Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MIR3657-201ENST00000584818 117 ntBASIC0.49□□□□□ -2.33
COL4A4P53420 U6.81-201ENST00000612550 106 ntBASIC0.49□□□□□ -2.33
COL4A4P53420 AC069503.3-201ENST00000618674 145 ntBASIC0.49□□□□□ -2.33
COL4A4P53420 uc_338.10-201ENST00000621872 182 ntBASIC0.49□□□□□ -2.33
COL4A4P53420 RNU6-499P-201ENST00000365615 107 ntBASIC0.48□□□□□ -2.33
COL4A4P53420 RNU6-1039P-201ENST00000383931 107 ntBASIC0.48□□□□□ -2.33
COL4A4P53420 SNORD116-24-201ENST00000384549 92 ntBASIC0.48□□□□□ -2.33
COL4A4P53420 AC244098.3-201ENST00000424803 96 ntBASIC0.48□□□□□ -2.33
COL4A4P53420 RNU6-469P-201ENST00000516253 101 ntBASIC0.48□□□□□ -2.33
COL4A4P53420 RNU6-881P-201ENST00000516813 102 ntBASIC0.48□□□□□ -2.33
COL4A4P53420 RNA5SP47-201ENST00000517230 109 ntBASIC0.48□□□□□ -2.33
COL4A4P53420 AC018659.1-201ENST00000551083 169 ntBASIC0.48□□□□□ -2.33
COL4A4P53420 NAMPTP3-201ENST00000569273 224 ntBASIC0.48□□□□□ -2.33
COL4A4P53420 MIR4511-201ENST00000582784 87 ntBASIC0.48□□□□□ -2.33
COL4A4P53420 AL136317.1-201ENST00000612653 226 ntBASIC0.48□□□□□ -2.33
COL4A4P53420 MIR4773-1-201ENST00000637203 78 ntBASIC0.48□□□□□ -2.33
COL4A4P53420 RNA5SP327-201ENST00000362494 101 ntBASIC0.47□□□□□ -2.33
COL4A4P53420 MIR9-2-201ENST00000384838 87 ntBASIC0.47□□□□□ -2.33
COL4A4P53420 SNORD42B-201ENST00000458893 67 ntBASIC0.47□□□□□ -2.33
COL4A4P53420 RNU5B-6P-201ENST00000516765 68 ntBASIC0.47□□□□□ -2.33
COL4A4P53420 MIR4661-201ENST00000582720 75 ntBASIC0.47□□□□□ -2.33
COL4A4P53420 RNU6-940P-201ENST00000363433 104 ntBASIC0.46□□□□□ -2.34
COL4A4P53420 SNORA25.5-201ENST00000363782 126 ntBASIC0.46□□□□□ -2.34
COL4A4P53420 Y_RNA.250-201ENST00000364542 110 ntBASIC0.46□□□□□ -2.34
COL4A4P53420 RNU1-141P-201ENST00000364623 158 ntBASIC0.46□□□□□ -2.34
COL4A4P53420 SNORD114-24-201ENST00000365029 72 ntBASIC0.46□□□□□ -2.34
COL4A4P53420 RNU6-982P-201ENST00000516216 102 ntBASIC0.46□□□□□ -2.34
COL4A4P53420 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.46□□□□□ -2.34
COL4A4P53420 RNU6-752P-201ENST00000516376 102 ntBASIC0.46□□□□□ -2.34
COL4A4P53420 MIR521-2-201ENST00000384818 87 ntBASIC0.46□□□□□ -2.34
COL4A4P53420 RNU6-269P-201ENST00000391077 97 ntBASIC0.46□□□□□ -2.34
COL4A4P53420 MIR548L-201ENST00000408303 86 ntBASIC0.46□□□□□ -2.34
COL4A4P53420 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.46□□□□□ -2.34
COL4A4P53420 SNORD124-201ENST00000459577 104 ntBASIC0.46□□□□□ -2.34
COL4A4P53420 RNU6-1089P-201ENST00000516473 104 ntBASIC0.46□□□□□ -2.34
COL4A4P53420 RNU6-656P-201ENST00000516785 107 ntBASIC0.46□□□□□ -2.34
COL4A4P53420 SNORA25.4-201ENST00000363666 124 ntBASIC0.45□□□□□ -2.34
COL4A4P53420 SNORD18A-201ENST00000363753 72 ntBASIC0.45□□□□□ -2.34
COL4A4P53420 RNU6-54P-201ENST00000365563 107 ntBASIC0.45□□□□□ -2.34
COL4A4P53420 SNORA8.2-201ENST00000384372 139 ntBASIC0.45□□□□□ -2.34
COL4A4P53420 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.45□□□□□ -2.34
COL4A4P53420 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.45□□□□□ -2.34
COL4A4P53420 U6.111-201ENST00000636093 83 ntBASIC0.45□□□□□ -2.34
COL4A4P53420 AC103706.3-201ENST00000636297 85 ntBASIC0.45□□□□□ -2.34
COL4A4P53420 MIR18A-201ENST00000362310 71 ntBASIC0.44□□□□□ -2.34
COL4A4P53420 RNU6-1216P-201ENST00000362590 107 ntBASIC0.44□□□□□ -2.34
COL4A4P53420 MIR573-201ENST00000384964 99 ntBASIC0.44□□□□□ -2.34
COL4A4P53420 MTND4LP1-201ENST00000446263 157 ntBASIC0.44□□□□□ -2.34
COL4A4P53420 RNU7-104P-201ENST00000459398 79 ntBASIC0.44□□□□□ -2.34
COL4A4P53420 AC011195.1-201ENST00000578177 177 ntBASIC0.44□□□□□ -2.34
COL4A4P53420 MIR3612-201ENST00000579753 87 ntBASIC0.44□□□□□ -2.34
COL4A4P53420 AC073869.9-201ENST00000641610 120 ntBASIC0.44□□□□□ -2.34
COL4A4P53420 RNU6-1335P-201ENST00000365426 107 ntBASIC0.43□□□□□ -2.34
COL4A4P53420 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
COL4A4P53420 RNU6-895P-201ENST00000384125 103 ntBASIC0.43□□□□□ -2.34
COL4A4P53420 RNU6-1162P-201ENST00000384443 104 ntBASIC0.43□□□□□ -2.34
COL4A4P53420 ACA64.5-201ENST00000516207 127 ntBASIC0.43□□□□□ -2.34
COL4A4P53420 CYP3A54P-201ENST00000566950 75 ntBASIC0.43□□□□□ -2.34
COL4A4P53420 MIR6828-201ENST00000636181 60 ntBASIC0.43□□□□□ -2.34
COL4A4P53420 SNORA36.1-201ENST00000363424 132 ntBASIC0.43□□□□□ -2.34
COL4A4P53420 Y_RNA.375-201ENST00000365625 101 ntBASIC0.43□□□□□ -2.34
COL4A4P53420 SNORA15B-2-201ENST00000384058 135 ntBASIC0.43□□□□□ -2.34
COL4A4P53420 SNORA15B-1-201ENST00000384334 135 ntBASIC0.43□□□□□ -2.34
COL4A4P53420 MIR608-201ENST00000384820 100 ntBASIC0.43□□□□□ -2.34
COL4A4P53420 MIR518A1-201ENST00000385068 85 ntBASIC0.43□□□□□ -2.34
COL4A4P53420 snoU13.13-201ENST00000458842 104 ntBASIC0.43□□□□□ -2.34
COL4A4P53420 IGLVI-20-201ENST00000519296 130 ntBASIC0.43□□□□□ -2.34
COL4A4P53420 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.42□□□□□ -2.34
COL4A4P53420 SNORD95.1-201ENST00000364099 68 ntBASIC0.42□□□□□ -2.34
COL4A4P53420 RNA5SP192-201ENST00000364404 120 ntBASIC0.42□□□□□ -2.34
COL4A4P53420 RNA5SP147-201ENST00000516493 109 ntBASIC0.42□□□□□ -2.34
COL4A4P53420 MIR4460-201ENST00000577862 86 ntBASIC0.42□□□□□ -2.34
COL4A4P53420 MIR5190-201ENST00000581537 80 ntBASIC0.42□□□□□ -2.34
COL4A4P53420 AC092634.7-201ENST00000621022 103 ntBASIC0.42□□□□□ -2.34
COL4A4P53420 Y_RNA.443-201ENST00000384135 111 ntBASIC0.41□□□□□ -2.34
COL4A4P53420 MIR630-201ENST00000384957 97 ntBASIC0.41□□□□□ -2.34
COL4A4P53420 MTND4LP19-201ENST00000403051 166 ntBASIC0.41□□□□□ -2.34
COL4A4P53420 SNORD110-201ENST00000408189 75 ntBASIC0.41□□□□□ -2.34
COL4A4P53420 RNU4-37P-201ENST00000410214 84 ntBASIC0.41□□□□□ -2.34
COL4A4P53420 MIR1468-201ENST00000410600 86 ntBASIC0.41□□□□□ -2.34
COL4A4P53420 AL157398.1-201ENST00000452981 186 ntBASIC0.41□□□□□ -2.34
COL4A4P53420 Y_RNA.633-201ENST00000459107 95 ntBASIC0.41□□□□□ -2.34
COL4A4P53420 MIR20A-201ENST00000362279 71 ntBASIC0.4□□□□□ -2.34
COL4A4P53420 Y_RNA.32-201ENST00000362589 110 ntBASIC0.4□□□□□ -2.34
COL4A4P53420 RNU6-668P-201ENST00000364180 107 ntBASIC0.4□□□□□ -2.34
COL4A4P53420 RNU6-987P-201ENST00000384759 104 ntBASIC0.4□□□□□ -2.34
COL4A4P53420 SCARNA17.3-201ENST00000516381 125 ntBASIC0.4□□□□□ -2.34
COL4A4P53420 SNORA40.17-201ENST00000517256 115 ntBASIC0.4□□□□□ -2.34
COL4A4P53420 AC108676.2-201ENST00000605225 163 ntBASIC0.4□□□□□ -2.34
COL4A4P53420 RNU6-614P-201ENST00000384369 107 ntBASIC0.4□□□□□ -2.35
COL4A4P53420 SNORD2-201ENST00000459163 69 ntBASIC0.4□□□□□ -2.35
COL4A4P53420 SCARNA16.5-201ENST00000517114 183 ntBASIC0.4□□□□□ -2.35
COL4A4P53420 MIR5706-201ENST00000579841 80 ntBASIC0.4□□□□□ -2.35
COL4A4P53420 MIR3938-201ENST00000582157 103 ntBASIC0.4□□□□□ -2.35
COL4A4P53420 U6.59-201ENST00000615686 107 ntBASIC0.4□□□□□ -2.35
COL4A4P53420 SNORA2.1-201ENST00000363089 137 ntBASIC0.39□□□□□ -2.35
COL4A4P53420 SNORA50A-201ENST00000384225 134 ntBASIC0.39□□□□□ -2.35
COL4A4P53420 Y_RNA.457-201ENST00000384237 111 ntBASIC0.39□□□□□ -2.35
COL4A4P53420 MIR652-201ENST00000385278 98 ntBASIC0.39□□□□□ -2.35
COL4A4P53420 AC069271.1-201ENST00000445577 156 ntBASIC0.39□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 225 ms