NZ43 Y_RNA.10-201ENST00000362371 110 ntBASIC-3.07□□□□□ -2.9
USE1Q9NZ43 Y_RNA.449-201ENST00000384187 102 ntBASIC-3.07□□□□□ -2.9
USE1Q9NZ43 Y_RNA.460-201ENST00000384255 102 ntBASIC-3.07□□□□□ -2.9
USE1Q9NZ43 Y_RNA.509-201ENST00000384506 99 ntBASIC-3.07□□□□□ -2.9
USE1Q9NZ43 RNU6-752P-201ENST00000516376 102 ntBASIC-3.07□□□□□ -2.9
USE1Q9NZ43 RNA5SP405-201ENST00000363059 114 ntBASIC-3.08□□□□□ -2.9
USE1Q9NZ43 RNY4P7-201ENST00000364600 96 ntBASIC-3.08□□□□□ -2.9
USE1Q9NZ43 RNU6-1152P-201ENST00000384576 107 ntBASIC-3.08□□□□□ -2.9
USE1Q9NZ43 RNU6-696P-201ENST00000390834 107 ntBASIC-3.08□□□□□ -2.9
USE1Q9NZ43 AP001340.1-201ENST00000624405 217 ntBASIC-3.08□□□□□ -2.9
USE1Q9NZ43 RNU6-194P-201ENST00000363862 105 ntBASIC-3.09□□□□□ -2.9
USE1Q9NZ43 Y_RNA.200-201ENST00000364018 102 ntBASIC-3.09□□□□□ -2.9
USE1Q9NZ43 AL118496.2-201ENST00000448300 230 ntBASIC-3.09□□□□□ -2.9
USE1Q9NZ43 RNU6-807P-201ENST00000516805 107 ntBASIC-3.09□□□□□ -2.9
USE1Q9NZ43 AL035470.1-201ENST00000622571 220 ntBASIC-3.09□□□□□ -2.9
USE1Q9NZ43 Y_RNA.211-201ENST00000364164 101 ntBASIC-3.1□□□□□ -2.91
USE1Q9NZ43 Y_RNA.236-201ENST00000364427 111 ntBASIC-3.1□□□□□ -2.91
USE1Q9NZ43 MIR520D-201ENST00000385002 87 ntBASIC-3.1□□□□□ -2.91
USE1Q9NZ43 RNU6-258P-201ENST00000390884 101 ntBASIC-3.1□□□□□ -2.91
USE1Q9NZ43 MIR513C-201ENST00000401352 84 ntBASIC-3.1□□□□□ -2.91
USE1Q9NZ43 RNU6-1061P-201ENST00000516530 99 ntBASIC-3.1□□□□□ -2.91
USE1Q9NZ43 AC141273.2-201ENST00000618989 130 ntBASIC-3.1□□□□□ -2.91
USE1Q9NZ43 RNU6-1034P-201ENST00000365335 101 ntBASIC-3.11□□□□□ -2.91
USE1Q9NZ43 Y_RNA.591-201ENST00000410228 104 ntBASIC-3.11□□□□□ -2.91
USE1Q9NZ43 Y_RNA.606-201ENST00000410579 103 ntBASIC-3.11□□□□□ -2.91
USE1Q9NZ43 RNU6-1135P-201ENST00000411083 103 ntBASIC-3.11□□□□□ -2.91
USE1Q9NZ43 Y_RNA.781-201ENST00000620301 103 ntBASIC-3.11□□□□□ -2.91
USE1Q9NZ43 RNU6-563P-201ENST00000364872 108 ntBASIC-3.12□□□□□ -2.91
USE1Q9NZ43 SNORD58C-201ENST00000365223 64 ntBASIC-3.12□□□□□ -2.91
USE1Q9NZ43 Y_RNA.403-201ENST00000383977 101 ntBASIC-3.12□□□□□ -2.91
USE1Q9NZ43 RNU6-1113P-201ENST00000384348 107 ntBASIC-3.12□□□□□ -2.91
USE1Q9NZ43 Y_RNA.478-201ENST00000384358 107 ntBASIC-3.12□□□□□ -2.91
USE1Q9NZ43 U2.7-201ENST00000619197 100 ntBASIC-3.12□□□□□ -2.91
USE1Q9NZ43 Y_RNA.29-201ENST00000362570 113 ntBASIC-3.13□□□□□ -2.91
USE1Q9NZ43 RNU6-458P-201ENST00000384179 107 ntBASIC-3.13□□□□□ -2.91
USE1Q9NZ43 RNU6-1262P-201ENST00000516217 96 ntBASIC-3.13□□□□□ -2.91
USE1Q9NZ43 MIR548S-201ENST00000581352 82 ntBASIC-3.13□□□□□ -2.91
Retrieved 100 of 98,524 protein–RNA pairs in 954.5 ms