Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC132825.6-201ENST00000638861 357 ntBASIC-0.31□□□□□ -2.46
LIME1Q9H400 SNORA63.2-201ENST00000362603 126 ntBASIC-0.32□□□□□ -2.46
LIME1Q9H400 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.32□□□□□ -2.46
LIME1Q9H400 MIR1302-5-201ENST00000408164 150 ntBASIC-0.32□□□□□ -2.46
LIME1Q9H400 RNU6-519P-201ENST00000410590 108 ntBASIC-0.32□□□□□ -2.46
LIME1Q9H400 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.32□□□□□ -2.46
LIME1Q9H400 RPS29P8-201ENST00000445109 171 ntBASIC-0.32□□□□□ -2.46
LIME1Q9H400 RNU6-62P-201ENST00000516526 102 ntBASIC-0.32□□□□□ -2.46
LIME1Q9H400 MIR6129-201ENST00000616087 109 ntBASIC-0.32□□□□□ -2.46
LIME1Q9H400 Y_RNA.818-201ENST00000618813 71 ntBASIC-0.32□□□□□ -2.46
LIME1Q9H400 SNORD114-12-201ENST00000365400 75 ntBASIC-0.33□□□□□ -2.46
LIME1Q9H400 SNORD58A-201ENST00000383875 65 ntBASIC-0.33□□□□□ -2.46
LIME1Q9H400 SNORA24B-201ENST00000384176 131 ntBASIC-0.33□□□□□ -2.46
LIME1Q9H400 SNORA49-201ENST00000386157 136 ntBASIC-0.33□□□□□ -2.46
LIME1Q9H400 SNORD116-10-201ENST00000363791 102 ntBASIC-0.34□□□□□ -2.46
LIME1Q9H400 RNU6-1056P-201ENST00000383996 107 ntBASIC-0.34□□□□□ -2.46
LIME1Q9H400 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.34□□□□□ -2.46
LIME1Q9H400 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.34□□□□□ -2.46
LIME1Q9H400 MIR590-201ENST00000385008 97 ntBASIC-0.34□□□□□ -2.46
LIME1Q9H400 RNA5SP300-201ENST00000391197 107 ntBASIC-0.34□□□□□ -2.46
LIME1Q9H400 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.35□□□□□ -2.47
LIME1Q9H400 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.35□□□□□ -2.47
LIME1Q9H400 MIR224-201ENST00000384889 81 ntBASIC-0.35□□□□□ -2.47
LIME1Q9H400 FGF7P7-201ENST00000514120 227 ntBASIC-0.35□□□□□ -2.47
LIME1Q9H400 Y_RNA.93-201ENST00000363066 109 ntBASIC-0.36□□□□□ -2.47
LIME1Q9H400 SNORD114-4-201ENST00000363962 75 ntBASIC-0.36□□□□□ -2.47
LIME1Q9H400 SNORA19-201ENST00000384737 128 ntBASIC-0.36□□□□□ -2.47
LIME1Q9H400 RNU6-1154P-201ENST00000391001 104 ntBASIC-0.36□□□□□ -2.47
LIME1Q9H400 MIR548E-201ENST00000408287 88 ntBASIC-0.36□□□□□ -2.47
LIME1Q9H400 SNORD42B-201ENST00000458893 67 ntBASIC-0.36□□□□□ -2.47
LIME1Q9H400 MIR548AX-201ENST00000580117 73 ntBASIC-0.36□□□□□ -2.47
LIME1Q9H400 AC145423.2-201ENST00000610631 239 ntBASIC-0.36□□□□□ -2.47
LIME1Q9H400 Y_RNA.107-201ENST00000363190 121 ntBASIC-0.37□□□□□ -2.47
LIME1Q9H400 MIR582-201ENST00000365731 98 ntBASIC-0.37□□□□□ -2.47
LIME1Q9H400 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.37□□□□□ -2.47
LIME1Q9H400 RNA5SP292-201ENST00000390974 118 ntBASIC-0.37□□□□□ -2.47
LIME1Q9H400 AL603908.1-201ENST00000406098 201 ntBASIC-0.37□□□□□ -2.47
LIME1Q9H400 RNU7-61P-201ENST00000515897 61 ntBASIC-0.37□□□□□ -2.47
LIME1Q9H400 RNU6-313P-201ENST00000516317 112 ntBASIC-0.37□□□□□ -2.47
LIME1Q9H400 RNU6-158P-201ENST00000517104 100 ntBASIC-0.37□□□□□ -2.47
LIME1Q9H400 AL590491.3-201ENST00000610731 82 ntBASIC-0.37□□□□□ -2.47
LIME1Q9H400 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.37□□□□□ -2.47
LIME1Q9H400 MIR8064-201ENST00000612863 90 ntBASIC-0.37□□□□□ -2.47
LIME1Q9H400 RNU6-766P-201ENST00000362478 107 ntBASIC-0.38□□□□□ -2.47
LIME1Q9H400 SNORD14C-201ENST00000365382 88 ntBASIC-0.38□□□□□ -2.47
LIME1Q9H400 RNU2-51P-201ENST00000410708 197 ntBASIC-0.38□□□□□ -2.47
LIME1Q9H400 SNORD2-201ENST00000459163 69 ntBASIC-0.38□□□□□ -2.47
LIME1Q9H400 Y_RNA.709-201ENST00000516952 92 ntBASIC-0.38□□□□□ -2.47
LIME1Q9H400 MIR3140-201ENST00000583685 90 ntBASIC-0.38□□□□□ -2.47
LIME1Q9H400 MIR4263-201ENST00000584745 83 ntBASIC-0.38□□□□□ -2.47
LIME1Q9H400 RNU6-495P-201ENST00000362995 107 ntBASIC-0.39□□□□□ -2.47
LIME1Q9H400 Y_RNA.273-201ENST00000364703 102 ntBASIC-0.39□□□□□ -2.47
LIME1Q9H400 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.39□□□□□ -2.47
LIME1Q9H400 MIR9-2-201ENST00000384838 87 ntBASIC-0.39□□□□□ -2.47
LIME1Q9H400 RNA5SP266-201ENST00000410273 108 ntBASIC-0.39□□□□□ -2.47
LIME1Q9H400 RNU6-455P-201ENST00000384681 107 ntBASIC-0.4□□□□□ -2.47
LIME1Q9H400 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.4□□□□□ -2.47
LIME1Q9H400 RNU7-24P-201ENST00000458867 62 ntBASIC-0.4□□□□□ -2.47
LIME1Q9H400 RNA5SP67-201ENST00000516422 131 ntBASIC-0.4□□□□□ -2.47
LIME1Q9H400 RNU6-320P-201ENST00000516511 106 ntBASIC-0.4□□□□□ -2.47
LIME1Q9H400 RNU6-719P-201ENST00000516671 104 ntBASIC-0.4□□□□□ -2.47
LIME1Q9H400 RNU6-762P-201ENST00000517107 102 ntBASIC-0.4□□□□□ -2.47
LIME1Q9H400 SNORA18.5-201ENST00000516616 101 ntBASIC-0.41□□□□□ -2.48
LIME1Q9H400 SNORD115-25-201ENST00000362619 82 ntBASIC-0.42□□□□□ -2.48
LIME1Q9H400 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.42□□□□□ -2.48
LIME1Q9H400 SNORD75.2-201ENST00000408784 58 ntBASIC-0.42□□□□□ -2.48
LIME1Q9H400 RNU6-109P-201ENST00000516364 107 ntBASIC-0.42□□□□□ -2.48
LIME1Q9H400 RNU6-184P-201ENST00000516514 107 ntBASIC-0.42□□□□□ -2.48
LIME1Q9H400 AC026421.1-201ENST00000519101 163 ntBASIC-0.42□□□□□ -2.48
LIME1Q9H400 MIR4788-201ENST00000639104 80 ntBASIC-0.42□□□□□ -2.48
LIME1Q9H400 RNA5SP275-201ENST00000363936 118 ntBASIC-0.43□□□□□ -2.48
LIME1Q9H400 RNU6-900P-201ENST00000384498 102 ntBASIC-0.43□□□□□ -2.48
LIME1Q9H400 SNORD90-201ENST00000391145 111 ntBASIC-0.43□□□□□ -2.48
LIME1Q9H400 RNU7-55P-201ENST00000459426 62 ntBASIC-0.43□□□□□ -2.48
LIME1Q9H400 Y_RNA.544-201ENST00000384650 113 ntBASIC-0.44□□□□□ -2.48
LIME1Q9H400 MTATP6P29-201ENST00000415057 132 ntBASIC-0.44□□□□□ -2.48
LIME1Q9H400 SNORA40.17-201ENST00000517256 115 ntBASIC-0.44□□□□□ -2.48
LIME1Q9H400 AP000676.1-201ENST00000533307 52 ntBASIC-0.44□□□□□ -2.48
LIME1Q9H400 U7.3-201ENST00000616123 62 ntBASIC-0.44□□□□□ -2.48
LIME1Q9H400 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.45□□□□□ -2.48
LIME1Q9H400 SNORA32.3-201ENST00000384772 121 ntBASIC-0.45□□□□□ -2.48
LIME1Q9H400 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.45□□□□□ -2.48
LIME1Q9H400 AC096531.1-201ENST00000419107 107 ntBASIC-0.45□□□□□ -2.48
LIME1Q9H400 AC097510.1-201ENST00000510945 133 ntBASIC-0.45□□□□□ -2.48
LIME1Q9H400 RNU4-32P-201ENST00000363404 141 ntBASIC-0.46□□□□□ -2.48
LIME1Q9H400 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.46□□□□□ -2.48
LIME1Q9H400 RNY4P18-201ENST00000391107 89 ntBASIC-0.46□□□□□ -2.48
LIME1Q9H400 Y_RNA.609-201ENST00000410669 89 ntBASIC-0.46□□□□□ -2.48
LIME1Q9H400 SNORD126-201ENST00000459475 77 ntBASIC-0.46□□□□□ -2.48
LIME1Q9H400 RNU5F-1-201ENST00000362507 117 ntBASIC-0.47□□□□□ -2.48
LIME1Q9H400 SNORD114-11-201ENST00000363738 75 ntBASIC-0.47□□□□□ -2.48
LIME1Q9H400 RNU6-755P-201ENST00000364400 103 ntBASIC-0.47□□□□□ -2.48
LIME1Q9H400 SNORA63.6-201ENST00000364921 119 ntBASIC-0.47□□□□□ -2.48
LIME1Q9H400 Y_RNA.558-201ENST00000384685 113 ntBASIC-0.47□□□□□ -2.48
LIME1Q9H400 Y_RNA.629-201ENST00000411368 105 ntBASIC-0.47□□□□□ -2.48
LIME1Q9H400 MTATP8P2-201ENST00000435212 202 ntBASIC-0.47□□□□□ -2.48
LIME1Q9H400 RNA5SP66-201ENST00000517178 101 ntBASIC-0.47□□□□□ -2.48
LIME1Q9H400 SNORD56B-201ENST00000384713 71 ntBASIC-0.48□□□□□ -2.49
LIME1Q9H400 AL031737.1-201ENST00000450125 223 ntBASIC-0.48□□□□□ -2.49
LIME1Q9H400 MIR4796-201ENST00000580742 81 ntBASIC-0.48□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms