Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC090617.8-201ENST00000623339 167 ntBASIC1.42□□□□□ -2.18
COL8A1P27658 Y_RNA.30-201ENST00000362572 97 ntBASIC1.41□□□□□ -2.18
COL8A1P27658 MIR598-201ENST00000384868 97 ntBASIC1.41□□□□□ -2.18
COL8A1P27658 RNU6-1250P-201ENST00000391218 107 ntBASIC1.41□□□□□ -2.18
COL8A1P27658 MIR1255B2-201ENST00000408618 67 ntBASIC1.41□□□□□ -2.18
COL8A1P27658 RPS29P1-201ENST00000465274 159 ntBASIC1.41□□□□□ -2.18
COL8A1P27658 MIR4490-201ENST00000582647 84 ntBASIC1.41□□□□□ -2.18
COL8A1P27658 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.41□□□□□ -2.18
COL8A1P27658 MIR520E-201ENST00000384867 87 ntBASIC1.4□□□□□ -2.19
COL8A1P27658 MIR573-201ENST00000384964 99 ntBASIC1.4□□□□□ -2.19
COL8A1P27658 MIR1323-201ENST00000408090 73 ntBASIC1.4□□□□□ -2.19
COL8A1P27658 SNORD110-201ENST00000408189 75 ntBASIC1.4□□□□□ -2.19
COL8A1P27658 FABP5P4-201ENST00000437203 171 ntBASIC1.4□□□□□ -2.19
COL8A1P27658 MIR3612-201ENST00000579753 87 ntBASIC1.4□□□□□ -2.19
COL8A1P27658 AL353770.2-201ENST00000620024 78 ntBASIC1.4□□□□□ -2.19
COL8A1P27658 MIR429-201ENST00000362106 83 ntBASIC1.39□□□□□ -2.19
COL8A1P27658 SNORD114-27-201ENST00000363766 70 ntBASIC1.39□□□□□ -2.19
COL8A1P27658 MIR222-201ENST00000384992 110 ntBASIC1.39□□□□□ -2.19
COL8A1P27658 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
COL8A1P27658 RNA5SP436-201ENST00000516020 115 ntBASIC1.38□□□□□ -2.19
COL8A1P27658 RNA5SP227-201ENST00000516184 113 ntBASIC1.38□□□□□ -2.19
COL8A1P27658 RNU7-154P-201ENST00000516194 62 ntBASIC1.38□□□□□ -2.19
COL8A1P27658 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.38□□□□□ -2.19
COL8A1P27658 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.38□□□□□ -2.19
COL8A1P27658 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
COL8A1P27658 Y_RNA.109-201ENST00000363215 102 ntBASIC1.36□□□□□ -2.19
COL8A1P27658 AC244090.1-201ENST00000441884 93 ntBASIC1.36□□□□□ -2.19
COL8A1P27658 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.36□□□□□ -2.19
COL8A1P27658 Y_RNA.178-201ENST00000363832 102 ntBASIC1.35□□□□□ -2.19
COL8A1P27658 RNU6-997P-201ENST00000384725 107 ntBASIC1.35□□□□□ -2.19
COL8A1P27658 SNORD2-201ENST00000459163 69 ntBASIC1.35□□□□□ -2.19
COL8A1P27658 MIR6078-201ENST00000611069 100 ntBASIC1.35□□□□□ -2.19
COL8A1P27658 MIR20A-201ENST00000362279 71 ntBASIC1.34□□□□□ -2.19
COL8A1P27658 RNU1-93P-201ENST00000364704 169 ntBASIC1.34□□□□□ -2.19
COL8A1P27658 SNORA25-201ENST00000384384 134 ntBASIC1.34□□□□□ -2.19
COL8A1P27658 RNU6ATAC14P-201ENST00000516218 91 ntBASIC1.34□□□□□ -2.19
COL8A1P27658 RNU7-160P-201ENST00000516660 62 ntBASIC1.34□□□□□ -2.19
COL8A1P27658 RNU6-1223P-201ENST00000517124 104 ntBASIC1.34□□□□□ -2.19
COL8A1P27658 MIR548AG1-201ENST00000579932 66 ntBASIC1.34□□□□□ -2.19
COL8A1P27658 SNORD48-201ENST00000364953 64 ntBASIC1.33□□□□□ -2.2
COL8A1P27658 RNU6-696P-201ENST00000390834 107 ntBASIC1.33□□□□□ -2.2
COL8A1P27658 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
COL8A1P27658 SNORD115-25-201ENST00000362619 82 ntBASIC1.32□□□□□ -2.2
COL8A1P27658 RNU6-924P-201ENST00000362926 108 ntBASIC1.32□□□□□ -2.2
COL8A1P27658 RNA5SP363-201ENST00000365072 115 ntBASIC1.32□□□□□ -2.2
COL8A1P27658 RNU6-724P-201ENST00000390958 105 ntBASIC1.32□□□□□ -2.2
COL8A1P27658 RNA5SP470-201ENST00000516463 106 ntBASIC1.32□□□□□ -2.2
COL8A1P27658 RNA5SP268-201ENST00000516828 124 ntBASIC1.32□□□□□ -2.2
COL8A1P27658 SNORA31.24-201ENST00000517232 57 ntBASIC1.32□□□□□ -2.2
COL8A1P27658 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.32□□□□□ -2.2
COL8A1P27658 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.31□□□□□ -2.2
COL8A1P27658 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
COL8A1P27658 SNORA36.1-201ENST00000363424 132 ntBASIC1.31□□□□□ -2.2
COL8A1P27658 RNU6-458P-201ENST00000384179 107 ntBASIC1.31□□□□□ -2.2
COL8A1P27658 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
COL8A1P27658 MIR548J-201ENST00000408833 112 ntBASIC1.31□□□□□ -2.2
COL8A1P27658 AL354695.1-201ENST00000427935 228 ntBASIC1.31□□□□□ -2.2
COL8A1P27658 RNU6-1206P-201ENST00000516339 103 ntBASIC1.31□□□□□ -2.2
COL8A1P27658 MIR548AL-201ENST00000578416 97 ntBASIC1.31□□□□□ -2.2
COL8A1P27658 AC025627.3-201ENST00000582078 182 ntBASIC1.31□□□□□ -2.2
COL8A1P27658 U6.58-201ENST00000613107 107 ntBASIC1.31□□□□□ -2.2
COL8A1P27658 RNU6-337P-201ENST00000391243 106 ntBASIC1.3□□□□□ -2.2
COL8A1P27658 MIR151B-201ENST00000584249 96 ntBASIC1.3□□□□□ -2.2
COL8A1P27658 MIR6788-201ENST00000618842 66 ntBASIC1.3□□□□□ -2.2
COL8A1P27658 MIR19B1-201ENST00000384829 87 ntBASIC1.29□□□□□ -2.2
COL8A1P27658 MIR200A-201ENST00000384875 90 ntBASIC1.29□□□□□ -2.2
COL8A1P27658 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.29□□□□□ -2.2
COL8A1P27658 MIR6773-201ENST00000612812 74 ntBASIC1.29□□□□□ -2.2
COL8A1P27658 RNU6-986P-201ENST00000363133 102 ntBASIC1.28□□□□□ -2.2
COL8A1P27658 RNU4-45P-201ENST00000365469 141 ntBASIC1.28□□□□□ -2.2
COL8A1P27658 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.28□□□□□ -2.2
COL8A1P27658 HMGN2P22-201ENST00000427588 175 ntBASIC1.28□□□□□ -2.2
COL8A1P27658 MIR7107-201ENST00000611489 80 ntBASIC1.28□□□□□ -2.2
COL8A1P27658 SNORA70.25-201ENST00000612741 95 ntBASIC1.28□□□□□ -2.2
COL8A1P27658 MIR18A-201ENST00000362310 71 ntBASIC1.27□□□□□ -2.21
COL8A1P27658 Y_RNA.69-201ENST00000362885 109 ntBASIC1.27□□□□□ -2.21
COL8A1P27658 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
COL8A1P27658 RNA5SP327-201ENST00000362494 101 ntBASIC1.26□□□□□ -2.21
COL8A1P27658 MIR579-201ENST00000385221 98 ntBASIC1.26□□□□□ -2.21
COL8A1P27658 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.26□□□□□ -2.21
COL8A1P27658 MIR1304-201ENST00000408243 91 ntBASIC1.26□□□□□ -2.21
COL8A1P27658 MIR5706-201ENST00000579841 80 ntBASIC1.26□□□□□ -2.21
COL8A1P27658 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.26□□□□□ -2.21
COL8A1P27658 RNU7-151P-201ENST00000516930 53 ntBASIC1.25□□□□□ -2.21
COL8A1P27658 SNORD114-29-201ENST00000364819 70 ntBASIC1.24□□□□□ -2.21
COL8A1P27658 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
COL8A1P27658 RNA5SP94-201ENST00000516917 108 ntBASIC1.24□□□□□ -2.21
COL8A1P27658 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC1.24□□□□□ -2.21
COL8A1P27658 RNU6-598P-201ENST00000364017 105 ntBASIC1.23□□□□□ -2.21
COL8A1P27658 MIR329-2-201ENST00000385029 84 ntBASIC1.23□□□□□ -2.21
COL8A1P27658 MIRLET7B-201ENST00000385140 83 ntBASIC1.23□□□□□ -2.21
COL8A1P27658 RNU6-955P-201ENST00000410497 104 ntBASIC1.23□□□□□ -2.21
COL8A1P27658 MIR6767-201ENST00000637302 66 ntBASIC1.23□□□□□ -2.21
COL8A1P27658 RNU6-828P-201ENST00000364876 107 ntBASIC1.22□□□□□ -2.21
COL8A1P27658 RNY1P8-201ENST00000383970 114 ntBASIC1.22□□□□□ -2.21
COL8A1P27658 SNORA49-201ENST00000386157 136 ntBASIC1.22□□□□□ -2.21
COL8A1P27658 AL451105.1-201ENST00000450005 189 ntBASIC1.22□□□□□ -2.21
COL8A1P27658 SNORD124-201ENST00000459577 104 ntBASIC1.22□□□□□ -2.21
COL8A1P27658 RNU6-1204P-201ENST00000363948 107 ntBASIC1.21□□□□□ -2.22
COL8A1P27658 MIR4752-201ENST00000579672 72 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms