Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 FABP5P4-201ENST00000437203 171 ntBASIC1.58□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 AC002429.1-201ENST00000437672 148 ntBASIC1.58□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 snoU13.13-201ENST00000458842 104 ntBASIC1.58□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 AC087343.1-201ENST00000477341 475 ntBASIC1.58□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 RNU7-174P-201ENST00000516248 59 ntBASIC1.58□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.58□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 RNU6-269P-201ENST00000391077 97 ntBASIC1.57□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 U7.7-201ENST00000459276 60 ntBASIC1.57□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.57□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 RNU6ATAC4P-201ENST00000387446 126 ntBASIC1.56□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 SCARNA16.5-201ENST00000517114 183 ntBASIC1.56□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 MIR4295-201ENST00000585286 85 ntBASIC1.56□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 U2.7-201ENST00000619197 100 ntBASIC1.56□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 RNA5SP484-201ENST00000458857 111 ntBASIC1.55□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 RNU6-1312P-201ENST00000362425 108 ntBASIC1.54□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 SNORA63.6-201ENST00000364921 119 ntBASIC1.54□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 RNU4-88P-201ENST00000411220 86 ntBASIC1.54□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 MIR3678-201ENST00000578455 94 ntBASIC1.54□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 SNORA25-201ENST00000384384 134 ntBASIC1.53□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 Y_RNA.633-201ENST00000459107 95 ntBASIC1.53□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 SCARNA17.3-201ENST00000516381 125 ntBASIC1.53□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 MIR4636-201ENST00000582271 80 ntBASIC1.53□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 MIR6513-201ENST00000621188 64 ntBASIC1.53□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 MIR373-201ENST00000362273 69 ntBASIC1.52□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 Y_RNA.125-201ENST00000363371 111 ntBASIC1.52□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 Y_RNA.379-201ENST00000365653 102 ntBASIC1.52□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 Y_RNA.407-201ENST00000383986 113 ntBASIC1.52□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 RNU7-119P-201ENST00000459279 63 ntBASIC1.52□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 U4.4-201ENST00000620626 117 ntBASIC1.52□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 AL162376.1-201ENST00000624117 175 ntBASIC1.52□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.51□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 SNORA33.1-201ENST00000364957 130 ntBASIC1.51□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 MIR573-201ENST00000384964 99 ntBASIC1.51□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 MIR936-201ENST00000401264 98 ntBASIC1.51□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 MIR2909-201ENST00000617113 69 ntBASIC1.51□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.5□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 MIR3612-201ENST00000579753 87 ntBASIC1.5□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 MIR1285-1-201ENST00000408593 84 ntBASIC1.49□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 SNORD114-21-201ENST00000606412 72 ntBASIC1.49□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 MIR4714-201ENST00000580728 77 ntBASIC1.48□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 MIR548AD-201ENST00000584780 82 ntBASIC1.48□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 Y_RNA.246-201ENST00000364495 108 ntBASIC1.47□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 MIR652-201ENST00000385278 98 ntBASIC1.47□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 MIR4723-201ENST00000585070 81 ntBASIC1.47□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 MIR6828-201ENST00000636181 60 ntBASIC1.47□□□□□ -2.17
SENP3-EIF4A1A0A087X0R7 MIR19B1-201ENST00000384829 87 ntBASIC1.46□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 MIR200A-201ENST00000384875 90 ntBASIC1.46□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 RNA5SP227-201ENST00000516184 113 ntBASIC1.46□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 AC025627.3-201ENST00000582078 182 ntBASIC1.46□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 RNU6ATAC29P-201ENST00000408088 125 ntBASIC1.45□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 AC006210.1-201ENST00000424882 111 ntBASIC1.45□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.45□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 RNU6-753P-201ENST00000363926 107 ntBASIC1.44□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.44□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 RNA5SP327-201ENST00000362494 101 ntBASIC1.43□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 SNORA25.8-201ENST00000364831 128 ntBASIC1.43□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 SNORD110-201ENST00000408189 75 ntBASIC1.43□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 MIR548E-201ENST00000408287 88 ntBASIC1.42□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 AL021921.1-201ENST00000442774 93 ntBASIC1.42□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 MIR4473-201ENST00000583731 91 ntBASIC1.42□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 Y_RNA.325-201ENST00000365171 122 ntBASIC1.41□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 RNU4-45P-201ENST00000365469 141 ntBASIC1.41□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 MIR582-201ENST00000365731 98 ntBASIC1.41□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 SNORA41B-201ENST00000384785 128 ntBASIC1.41□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 RNU6-231P-201ENST00000517122 103 ntBASIC1.41□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 U6.96-201ENST00000636425 70 ntBASIC1.41□□□□□ -2.18
SENP3-EIF4A1A0A087X0R7 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.4□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 MIR548AE1-201ENST00000583292 70 ntBASIC1.4□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 CYP3A54P-201ENST00000566950 75 ntBASIC1.39□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 SNORA9.1-201ENST00000362412 131 ntBASIC1.38□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 RNA5SP268-201ENST00000516828 124 ntBASIC1.38□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 MIR4698-201ENST00000577795 80 ntBASIC1.38□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.38□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.38□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 MIR18A-201ENST00000362310 71 ntBASIC1.37□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 SNORD26-201ENST00000384147 75 ntBASIC1.37□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 RNU6-955P-201ENST00000410497 104 ntBASIC1.37□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC1.37□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 DLEU2_4.2-201ENST00000616613 58 ntBASIC1.37□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 SNORD116-16-201ENST00000384533 92 ntBASIC1.36□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 SNORD124-201ENST00000459577 104 ntBASIC1.36□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 RNU6-980P-201ENST00000516925 103 ntBASIC1.36□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 MIR3973-201ENST00000579824 107 ntBASIC1.36□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 Y_RNA.74-201ENST00000362911 99 ntBASIC1.35□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 MIR150-201ENST00000385048 84 ntBASIC1.35□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 RNU6-518P-201ENST00000516056 96 ntBASIC1.35□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 SNORA36.1-201ENST00000363424 132 ntBASIC1.34□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 SNORD114-24-201ENST00000365029 72 ntBASIC1.34□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 MIR516B1-201ENST00000385211 90 ntBASIC1.34□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 RNU6-1246P-201ENST00000391064 107 ntBASIC1.34□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 SNORD2-201ENST00000459163 69 ntBASIC1.34□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 AC243829.6-201ENST00000612652 106 ntBASIC1.34□□□□□ -2.19
SENP3-EIF4A1A0A087X0R7 SNORD116.2-201ENST00000391251 93 ntBASIC1.33□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 AC244090.1-201ENST00000441884 93 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 254.5 ms