Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 RNU6-260P-201ENST00000384092 107 ntBASIC1.14□□□□□ -2.23
AP4E1Q9UPM8 RNA5SP227-201ENST00000516184 113 ntBASIC1.14□□□□□ -2.23
AP4E1Q9UPM8 AL109933.3-201ENST00000619095 188 ntBASIC1.14□□□□□ -2.23
AP4E1Q9UPM8 MIR1276-201ENST00000408707 83 ntBASIC1.13□□□□□ -2.23
AP4E1Q9UPM8 RNU5B-6P-201ENST00000516765 68 ntBASIC1.13□□□□□ -2.23
AP4E1Q9UPM8 RNA5SP268-201ENST00000516828 124 ntBASIC1.13□□□□□ -2.23
AP4E1Q9UPM8 AC018659.1-201ENST00000551083 169 ntBASIC1.13□□□□□ -2.23
AP4E1Q9UPM8 MIR7107-201ENST00000611489 80 ntBASIC1.13□□□□□ -2.23
AP4E1Q9UPM8 AL353765.1-201ENST00000605514 183 ntBASIC1.12□□□□□ -2.23
AP4E1Q9UPM8 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.11□□□□□ -2.23
AP4E1Q9UPM8 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.11□□□□□ -2.23
AP4E1Q9UPM8 RNU6-645P-201ENST00000364649 106 ntBASIC1.1□□□□□ -2.23
AP4E1Q9UPM8 RNU6-1187P-201ENST00000364771 110 ntBASIC1.1□□□□□ -2.23
AP4E1Q9UPM8 RNA5SP220-201ENST00000516298 104 ntBASIC1.1□□□□□ -2.23
AP4E1Q9UPM8 MIR4452-201ENST00000583004 71 ntBASIC1.1□□□□□ -2.23
AP4E1Q9UPM8 MIR4295-201ENST00000585286 85 ntBASIC1.1□□□□□ -2.23
AP4E1Q9UPM8 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
AP4E1Q9UPM8 RNU6-42P-201ENST00000384165 107 ntBASIC1.09□□□□□ -2.23
AP4E1Q9UPM8 MTND4LP1-201ENST00000446263 157 ntBASIC1.09□□□□□ -2.23
AP4E1Q9UPM8 AC087343.1-201ENST00000477341 475 ntBASIC1.09□□□□□ -2.23
AP4E1Q9UPM8 MIR4511-201ENST00000582784 87 ntBASIC1.09□□□□□ -2.23
AP4E1Q9UPM8 SNORD114-21-201ENST00000606412 72 ntBASIC1.09□□□□□ -2.23
AP4E1Q9UPM8 RNY1P8-201ENST00000383970 114 ntBASIC1.08□□□□□ -2.24
AP4E1Q9UPM8 OR2A41P-201ENST00000473586 105 ntBASIC1.08□□□□□ -2.24
AP4E1Q9UPM8 RNA5SP147-201ENST00000516493 109 ntBASIC1.08□□□□□ -2.24
AP4E1Q9UPM8 RNA5SP102-201ENST00000516865 106 ntBASIC1.08□□□□□ -2.24
AP4E1Q9UPM8 AC103706.3-201ENST00000636297 85 ntBASIC1.08□□□□□ -2.24
AP4E1Q9UPM8 SNORD114-4-201ENST00000363962 75 ntBASIC1.07□□□□□ -2.24
AP4E1Q9UPM8 RNA5SP222-201ENST00000411039 105 ntBASIC1.07□□□□□ -2.24
AP4E1Q9UPM8 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.07□□□□□ -2.24
AP4E1Q9UPM8 MIR6734-201ENST00000621166 68 ntBASIC1.07□□□□□ -2.24
AP4E1Q9UPM8 MIR6739-201ENST00000622461 75 ntBASIC1.07□□□□□ -2.24
AP4E1Q9UPM8 RNU6-668P-201ENST00000364180 107 ntBASIC1.06□□□□□ -2.24
AP4E1Q9UPM8 MIR9-2-201ENST00000384838 87 ntBASIC1.06□□□□□ -2.24
AP4E1Q9UPM8 RNU6-656P-201ENST00000516785 107 ntBASIC1.06□□□□□ -2.24
AP4E1Q9UPM8 AC006210.1-201ENST00000424882 111 ntBASIC1.05□□□□□ -2.24
AP4E1Q9UPM8 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.05□□□□□ -2.24
AP4E1Q9UPM8 MIR4661-201ENST00000582720 75 ntBASIC1.05□□□□□ -2.24
AP4E1Q9UPM8 MIR548AE1-201ENST00000583292 70 ntBASIC1.05□□□□□ -2.24
AP4E1Q9UPM8 RNU4-38P-201ENST00000364472 129 ntBASIC1.04□□□□□ -2.24
AP4E1Q9UPM8 Y_RNA.375-201ENST00000365625 101 ntBASIC1.04□□□□□ -2.24
AP4E1Q9UPM8 MIR489-201ENST00000384923 84 ntBASIC1.04□□□□□ -2.24
AP4E1Q9UPM8 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.04□□□□□ -2.24
AP4E1Q9UPM8 RNU1-29P-201ENST00000606574 126 ntBASIC1.04□□□□□ -2.24
AP4E1Q9UPM8 SNORA70.25-201ENST00000612741 95 ntBASIC1.04□□□□□ -2.24
AP4E1Q9UPM8 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
AP4E1Q9UPM8 Y_RNA.407-201ENST00000383986 113 ntBASIC1.03□□□□□ -2.24
AP4E1Q9UPM8 MIR4473-201ENST00000583731 91 ntBASIC1.03□□□□□ -2.24
AP4E1Q9UPM8 Y_RNA.250-201ENST00000364542 110 ntBASIC1.02□□□□□ -2.25
AP4E1Q9UPM8 RNU6-669P-201ENST00000365575 107 ntBASIC1.02□□□□□ -2.25
AP4E1Q9UPM8 SNORD110-201ENST00000408189 75 ntBASIC1.02□□□□□ -2.25
AP4E1Q9UPM8 MIR4752-201ENST00000579672 72 ntBASIC1.02□□□□□ -2.25
AP4E1Q9UPM8 RNA5SP517-201ENST00000364724 117 ntBASIC1.01□□□□□ -2.25
AP4E1Q9UPM8 MIR652-201ENST00000385278 98 ntBASIC1.01□□□□□ -2.25
AP4E1Q9UPM8 SCARNA17.3-201ENST00000516381 125 ntBASIC1.01□□□□□ -2.25
AP4E1Q9UPM8 MIR140-201ENST00000385282 100 ntBASIC1□□□□□ -2.25
AP4E1Q9UPM8 snoU13.13-201ENST00000458842 104 ntBASIC1□□□□□ -2.25
AP4E1Q9UPM8 AC103810.9-201ENST00000606688 112 ntBASIC1□□□□□ -2.25
AP4E1Q9UPM8 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.99□□□□□ -2.25
AP4E1Q9UPM8 SNORD114-22-201ENST00000365423 72 ntBASIC0.99□□□□□ -2.25
AP4E1Q9UPM8 MIR582-201ENST00000365731 98 ntBASIC0.99□□□□□ -2.25
AP4E1Q9UPM8 AC110620.1-201ENST00000416042 228 ntBASIC0.99□□□□□ -2.25
AP4E1Q9UPM8 AC021146.9-201ENST00000512503 156 ntBASIC0.99□□□□□ -2.25
AP4E1Q9UPM8 ACA64.5-201ENST00000516207 127 ntBASIC0.99□□□□□ -2.25
AP4E1Q9UPM8 SNORA36.2-201ENST00000384004 127 ntBASIC0.98□□□□□ -2.25
AP4E1Q9UPM8 MIR548E-201ENST00000408287 88 ntBASIC0.98□□□□□ -2.25
AP4E1Q9UPM8 Y_RNA.633-201ENST00000459107 95 ntBASIC0.98□□□□□ -2.25
AP4E1Q9UPM8 RNU6-542P-201ENST00000516405 103 ntBASIC0.98□□□□□ -2.25
AP4E1Q9UPM8 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.98□□□□□ -2.25
AP4E1Q9UPM8 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.98□□□□□ -2.25
AP4E1Q9UPM8 SNORA63.6-201ENST00000364921 119 ntBASIC0.97□□□□□ -2.25
AP4E1Q9UPM8 MIR521-2-201ENST00000384818 87 ntBASIC0.97□□□□□ -2.25
AP4E1Q9UPM8 MIR608-201ENST00000384820 100 ntBASIC0.97□□□□□ -2.25
AP4E1Q9UPM8 HMGN2P22-201ENST00000427588 175 ntBASIC0.97□□□□□ -2.25
AP4E1Q9UPM8 AL157398.1-201ENST00000452981 186 ntBASIC0.97□□□□□ -2.25
AP4E1Q9UPM8 SNORA25.18-201ENST00000607153 114 ntBASIC0.97□□□□□ -2.25
AP4E1Q9UPM8 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.95□□□□□ -2.26
AP4E1Q9UPM8 RNA5SP215-201ENST00000363440 122 ntBASIC0.95□□□□□ -2.26
AP4E1Q9UPM8 SNORD114-27-201ENST00000363766 70 ntBASIC0.95□□□□□ -2.26
AP4E1Q9UPM8 RNU6-1162P-201ENST00000384443 104 ntBASIC0.95□□□□□ -2.26
AP4E1Q9UPM8 AC069271.1-201ENST00000445577 156 ntBASIC0.95□□□□□ -2.26
AP4E1Q9UPM8 RNU6-1089P-201ENST00000516473 104 ntBASIC0.95□□□□□ -2.26
AP4E1Q9UPM8 AC092634.7-201ENST00000621022 103 ntBASIC0.95□□□□□ -2.26
AP4E1Q9UPM8 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
AP4E1Q9UPM8 SNORD118-201ENST00000363593 134 ntBASIC0.94□□□□□ -2.26
AP4E1Q9UPM8 MIR532-201ENST00000385025 91 ntBASIC0.94□□□□□ -2.26
AP4E1Q9UPM8 RNA5SP299-201ENST00000391203 116 ntBASIC0.94□□□□□ -2.26
AP4E1Q9UPM8 MIR5706-201ENST00000579841 80 ntBASIC0.94□□□□□ -2.26
AP4E1Q9UPM8 RPL39P28-201ENST00000465655 155 ntBASIC0.93□□□□□ -2.26
AP4E1Q9UPM8 SCARNA21.1-201ENST00000515996 128 ntBASIC0.93□□□□□ -2.26
AP4E1Q9UPM8 RNU1-93P-201ENST00000364704 169 ntBASIC0.92□□□□□ -2.26
AP4E1Q9UPM8 SNORA33.1-201ENST00000364957 130 ntBASIC0.92□□□□□ -2.26
AP4E1Q9UPM8 RNU6-1223P-201ENST00000517124 104 ntBASIC0.92□□□□□ -2.26
AP4E1Q9UPM8 MIR96-201ENST00000362288 78 ntBASIC0.91□□□□□ -2.26
AP4E1Q9UPM8 Y_RNA.125-201ENST00000363371 111 ntBASIC0.91□□□□□ -2.26
AP4E1Q9UPM8 SNORA15B-2-201ENST00000384058 135 ntBASIC0.91□□□□□ -2.26
AP4E1Q9UPM8 SNORA15B-1-201ENST00000384334 135 ntBASIC0.91□□□□□ -2.26
AP4E1Q9UPM8 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.91□□□□□ -2.26
AP4E1Q9UPM8 SNORA40.8-201ENST00000411034 126 ntBASIC0.91□□□□□ -2.26
AP4E1Q9UPM8 MIR151B-201ENST00000584249 96 ntBASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 185.9 ms