Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 SNORA25.18-201ENST00000607153 114 ntBASIC0.9□□□□□ -2.27
LIG1P18858 Y_RNA.375-201ENST00000365625 101 ntBASIC0.89□□□□□ -2.27
LIG1P18858 RNU6-1162P-201ENST00000384443 104 ntBASIC0.89□□□□□ -2.27
LIG1P18858 MIR521-2-201ENST00000384818 87 ntBASIC0.89□□□□□ -2.27
LIG1P18858 HMGN2P22-201ENST00000427588 175 ntBASIC0.89□□□□□ -2.27
LIG1P18858 RNU6-848P-201ENST00000515948 107 ntBASIC0.88□□□□□ -2.27
LIG1P18858 RNU6-617P-201ENST00000516147 107 ntBASIC0.88□□□□□ -2.27
LIG1P18858 RNU6-473P-201ENST00000516164 107 ntBASIC0.88□□□□□ -2.27
LIG1P18858 RNU6-1049P-201ENST00000516414 107 ntBASIC0.88□□□□□ -2.27
LIG1P18858 AL590095.2-201ENST00000604136 117 ntBASIC0.88□□□□□ -2.27
LIG1P18858 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.88□□□□□ -2.27
LIG1P18858 SNORA15B-2-201ENST00000384058 135 ntBASIC0.87□□□□□ -2.27
LIG1P18858 SNORA15B-1-201ENST00000384334 135 ntBASIC0.87□□□□□ -2.27
LIG1P18858 MIR518A1-201ENST00000385068 85 ntBASIC0.87□□□□□ -2.27
LIG1P18858 AC021146.9-201ENST00000512503 156 ntBASIC0.87□□□□□ -2.27
LIG1P18858 AL109933.3-201ENST00000619095 188 ntBASIC0.87□□□□□ -2.27
LIG1P18858 Y_RNA.125-201ENST00000363371 111 ntBASIC0.86□□□□□ -2.27
LIG1P18858 MIR548E-201ENST00000408287 88 ntBASIC0.86□□□□□ -2.27
LIG1P18858 CYP3A137P-201ENST00000562436 69 ntBASIC0.86□□□□□ -2.27
LIG1P18858 U7.6-201ENST00000610841 64 ntBASIC0.86□□□□□ -2.27
LIG1P18858 MIR6866-201ENST00000638146 69 ntBASIC0.86□□□□□ -2.27
LIG1P18858 RNA5SP215-201ENST00000363440 122 ntBASIC0.85□□□□□ -2.27
LIG1P18858 SNORD114-26-201ENST00000363543 72 ntBASIC0.85□□□□□ -2.27
LIG1P18858 SNORA63.6-201ENST00000364921 119 ntBASIC0.85□□□□□ -2.27
LIG1P18858 SNORA2A-201ENST00000383885 135 ntBASIC0.85□□□□□ -2.27
LIG1P18858 SNORD71-201ENST00000411292 86 ntBASIC0.85□□□□□ -2.27
LIG1P18858 snoU13.13-201ENST00000458842 104 ntBASIC0.85□□□□□ -2.27
LIG1P18858 RNU6-542P-201ENST00000516405 103 ntBASIC0.85□□□□□ -2.27
LIG1P18858 MIR5000-201ENST00000577717 103 ntBASIC0.85□□□□□ -2.27
LIG1P18858 MIR582-201ENST00000365731 98 ntBASIC0.84□□□□□ -2.27
LIG1P18858 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.83□□□□□ -2.28
LIG1P18858 RNU6-1089P-201ENST00000516473 104 ntBASIC0.83□□□□□ -2.28
LIG1P18858 MIR6835-201ENST00000621552 64 ntBASIC0.83□□□□□ -2.28
LIG1P18858 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
LIG1P18858 AC098934.3-201ENST00000430450 190 ntBASIC0.82□□□□□ -2.28
LIG1P18858 AC244090.1-201ENST00000441884 93 ntBASIC0.82□□□□□ -2.28
LIG1P18858 MIR20A-201ENST00000362279 71 ntBASIC0.81□□□□□ -2.28
LIG1P18858 MIR508-201ENST00000384857 115 ntBASIC0.81□□□□□ -2.28
LIG1P18858 AL157398.1-201ENST00000452981 186 ntBASIC0.81□□□□□ -2.28
LIG1P18858 RNU6-229P-201ENST00000516614 102 ntBASIC0.81□□□□□ -2.28
LIG1P18858 PVT1_3.1-201ENST00000620853 95 ntBASIC0.81□□□□□ -2.28
LIG1P18858 RNU6-669P-201ENST00000365575 107 ntBASIC0.8□□□□□ -2.28
LIG1P18858 AC110620.1-201ENST00000416042 228 ntBASIC0.8□□□□□ -2.28
LIG1P18858 RNU4-54P-201ENST00000516428 129 ntBASIC0.8□□□□□ -2.28
LIG1P18858 MIR4714-201ENST00000580728 77 ntBASIC0.8□□□□□ -2.28
LIG1P18858 MIR6755-201ENST00000619993 66 ntBASIC0.8□□□□□ -2.28
LIG1P18858 SNORA33.1-201ENST00000364957 130 ntBASIC0.79□□□□□ -2.28
LIG1P18858 Y_RNA.540-201ENST00000384638 111 ntBASIC0.79□□□□□ -2.28
LIG1P18858 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
LIG1P18858 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.78□□□□□ -2.28
LIG1P18858 Y_RNA.423-201ENST00000384057 113 ntBASIC0.78□□□□□ -2.28
LIG1P18858 MIR9-2-201ENST00000384838 87 ntBASIC0.78□□□□□ -2.28
LIG1P18858 RNU6-863P-201ENST00000515989 104 ntBASIC0.78□□□□□ -2.28
LIG1P18858 RNA5SP121-201ENST00000516537 101 ntBASIC0.78□□□□□ -2.28
LIG1P18858 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.78□□□□□ -2.29
LIG1P18858 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.77□□□□□ -2.29
LIG1P18858 MIR216A-201ENST00000385063 110 ntBASIC0.77□□□□□ -2.29
LIG1P18858 RNU6-1232P-201ENST00000516299 86 ntBASIC0.77□□□□□ -2.29
LIG1P18858 SNORD114-29-201ENST00000364819 70 ntBASIC0.76□□□□□ -2.29
LIG1P18858 RNA5SP299-201ENST00000391203 116 ntBASIC0.76□□□□□ -2.29
LIG1P18858 SNORD2-201ENST00000459163 69 ntBASIC0.76□□□□□ -2.29
LIG1P18858 RNA5SP436-201ENST00000516020 115 ntBASIC0.76□□□□□ -2.29
LIG1P18858 MIR4677-201ENST00000584153 80 ntBASIC0.76□□□□□ -2.29
LIG1P18858 MIR6779-201ENST00000617283 64 ntBASIC0.76□□□□□ -2.29
LIG1P18858 RNA5SP325-201ENST00000363756 130 ntBASIC0.75□□□□□ -2.29
LIG1P18858 RNU6-302P-201ENST00000365249 107 ntBASIC0.75□□□□□ -2.29
LIG1P18858 MIR516B1-201ENST00000385211 90 ntBASIC0.75□□□□□ -2.29
LIG1P18858 U2.7-201ENST00000619197 100 ntBASIC0.75□□□□□ -2.29
LIG1P18858 MIR501-201ENST00000390204 84 ntBASIC0.74□□□□□ -2.29
LIG1P18858 RN7SL793P-201ENST00000583259 296 ntBASIC0.74□□□□□ -2.29
LIG1P18858 MIR548AD-201ENST00000584780 82 ntBASIC0.74□□□□□ -2.29
LIG1P18858 SCARNA21.1-201ENST00000515996 128 ntBASIC0.73□□□□□ -2.29
LIG1P18858 SNORD44.1-201ENST00000363202 61 ntBASIC0.72□□□□□ -2.29
LIG1P18858 RNU6-945P-201ENST00000383947 107 ntBASIC0.72□□□□□ -2.29
LIG1P18858 MIR760-201ENST00000390220 80 ntBASIC0.72□□□□□ -2.29
LIG1P18858 AC243829.6-201ENST00000612652 106 ntBASIC0.72□□□□□ -2.29
LIG1P18858 SNORA25.5-201ENST00000363782 126 ntBASIC0.71□□□□□ -2.3
LIG1P18858 RNU7-174P-201ENST00000516248 59 ntBASIC0.71□□□□□ -2.3
LIG1P18858 RNU7-188P-201ENST00000517063 64 ntBASIC0.71□□□□□ -2.3
LIG1P18858 U6.96-201ENST00000636425 70 ntBASIC0.71□□□□□ -2.3
LIG1P18858 RNA5SP128-201ENST00000365305 116 ntBASIC0.7□□□□□ -2.3
LIG1P18858 MIR548C-201ENST00000384815 97 ntBASIC0.7□□□□□ -2.3
LIG1P18858 MIR517B-201ENST00000385102 67 ntBASIC0.7□□□□□ -2.3
LIG1P18858 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
LIG1P18858 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
LIG1P18858 RNU6-175P-201ENST00000516896 107 ntBASIC0.69□□□□□ -2.3
LIG1P18858 CYP3A54P-201ENST00000566950 75 ntBASIC0.69□□□□□ -2.3
LIG1P18858 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.68□□□□□ -2.3
LIG1P18858 RNU6-698P-201ENST00000363523 107 ntBASIC0.68□□□□□ -2.3
LIG1P18858 RNU6-34P-201ENST00000364874 107 ntBASIC0.68□□□□□ -2.3
LIG1P18858 MIR548V-201ENST00000584165 80 ntBASIC0.68□□□□□ -2.3
LIG1P18858 AC084368.1-201ENST00000620935 65 ntBASIC0.68□□□□□ -2.3
LIG1P18858 uc_338.17-201ENST00000619633 179 ntBASIC0.67□□□□□ -2.3
LIG1P18858 MIR193B-201ENST00000384907 83 ntBASIC0.66□□□□□ -2.3
LIG1P18858 MIR92A1-201ENST00000385233 78 ntBASIC0.66□□□□□ -2.3
LIG1P18858 MIR876-201ENST00000401147 81 ntBASIC0.66□□□□□ -2.3
LIG1P18858 MIR3925-201ENST00000584674 77 ntBASIC0.66□□□□□ -2.3
LIG1P18858 RNA5SP192-201ENST00000364404 120 ntBASIC0.65□□□□□ -2.31
LIG1P18858 RNU6-499P-201ENST00000365615 107 ntBASIC0.65□□□□□ -2.31
LIG1P18858 MIR630-201ENST00000384957 97 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 390.4 ms