Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 MIR4668-201ENST00000582284 70 ntBASIC-0.54□□□□□ -2.5
MSH2P43246 MIR8064-201ENST00000612863 90 ntBASIC-0.54□□□□□ -2.5
MSH2P43246 SNORD114-11-201ENST00000363738 75 ntBASIC-0.55□□□□□ -2.5
MSH2P43246 SNORD14C-201ENST00000365382 88 ntBASIC-0.55□□□□□ -2.5
MSH2P43246 RNU6-147P-201ENST00000383983 107 ntBASIC-0.55□□□□□ -2.5
MSH2P43246 RNU6-901P-201ENST00000384593 106 ntBASIC-0.55□□□□□ -2.5
MSH2P43246 AL035461.1-201ENST00000421490 332 ntBASIC-0.55□□□□□ -2.5
MSH2P43246 U6.81-201ENST00000612550 106 ntBASIC-0.55□□□□□ -2.5
MSH2P43246 U2.22-201ENST00000636441 106 ntBASIC-0.55□□□□□ -2.5
MSH2P43246 RNU6-633P-201ENST00000362612 103 ntBASIC-0.56□□□□□ -2.5
MSH2P43246 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.56□□□□□ -2.5
MSH2P43246 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.56□□□□□ -2.5
MSH2P43246 SNORD56B-201ENST00000384713 71 ntBASIC-0.56□□□□□ -2.5
MSH2P43246 MIR4636-201ENST00000582271 80 ntBASIC-0.56□□□□□ -2.5
MSH2P43246 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-0.57□□□□□ -2.5
MSH2P43246 AC021146.9-201ENST00000512503 156 ntBASIC-0.57□□□□□ -2.5
MSH2P43246 MIR6773-201ENST00000612812 74 ntBASIC-0.57□□□□□ -2.5
MSH2P43246 RNU6-260P-201ENST00000384092 107 ntBASIC-0.58□□□□□ -2.5
MSH2P43246 AL450471.1-201ENST00000447509 127 ntBASIC-0.58□□□□□ -2.5
MSH2P43246 SNORD126-201ENST00000459475 77 ntBASIC-0.58□□□□□ -2.5
MSH2P43246 RNU6-274P-201ENST00000459566 107 ntBASIC-0.58□□□□□ -2.5
MSH2P43246 AC093726.3-201ENST00000637588 150 ntBASIC-0.58□□□□□ -2.5
MSH2P43246 RNU6-973P-201ENST00000364690 107 ntBASIC-0.59□□□□□ -2.5
MSH2P43246 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.59□□□□□ -2.5
MSH2P43246 SNORD116-22-201ENST00000384430 92 ntBASIC-0.59□□□□□ -2.5
MSH2P43246 Y_RNA.620-201ENST00000411009 88 ntBASIC-0.59□□□□□ -2.5
MSH2P43246 AL445193.1-201ENST00000441183 141 ntBASIC-0.59□□□□□ -2.5
MSH2P43246 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.59□□□□□ -2.5
MSH2P43246 MIR4493-201ENST00000584016 73 ntBASIC-0.59□□□□□ -2.5
MSH2P43246 MIR6509-201ENST00000614603 85 ntBASIC-0.59□□□□□ -2.5
MSH2P43246 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.59□□□□□ -2.5
MSH2P43246 MIR101-1-201ENST00000362265 75 ntBASIC-0.6□□□□□ -2.51
MSH2P43246 RNU6-640P-201ENST00000363693 105 ntBASIC-0.6□□□□□ -2.51
MSH2P43246 SNORD115-37-201ENST00000363768 82 ntBASIC-0.6□□□□□ -2.51
MSH2P43246 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.6□□□□□ -2.51
MSH2P43246 RNU6-592P-201ENST00000411333 103 ntBASIC-0.6□□□□□ -2.51
MSH2P43246 AL691482.2-201ENST00000457453 84 ntBASIC-0.6□□□□□ -2.51
MSH2P43246 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.6□□□□□ -2.51
MSH2P43246 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.6□□□□□ -2.51
MSH2P43246 MIR4280-201ENST00000582178 76 ntBASIC-0.6□□□□□ -2.51
MSH2P43246 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.61□□□□□ -2.51
MSH2P43246 RNU6-44P-201ENST00000384045 107 ntBASIC-0.61□□□□□ -2.51
MSH2P43246 RNU6-905P-201ENST00000384434 107 ntBASIC-0.61□□□□□ -2.51
MSH2P43246 RNU6-337P-201ENST00000391243 106 ntBASIC-0.61□□□□□ -2.51
MSH2P43246 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.61□□□□□ -2.51
MSH2P43246 uc_338.36-201ENST00000622331 158 ntBASIC-0.61□□□□□ -2.51
MSH2P43246 RNU6-208P-201ENST00000362431 107 ntBASIC-0.62□□□□□ -2.51
MSH2P43246 MIR488-201ENST00000365739 83 ntBASIC-0.62□□□□□ -2.51
MSH2P43246 MIR203A-201ENST00000384836 110 ntBASIC-0.62□□□□□ -2.51
MSH2P43246 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.62□□□□□ -2.51
MSH2P43246 AL391099.1-201ENST00000624635 187 ntBASIC-0.62□□□□□ -2.51
MSH2P43246 RNU6-219P-201ENST00000364728 107 ntBASIC-0.63□□□□□ -2.51
MSH2P43246 MIRLET7B-201ENST00000385140 83 ntBASIC-0.63□□□□□ -2.51
MSH2P43246 SNORD77.2-201ENST00000391045 68 ntBASIC-0.63□□□□□ -2.51
MSH2P43246 MIR4432-201ENST00000581823 84 ntBASIC-0.63□□□□□ -2.51
MSH2P43246 MIR3657-201ENST00000584818 117 ntBASIC-0.63□□□□□ -2.51
MSH2P43246 U6.96-201ENST00000636425 70 ntBASIC-0.63□□□□□ -2.51
MSH2P43246 SNORA2.1-201ENST00000363089 137 ntBASIC-0.64□□□□□ -2.51
MSH2P43246 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.64□□□□□ -2.51
MSH2P43246 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.64□□□□□ -2.51
MSH2P43246 MIR196A2-201ENST00000385189 110 ntBASIC-0.64□□□□□ -2.51
MSH2P43246 RNA5SP451-201ENST00000410588 110 ntBASIC-0.64□□□□□ -2.51
MSH2P43246 RNU6-402P-201ENST00000410678 103 ntBASIC-0.64□□□□□ -2.51
MSH2P43246 AC093729.1-201ENST00000513074 128 ntBASIC-0.64□□□□□ -2.51
MSH2P43246 MIR548AZ-201ENST00000616567 95 ntBASIC-0.64□□□□□ -2.51
MSH2P43246 RNU6-35P-201ENST00000384530 107 ntBASIC-0.65□□□□□ -2.51
MSH2P43246 SNORA32.3-201ENST00000384772 121 ntBASIC-0.65□□□□□ -2.51
MSH2P43246 AC114755.3-201ENST00000481111 251 ntBASIC-0.65□□□□□ -2.51
MSH2P43246 RNA5SP147-201ENST00000516493 109 ntBASIC-0.65□□□□□ -2.51
MSH2P43246 MIR6851-201ENST00000617060 67 ntBASIC-0.65□□□□□ -2.51
MSH2P43246 RNU6-340P-201ENST00000364005 107 ntBASIC-0.66□□□□□ -2.52
MSH2P43246 MIR604-201ENST00000384880 94 ntBASIC-0.66□□□□□ -2.52
MSH2P43246 RNU6-284P-201ENST00000411105 106 ntBASIC-0.66□□□□□ -2.52
MSH2P43246 RNU6-752P-201ENST00000516376 102 ntBASIC-0.66□□□□□ -2.52
MSH2P43246 snoR1.1-201ENST00000628177 80 ntBASIC-0.66□□□□□ -2.52
MSH2P43246 RNU6-681P-201ENST00000364012 104 ntBASIC-0.67□□□□□ -2.52
MSH2P43246 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.67□□□□□ -2.52
MSH2P43246 RNU6-497P-201ENST00000365316 104 ntBASIC-0.67□□□□□ -2.52
MSH2P43246 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.67□□□□□ -2.52
MSH2P43246 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.67□□□□□ -2.52
MSH2P43246 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.67□□□□□ -2.52
MSH2P43246 RNU6-267P-201ENST00000516714 103 ntBASIC-0.67□□□□□ -2.52
MSH2P43246 RNU6-624P-201ENST00000363411 107 ntBASIC-0.68□□□□□ -2.52
MSH2P43246 SNORD115-23-201ENST00000364461 82 ntBASIC-0.68□□□□□ -2.52
MSH2P43246 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.68□□□□□ -2.52
MSH2P43246 Z95118.1-201ENST00000421372 247 ntBASIC-0.68□□□□□ -2.52
MSH2P43246 RNU6-758P-201ENST00000516292 89 ntBASIC-0.68□□□□□ -2.52
MSH2P43246 SNORD38.3-201ENST00000516599 73 ntBASIC-0.68□□□□□ -2.52
MSH2P43246 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.68□□□□□ -2.52
MSH2P43246 RNY1P7-201ENST00000384743 110 ntBASIC-0.69□□□□□ -2.52
MSH2P43246 MIR204-201ENST00000385200 110 ntBASIC-0.69□□□□□ -2.52
MSH2P43246 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.69□□□□□ -2.52
MSH2P43246 RNA5SP169-201ENST00000517268 117 ntBASIC-0.69□□□□□ -2.52
MSH2P43246 AC140658.3-201ENST00000567603 271 ntBASIC-0.69□□□□□ -2.52
MSH2P43246 YWHAEP3-201ENST00000582767 121 ntBASIC-0.69□□□□□ -2.52
MSH2P43246 MIR5704-201ENST00000584029 77 ntBASIC-0.69□□□□□ -2.52
MSH2P43246 MIR548BB-201ENST00000626714 66 ntBASIC-0.69□□□□□ -2.52
MSH2P43246 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.7□□□□□ -2.52
MSH2P43246 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.7□□□□□ -2.52
MSH2P43246 MIR1265-201ENST00000408444 86 ntBASIC-0.7□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 170.5 ms