Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SNORD116-22-201ENST00000384430 92 ntBASIC-0.17□□□□□ -2.44
ZNF540Q8NDQ6 RNU6-337P-201ENST00000391243 106 ntBASIC-0.17□□□□□ -2.44
ZNF540Q8NDQ6 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.17□□□□□ -2.44
ZNF540Q8NDQ6 SNORD115-25-201ENST00000362619 82 ntBASIC-0.18□□□□□ -2.44
ZNF540Q8NDQ6 SNORA18.1-201ENST00000363418 128 ntBASIC-0.18□□□□□ -2.44
ZNF540Q8NDQ6 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.18□□□□□ -2.44
ZNF540Q8NDQ6 SNORA63.6-201ENST00000364921 119 ntBASIC-0.18□□□□□ -2.44
ZNF540Q8NDQ6 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.18□□□□□ -2.44
ZNF540Q8NDQ6 SNORD4A-201ENST00000459174 72 ntBASIC-0.18□□□□□ -2.44
ZNF540Q8NDQ6 RNU7-55P-201ENST00000459426 62 ntBASIC-0.18□□□□□ -2.44
ZNF540Q8NDQ6 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.18□□□□□ -2.44
ZNF540Q8NDQ6 MIR1295B-201ENST00000636144 60 ntBASIC-0.18□□□□□ -2.44
ZNF540Q8NDQ6 MIR4773-1-201ENST00000637203 78 ntBASIC-0.18□□□□□ -2.44
ZNF540Q8NDQ6 Y_RNA.17-201ENST00000362433 111 ntBASIC-0.19□□□□□ -2.44
ZNF540Q8NDQ6 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.19□□□□□ -2.44
ZNF540Q8NDQ6 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.19□□□□□ -2.44
ZNF540Q8NDQ6 RNU6-455P-201ENST00000384681 107 ntBASIC-0.19□□□□□ -2.44
ZNF540Q8NDQ6 SNORD56B-201ENST00000384713 71 ntBASIC-0.19□□□□□ -2.44
ZNF540Q8NDQ6 AC093729.1-201ENST00000513074 128 ntBASIC-0.19□□□□□ -2.44
ZNF540Q8NDQ6 IGLVI-20-201ENST00000519296 130 ntBASIC-0.19□□□□□ -2.44
ZNF540Q8NDQ6 AP000676.1-201ENST00000533307 52 ntBASIC-0.19□□□□□ -2.44
ZNF540Q8NDQ6 AC090617.8-201ENST00000623339 167 ntBASIC-0.19□□□□□ -2.44
ZNF540Q8NDQ6 RNU6-208P-201ENST00000362431 107 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 RNU6-478P-201ENST00000363904 110 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 RNU6-340P-201ENST00000364005 107 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 SNORD114-12-201ENST00000365400 75 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 RNU6-35P-201ENST00000384530 107 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 MIR203A-201ENST00000384836 110 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 RNA5SP300-201ENST00000391197 107 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 RNU6-592P-201ENST00000411333 103 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 AL450471.1-201ENST00000447509 127 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 snoU13.13-201ENST00000458842 104 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 MIR3657-201ENST00000584818 117 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 AC006254.2-201ENST00000603259 279 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 MIR3666-201ENST00000607845 111 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 MIR6773-201ENST00000612812 74 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 AC006160.2-201ENST00000637708 154 ntBASIC-0.2□□□□□ -2.44
ZNF540Q8NDQ6 Y_RNA.73-201ENST00000362910 113 ntBASIC-0.21□□□□□ -2.44
ZNF540Q8NDQ6 RNU6-260P-201ENST00000384092 107 ntBASIC-0.21□□□□□ -2.44
ZNF540Q8NDQ6 RNU6-900P-201ENST00000384498 102 ntBASIC-0.21□□□□□ -2.44
ZNF540Q8NDQ6 SNORD77.2-201ENST00000391045 68 ntBASIC-0.21□□□□□ -2.44
ZNF540Q8NDQ6 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.21□□□□□ -2.44
ZNF540Q8NDQ6 RNU6-1298P-201ENST00000362456 101 ntBASIC-0.22□□□□□ -2.44
ZNF540Q8NDQ6 SNORD114-11-201ENST00000363738 75 ntBASIC-0.22□□□□□ -2.44
ZNF540Q8NDQ6 SNORD115-23-201ENST00000364461 82 ntBASIC-0.22□□□□□ -2.44
ZNF540Q8NDQ6 MIRLET7B-201ENST00000385140 83 ntBASIC-0.22□□□□□ -2.44
ZNF540Q8NDQ6 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.22□□□□□ -2.44
ZNF540Q8NDQ6 AC021146.9-201ENST00000512503 156 ntBASIC-0.22□□□□□ -2.44
ZNF540Q8NDQ6 RNU6-557P-201ENST00000516842 110 ntBASIC-0.22□□□□□ -2.44
ZNF540Q8NDQ6 snoMBII-202.2-201ENST00000517263 86 ntBASIC-0.22□□□□□ -2.44
ZNF540Q8NDQ6 MIR6509-201ENST00000614603 85 ntBASIC-0.22□□□□□ -2.44
ZNF540Q8NDQ6 SNORA2.1-201ENST00000363089 137 ntBASIC-0.23□□□□□ -2.45
ZNF540Q8NDQ6 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.23□□□□□ -2.45
ZNF540Q8NDQ6 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.23□□□□□ -2.45
ZNF540Q8NDQ6 Y_RNA.611-201ENST00000410682 108 ntBASIC-0.23□□□□□ -2.45
ZNF540Q8NDQ6 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.24□□□□□ -2.45
ZNF540Q8NDQ6 RNU6-979P-201ENST00000383896 107 ntBASIC-0.24□□□□□ -2.45
ZNF540Q8NDQ6 RNY4P30-201ENST00000410216 95 ntBASIC-0.24□□□□□ -2.45
ZNF540Q8NDQ6 SNORD2-201ENST00000459163 69 ntBASIC-0.24□□□□□ -2.45
ZNF540Q8NDQ6 RNA5SP147-201ENST00000516493 109 ntBASIC-0.24□□□□□ -2.45
ZNF540Q8NDQ6 MIR4280-201ENST00000582178 76 ntBASIC-0.24□□□□□ -2.45
ZNF540Q8NDQ6 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.25□□□□□ -2.45
ZNF540Q8NDQ6 RNU6-330P-201ENST00000363015 107 ntBASIC-0.25□□□□□ -2.45
ZNF540Q8NDQ6 SNORD114-31-201ENST00000363219 75 ntBASIC-0.25□□□□□ -2.45
ZNF540Q8NDQ6 SNORD115-37-201ENST00000363768 82 ntBASIC-0.25□□□□□ -2.45
ZNF540Q8NDQ6 SNORA33.1-201ENST00000364957 130 ntBASIC-0.25□□□□□ -2.45
ZNF540Q8NDQ6 RNU6-1134P-201ENST00000365156 101 ntBASIC-0.25□□□□□ -2.45
ZNF540Q8NDQ6 MIR214-201ENST00000385214 110 ntBASIC-0.25□□□□□ -2.45
ZNF540Q8NDQ6 AC096531.1-201ENST00000419107 107 ntBASIC-0.25□□□□□ -2.45
ZNF540Q8NDQ6 RNU6-274P-201ENST00000459566 107 ntBASIC-0.25□□□□□ -2.45
ZNF540Q8NDQ6 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-0.25□□□□□ -2.45
ZNF540Q8NDQ6 Y_RNA.694-201ENST00000516677 117 ntBASIC-0.25□□□□□ -2.45
ZNF540Q8NDQ6 MIR5589-201ENST00000579442 60 ntBASIC-0.25□□□□□ -2.45
ZNF540Q8NDQ6 MIR5588-201ENST00000581890 63 ntBASIC-0.25□□□□□ -2.45
ZNF540Q8NDQ6 YWHAEP3-201ENST00000582767 121 ntBASIC-0.25□□□□□ -2.45
ZNF540Q8NDQ6 MIR4788-201ENST00000639104 80 ntBASIC-0.25□□□□□ -2.45
ZNF540Q8NDQ6 RNU6-973P-201ENST00000364690 107 ntBASIC-0.26□□□□□ -2.45
ZNF540Q8NDQ6 AC074348.1-201ENST00000426503 132 ntBASIC-0.26□□□□□ -2.45
ZNF540Q8NDQ6 AL691482.2-201ENST00000457453 84 ntBASIC-0.26□□□□□ -2.45
ZNF540Q8NDQ6 RNU6-752P-201ENST00000516376 102 ntBASIC-0.26□□□□□ -2.45
ZNF540Q8NDQ6 MIR5582-201ENST00000579697 68 ntBASIC-0.26□□□□□ -2.45
ZNF540Q8NDQ6 MIR5704-201ENST00000584029 77 ntBASIC-0.26□□□□□ -2.45
ZNF540Q8NDQ6 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.27□□□□□ -2.45
ZNF540Q8NDQ6 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.27□□□□□ -2.45
ZNF540Q8NDQ6 AC114755.3-201ENST00000481111 251 ntBASIC-0.27□□□□□ -2.45
ZNF540Q8NDQ6 RNA5SP169-201ENST00000517268 117 ntBASIC-0.27□□□□□ -2.45
ZNF540Q8NDQ6 MIR8068-201ENST00000618032 68 ntBASIC-0.27□□□□□ -2.45
ZNF540Q8NDQ6 MIR6739-201ENST00000622461 75 ntBASIC-0.27□□□□□ -2.45
ZNF540Q8NDQ6 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.28□□□□□ -2.45
ZNF540Q8NDQ6 RNU6-686P-201ENST00000364839 107 ntBASIC-0.28□□□□□ -2.45
ZNF540Q8NDQ6 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.28□□□□□ -2.45
ZNF540Q8NDQ6 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.28□□□□□ -2.45
ZNF540Q8NDQ6 RNA5SP66-201ENST00000517178 101 ntBASIC-0.28□□□□□ -2.45
ZNF540Q8NDQ6 uc_338.36-201ENST00000622331 158 ntBASIC-0.28□□□□□ -2.45
ZNF540Q8NDQ6 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.29□□□□□ -2.46
ZNF540Q8NDQ6 Y_RNA.369-201ENST00000365568 117 ntBASIC-0.29□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 172.6 ms