Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RNU6-260P-201ENST00000384092 107 ntBASIC-1.27□□□□□ -2.61
VPS35Q96QK1 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.27□□□□□ -2.61
VPS35Q96QK1 RNA5SP266-201ENST00000410273 108 ntBASIC-1.27□□□□□ -2.61
VPS35Q96QK1 Y_RNA.712-201ENST00000517011 92 ntBASIC-1.27□□□□□ -2.61
VPS35Q96QK1 RNU6-824P-201ENST00000363724 104 ntBASIC-1.28□□□□□ -2.61
VPS35Q96QK1 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.28□□□□□ -2.61
VPS35Q96QK1 RNU6-746P-201ENST00000384112 109 ntBASIC-1.28□□□□□ -2.61
VPS35Q96QK1 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.28□□□□□ -2.61
VPS35Q96QK1 MIR548A3-201ENST00000385297 97 ntBASIC-1.28□□□□□ -2.61
VPS35Q96QK1 MIR1255B2-201ENST00000408618 67 ntBASIC-1.28□□□□□ -2.61
VPS35Q96QK1 RNU6-795P-201ENST00000516323 103 ntBASIC-1.28□□□□□ -2.61
VPS35Q96QK1 MIR4306-201ENST00000583390 91 ntBASIC-1.28□□□□□ -2.61
VPS35Q96QK1 U6.95-201ENST00000636931 70 ntBASIC-1.28□□□□□ -2.61
VPS35Q96QK1 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.29□□□□□ -2.62
VPS35Q96QK1 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.29□□□□□ -2.62
VPS35Q96QK1 MIR29B1-201ENST00000385015 81 ntBASIC-1.29□□□□□ -2.62
VPS35Q96QK1 MTATP6P29-201ENST00000415057 132 ntBASIC-1.29□□□□□ -2.62
VPS35Q96QK1 RNU7-134P-201ENST00000458997 64 ntBASIC-1.29□□□□□ -2.62
VPS35Q96QK1 RNA5SP147-201ENST00000516493 109 ntBASIC-1.29□□□□□ -2.62
VPS35Q96QK1 SNORA18.5-201ENST00000516616 101 ntBASIC-1.29□□□□□ -2.62
VPS35Q96QK1 AC006254.2-201ENST00000603259 279 ntBASIC-1.29□□□□□ -2.62
VPS35Q96QK1 SNORA2.1-201ENST00000363089 137 ntBASIC-1.3□□□□□ -2.62
VPS35Q96QK1 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.3□□□□□ -2.62
VPS35Q96QK1 RNU6-80P-201ENST00000384195 107 ntBASIC-1.3□□□□□ -2.62
VPS35Q96QK1 Y_RNA.464-201ENST00000384282 110 ntBASIC-1.3□□□□□ -2.62
VPS35Q96QK1 SNORD63.1-201ENST00000516178 80 ntBASIC-1.3□□□□□ -2.62
VPS35Q96QK1 RNU6-479P-201ENST00000516348 105 ntBASIC-1.3□□□□□ -2.62
VPS35Q96QK1 MIR3657-201ENST00000584818 117 ntBASIC-1.3□□□□□ -2.62
VPS35Q96QK1 AC012531.4-201ENST00000616509 177 ntBASIC-1.3□□□□□ -2.62
VPS35Q96QK1 RNU4-32P-201ENST00000363404 141 ntBASIC-1.31□□□□□ -2.62
VPS35Q96QK1 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.31□□□□□ -2.62
VPS35Q96QK1 MIR203A-201ENST00000384836 110 ntBASIC-1.31□□□□□ -2.62
VPS35Q96QK1 SNORA26.4-201ENST00000391188 123 ntBASIC-1.31□□□□□ -2.62
VPS35Q96QK1 RNU6-1212P-201ENST00000517023 104 ntBASIC-1.31□□□□□ -2.62
VPS35Q96QK1 CYP3A54P-201ENST00000566950 75 ntBASIC-1.31□□□□□ -2.62
VPS35Q96QK1 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.31□□□□□ -2.62
VPS35Q96QK1 RNU6-24P-201ENST00000384440 107 ntBASIC-1.32□□□□□ -2.62
VPS35Q96QK1 MIR548I1-201ENST00000408810 149 ntBASIC-1.32□□□□□ -2.62
VPS35Q96QK1 RNU6-346P-201ENST00000516288 111 ntBASIC-1.32□□□□□ -2.62
VPS35Q96QK1 RNU5F-1-201ENST00000362507 117 ntBASIC-1.33□□□□□ -2.62
VPS35Q96QK1 SNORD115-33-201ENST00000363723 82 ntBASIC-1.33□□□□□ -2.62
VPS35Q96QK1 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.33□□□□□ -2.62
VPS35Q96QK1 RNY1P5-201ENST00000383890 115 ntBASIC-1.33□□□□□ -2.62
VPS35Q96QK1 Y_RNA.586-201ENST00000391146 98 ntBASIC-1.33□□□□□ -2.62
VPS35Q96QK1 Y_RNA.705-201ENST00000516862 110 ntBASIC-1.33□□□□□ -2.62
VPS35Q96QK1 MIR6509-201ENST00000614603 85 ntBASIC-1.33□□□□□ -2.62
VPS35Q96QK1 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.33□□□□□ -2.62
VPS35Q96QK1 MIR6818-201ENST00000621576 65 ntBASIC-1.33□□□□□ -2.62
VPS35Q96QK1 MIR4773-1-201ENST00000637203 78 ntBASIC-1.33□□□□□ -2.62
VPS35Q96QK1 AC132825.6-201ENST00000638861 357 ntBASIC-1.33□□□□□ -2.62
VPS35Q96QK1 RNU6-924P-201ENST00000362926 108 ntBASIC-1.34□□□□□ -2.62
VPS35Q96QK1 Y_RNA.180-201ENST00000363867 113 ntBASIC-1.34□□□□□ -2.62
VPS35Q96QK1 SNORD115-22-201ENST00000364456 82 ntBASIC-1.34□□□□□ -2.62
VPS35Q96QK1 Y_RNA.281-201ENST00000364774 94 ntBASIC-1.34□□□□□ -2.62
VPS35Q96QK1 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.34□□□□□ -2.62
VPS35Q96QK1 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.35□□□□□ -2.63
VPS35Q96QK1 Y_RNA.506-201ENST00000384494 102 ntBASIC-1.35□□□□□ -2.63
VPS35Q96QK1 RNU7-154P-201ENST00000516194 62 ntBASIC-1.35□□□□□ -2.63
VPS35Q96QK1 U6.81-201ENST00000612550 106 ntBASIC-1.35□□□□□ -2.63
VPS35Q96QK1 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.35□□□□□ -2.63
VPS35Q96QK1 RNU6-972P-201ENST00000391208 107 ntBASIC-1.36□□□□□ -2.63
VPS35Q96QK1 RNU6-659P-201ENST00000516454 104 ntBASIC-1.36□□□□□ -2.63
VPS35Q96QK1 RNU6-255P-201ENST00000516957 105 ntBASIC-1.36□□□□□ -2.63
VPS35Q96QK1 AL627230.5-201ENST00000619807 58 ntBASIC-1.36□□□□□ -2.63
VPS35Q96QK1 RNU6-880P-201ENST00000384526 107 ntBASIC-1.37□□□□□ -2.63
VPS35Q96QK1 MIR521-2-201ENST00000384818 87 ntBASIC-1.37□□□□□ -2.63
VPS35Q96QK1 SCARNA23-201ENST00000516060 130 ntBASIC-1.37□□□□□ -2.63
VPS35Q96QK1 SNORD58A-201ENST00000383875 65 ntBASIC-1.38□□□□□ -2.63
VPS35Q96QK1 MIR519A2-201ENST00000384990 87 ntBASIC-1.38□□□□□ -2.63
VPS35Q96QK1 RNU6-887P-201ENST00000410660 100 ntBASIC-1.38□□□□□ -2.63
VPS35Q96QK1 RNU2-51P-201ENST00000410708 197 ntBASIC-1.38□□□□□ -2.63
VPS35Q96QK1 RNA5SP26-201ENST00000362406 119 ntBASIC-1.39□□□□□ -2.63
VPS35Q96QK1 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.39□□□□□ -2.63
VPS35Q96QK1 Y_RNA.96-201ENST00000363092 109 ntBASIC-1.39□□□□□ -2.63
VPS35Q96QK1 Y_RNA.218-201ENST00000364218 104 ntBASIC-1.39□□□□□ -2.63
VPS35Q96QK1 SNORA19.1-201ENST00000410656 129 ntBASIC-1.39□□□□□ -2.63
VPS35Q96QK1 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.39□□□□□ -2.63
VPS35Q96QK1 RNU6-412P-201ENST00000516434 106 ntBASIC-1.39□□□□□ -2.63
VPS35Q96QK1 MIR6739-201ENST00000622461 75 ntBASIC-1.39□□□□□ -2.63
VPS35Q96QK1 MIR4320-201ENST00000636981 65 ntBASIC-1.39□□□□□ -2.63
VPS35Q96QK1 RNU6-1107P-201ENST00000364817 104 ntBASIC-1.4□□□□□ -2.63
VPS35Q96QK1 RNA5SP331-201ENST00000364986 107 ntBASIC-1.4□□□□□ -2.63
VPS35Q96QK1 AL691482.2-201ENST00000457453 84 ntBASIC-1.4□□□□□ -2.63
VPS35Q96QK1 RNU6-904P-201ENST00000516206 101 ntBASIC-1.4□□□□□ -2.63
VPS35Q96QK1 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.4□□□□□ -2.63
VPS35Q96QK1 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.4□□□□□ -2.63
VPS35Q96QK1 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.41□□□□□ -2.64
VPS35Q96QK1 MIR548AG1-201ENST00000579932 66 ntBASIC-1.41□□□□□ -2.64
VPS35Q96QK1 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.42□□□□□ -2.64
VPS35Q96QK1 RNU6-907P-201ENST00000390924 102 ntBASIC-1.42□□□□□ -2.64
VPS35Q96QK1 SNX3P1X-201ENST00000414887 175 ntBASIC-1.42□□□□□ -2.64
VPS35Q96QK1 AC026421.1-201ENST00000519101 163 ntBASIC-1.42□□□□□ -2.64
VPS35Q96QK1 SNORD116-21-201ENST00000384507 92 ntBASIC-1.43□□□□□ -2.64
VPS35Q96QK1 MIR527-201ENST00000385244 85 ntBASIC-1.43□□□□□ -2.64
VPS35Q96QK1 MIR8485-201ENST00000401372 91 ntBASIC-1.43□□□□□ -2.64
VPS35Q96QK1 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.43□□□□□ -2.64
VPS35Q96QK1 SNORD116-10-201ENST00000363791 102 ntBASIC-1.44□□□□□ -2.64
VPS35Q96QK1 RNA5SP192-201ENST00000364404 120 ntBASIC-1.44□□□□□ -2.64
VPS35Q96QK1 RNU6-1113P-201ENST00000384348 107 ntBASIC-1.44□□□□□ -2.64
VPS35Q96QK1 AL353691.2-201ENST00000443795 59 ntBASIC-1.44□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 222.8 ms