Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.57□□□□□ -2.5
CPSF3Q9UKF6 RNU6-554P-201ENST00000410466 106 ntBASIC-0.57□□□□□ -2.5
CPSF3Q9UKF6 MIR4802-201ENST00000581881 80 ntBASIC-0.57□□□□□ -2.5
CPSF3Q9UKF6 SNORD114-11-201ENST00000363738 75 ntBASIC-0.58□□□□□ -2.5
CPSF3Q9UKF6 RNU6-106P-201ENST00000384405 107 ntBASIC-0.58□□□□□ -2.5
CPSF3Q9UKF6 RNU6-1168P-201ENST00000390831 104 ntBASIC-0.58□□□□□ -2.5
CPSF3Q9UKF6 SNORD90-201ENST00000391145 111 ntBASIC-0.58□□□□□ -2.5
CPSF3Q9UKF6 SNORD126-201ENST00000459475 77 ntBASIC-0.58□□□□□ -2.5
CPSF3Q9UKF6 RNU6-62P-201ENST00000516526 102 ntBASIC-0.58□□□□□ -2.5
CPSF3Q9UKF6 RNU6-495P-201ENST00000362995 107 ntBASIC-0.59□□□□□ -2.5
CPSF3Q9UKF6 Y_RNA.96-201ENST00000363092 109 ntBASIC-0.59□□□□□ -2.5
CPSF3Q9UKF6 Y_RNA.374-201ENST00000365606 101 ntBASIC-0.59□□□□□ -2.5
CPSF3Q9UKF6 RNU6-22P-201ENST00000384355 107 ntBASIC-0.59□□□□□ -2.5
CPSF3Q9UKF6 RNU6-900P-201ENST00000384498 102 ntBASIC-0.59□□□□□ -2.5
CPSF3Q9UKF6 SNORA19-201ENST00000384737 128 ntBASIC-0.59□□□□□ -2.5
CPSF3Q9UKF6 RNU7-61P-201ENST00000515897 61 ntBASIC-0.59□□□□□ -2.5
CPSF3Q9UKF6 SNORA18.5-201ENST00000516616 101 ntBASIC-0.59□□□□□ -2.5
CPSF3Q9UKF6 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-0.6□□□□□ -2.51
CPSF3Q9UKF6 SNORD2-201ENST00000459163 69 ntBASIC-0.6□□□□□ -2.51
CPSF3Q9UKF6 RNA5SP66-201ENST00000517178 101 ntBASIC-0.6□□□□□ -2.51
CPSF3Q9UKF6 SNORD116-10-201ENST00000363791 102 ntBASIC-0.61□□□□□ -2.51
CPSF3Q9UKF6 RNU6-1117P-201ENST00000384525 104 ntBASIC-0.61□□□□□ -2.51
CPSF3Q9UKF6 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.61□□□□□ -2.51
CPSF3Q9UKF6 RNA5SP451-201ENST00000410588 110 ntBASIC-0.61□□□□□ -2.51
CPSF3Q9UKF6 RNU6-589P-201ENST00000516485 107 ntBASIC-0.61□□□□□ -2.51
CPSF3Q9UKF6 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.61□□□□□ -2.51
CPSF3Q9UKF6 AC026421.1-201ENST00000519101 163 ntBASIC-0.61□□□□□ -2.51
CPSF3Q9UKF6 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-0.61□□□□□ -2.51
CPSF3Q9UKF6 RNU4-32P-201ENST00000363404 141 ntBASIC-0.62□□□□□ -2.51
CPSF3Q9UKF6 RNU6-1056P-201ENST00000383996 107 ntBASIC-0.62□□□□□ -2.51
CPSF3Q9UKF6 RNU6-109P-201ENST00000516364 107 ntBASIC-0.62□□□□□ -2.51
CPSF3Q9UKF6 RNU6-184P-201ENST00000516514 107 ntBASIC-0.62□□□□□ -2.51
CPSF3Q9UKF6 MIR4636-201ENST00000582271 80 ntBASIC-0.62□□□□□ -2.51
CPSF3Q9UKF6 RNU6-834P-201ENST00000362367 110 ntBASIC-0.63□□□□□ -2.51
CPSF3Q9UKF6 Y_RNA.107-201ENST00000363190 121 ntBASIC-0.63□□□□□ -2.51
CPSF3Q9UKF6 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.63□□□□□ -2.51
CPSF3Q9UKF6 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.63□□□□□ -2.51
CPSF3Q9UKF6 SNORD56B-201ENST00000384713 71 ntBASIC-0.63□□□□□ -2.51
CPSF3Q9UKF6 RNU7-55P-201ENST00000459426 62 ntBASIC-0.63□□□□□ -2.51
CPSF3Q9UKF6 MIR4493-201ENST00000584016 73 ntBASIC-0.63□□□□□ -2.51
CPSF3Q9UKF6 MIR101-1-201ENST00000362265 75 ntBASIC-0.64□□□□□ -2.51
CPSF3Q9UKF6 RNY4P3-201ENST00000365254 95 ntBASIC-0.64□□□□□ -2.51
CPSF3Q9UKF6 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.64□□□□□ -2.51
CPSF3Q9UKF6 SNORA32.3-201ENST00000384772 121 ntBASIC-0.64□□□□□ -2.51
CPSF3Q9UKF6 MIR196A2-201ENST00000385189 110 ntBASIC-0.64□□□□□ -2.51
CPSF3Q9UKF6 SNORD75.2-201ENST00000408784 58 ntBASIC-0.64□□□□□ -2.51
CPSF3Q9UKF6 Z95118.1-201ENST00000421372 247 ntBASIC-0.64□□□□□ -2.51
CPSF3Q9UKF6 snoU13.13-201ENST00000458842 104 ntBASIC-0.64□□□□□ -2.51
CPSF3Q9UKF6 MIR3910-1-201ENST00000580936 111 ntBASIC-0.64□□□□□ -2.51
CPSF3Q9UKF6 Y_RNA.818-201ENST00000618813 71 ntBASIC-0.64□□□□□ -2.51
CPSF3Q9UKF6 uc_338.36-201ENST00000622331 158 ntBASIC-0.64□□□□□ -2.51
CPSF3Q9UKF6 Y_RNA.93-201ENST00000363066 109 ntBASIC-0.65□□□□□ -2.51
CPSF3Q9UKF6 Y_RNA.609-201ENST00000410669 89 ntBASIC-0.65□□□□□ -2.51
CPSF3Q9UKF6 MTATP6P29-201ENST00000415057 132 ntBASIC-0.65□□□□□ -2.51
CPSF3Q9UKF6 RNU7-24P-201ENST00000458867 62 ntBASIC-0.65□□□□□ -2.51
CPSF3Q9UKF6 SNORA40.17-201ENST00000517256 115 ntBASIC-0.65□□□□□ -2.51
CPSF3Q9UKF6 RNU6-502P-201ENST00000362419 108 ntBASIC-0.66□□□□□ -2.52
CPSF3Q9UKF6 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.66□□□□□ -2.52
CPSF3Q9UKF6 MIR604-201ENST00000384880 94 ntBASIC-0.66□□□□□ -2.52
CPSF3Q9UKF6 RNU6-1154P-201ENST00000391001 104 ntBASIC-0.66□□□□□ -2.52
CPSF3Q9UKF6 AL445193.1-201ENST00000441183 141 ntBASIC-0.66□□□□□ -2.52
CPSF3Q9UKF6 RNU6-479P-201ENST00000516348 105 ntBASIC-0.66□□□□□ -2.52
CPSF3Q9UKF6 MIR4432-201ENST00000581823 84 ntBASIC-0.66□□□□□ -2.52
CPSF3Q9UKF6 MIR548AZ-201ENST00000616567 95 ntBASIC-0.66□□□□□ -2.52
CPSF3Q9UKF6 RNU6-990P-201ENST00000364385 104 ntBASIC-0.67□□□□□ -2.52
CPSF3Q9UKF6 SNORA63.6-201ENST00000364921 119 ntBASIC-0.67□□□□□ -2.52
CPSF3Q9UKF6 RNU6-35P-201ENST00000384530 107 ntBASIC-0.67□□□□□ -2.52
CPSF3Q9UKF6 RNU6-901P-201ENST00000384593 106 ntBASIC-0.67□□□□□ -2.52
CPSF3Q9UKF6 MIR1265-201ENST00000408444 86 ntBASIC-0.67□□□□□ -2.52
CPSF3Q9UKF6 RNU6-162P-201ENST00000516228 103 ntBASIC-0.67□□□□□ -2.52
CPSF3Q9UKF6 RNU6-758P-201ENST00000516292 89 ntBASIC-0.67□□□□□ -2.52
CPSF3Q9UKF6 RNA5SP395-201ENST00000516567 118 ntBASIC-0.67□□□□□ -2.52
CPSF3Q9UKF6 U7.3-201ENST00000616123 62 ntBASIC-0.67□□□□□ -2.52
CPSF3Q9UKF6 AC093726.3-201ENST00000637588 150 ntBASIC-0.67□□□□□ -2.52
CPSF3Q9UKF6 AC132825.6-201ENST00000638861 357 ntBASIC-0.67□□□□□ -2.52
CPSF3Q9UKF6 RNU6-766P-201ENST00000362478 107 ntBASIC-0.68□□□□□ -2.52
CPSF3Q9UKF6 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.69□□□□□ -2.52
CPSF3Q9UKF6 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.69□□□□□ -2.52
CPSF3Q9UKF6 AC114755.3-201ENST00000481111 251 ntBASIC-0.69□□□□□ -2.52
CPSF3Q9UKF6 RNU6-313P-201ENST00000516317 112 ntBASIC-0.69□□□□□ -2.52
CPSF3Q9UKF6 Y_RNA.709-201ENST00000516952 92 ntBASIC-0.69□□□□□ -2.52
CPSF3Q9UKF6 MIR4280-201ENST00000582178 76 ntBASIC-0.69□□□□□ -2.52
CPSF3Q9UKF6 RNU6-382P-201ENST00000365181 106 ntBASIC-0.7□□□□□ -2.52
CPSF3Q9UKF6 Y_RNA.558-201ENST00000384685 113 ntBASIC-0.7□□□□□ -2.52
CPSF3Q9UKF6 RNU6-284P-201ENST00000411105 106 ntBASIC-0.7□□□□□ -2.52
CPSF3Q9UKF6 RNU5F-1-201ENST00000362507 117 ntBASIC-0.71□□□□□ -2.52
CPSF3Q9UKF6 Y_RNA.190-201ENST00000363964 101 ntBASIC-0.71□□□□□ -2.52
CPSF3Q9UKF6 snoU13.17-201ENST00000458802 104 ntBASIC-0.71□□□□□ -2.52
CPSF3Q9UKF6 MIR4796-201ENST00000580742 81 ntBASIC-0.71□□□□□ -2.52
CPSF3Q9UKF6 MIR6773-201ENST00000612812 74 ntBASIC-0.71□□□□□ -2.52
CPSF3Q9UKF6 RNU6-824P-201ENST00000363724 104 ntBASIC-0.72□□□□□ -2.52
CPSF3Q9UKF6 RNU6-973P-201ENST00000364690 107 ntBASIC-0.72□□□□□ -2.52
CPSF3Q9UKF6 MIR224-201ENST00000384889 81 ntBASIC-0.72□□□□□ -2.52
CPSF3Q9UKF6 RNA5SP169-201ENST00000517268 117 ntBASIC-0.72□□□□□ -2.52
CPSF3Q9UKF6 SNORD113-1-201ENST00000365321 69 ntBASIC-0.73□□□□□ -2.53
CPSF3Q9UKF6 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.73□□□□□ -2.53
CPSF3Q9UKF6 AC006254.2-201ENST00000603259 279 ntBASIC-0.73□□□□□ -2.53
CPSF3Q9UKF6 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.74□□□□□ -2.53
CPSF3Q9UKF6 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.74□□□□□ -2.53
CPSF3Q9UKF6 Y_RNA.544-201ENST00000384650 113 ntBASIC-0.74□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 165.7 ms