Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
UBE3DQ7Z6J8 RNU6-110P-201ENST00000384508 104 ntBASIC0.96□□□□□ -2.26
UBE3DQ7Z6J8 RNU6-630P-201ENST00000391258 106 ntBASIC0.96□□□□□ -2.26
UBE3DQ7Z6J8 SNORD110-201ENST00000408189 75 ntBASIC0.96□□□□□ -2.26
UBE3DQ7Z6J8 AC087343.1-201ENST00000477341 475 ntBASIC0.96□□□□□ -2.26
UBE3DQ7Z6J8 MIR337-201ENST00000362281 93 ntBASIC0.95□□□□□ -2.26
UBE3DQ7Z6J8 RNU4-38P-201ENST00000364472 129 ntBASIC0.95□□□□□ -2.26
UBE3DQ7Z6J8 Y_RNA.340-201ENST00000365330 92 ntBASIC0.95□□□□□ -2.26
UBE3DQ7Z6J8 RNU5B-6P-201ENST00000516765 68 ntBASIC0.95□□□□□ -2.26
UBE3DQ7Z6J8 AC018659.1-201ENST00000551083 169 ntBASIC0.95□□□□□ -2.26
UBE3DQ7Z6J8 AC005520.4-201ENST00000604337 90 ntBASIC0.95□□□□□ -2.26
UBE3DQ7Z6J8 SNORD116-24-201ENST00000384549 92 ntBASIC0.94□□□□□ -2.26
UBE3DQ7Z6J8 MIR203A-201ENST00000384836 110 ntBASIC0.94□□□□□ -2.26
UBE3DQ7Z6J8 RNU6-1053P-201ENST00000515930 101 ntBASIC0.94□□□□□ -2.26
UBE3DQ7Z6J8 MIR6739-201ENST00000622461 75 ntBASIC0.94□□□□□ -2.26
UBE3DQ7Z6J8 SNORA36.2-201ENST00000384004 127 ntBASIC0.93□□□□□ -2.26
UBE3DQ7Z6J8 MIR1265-201ENST00000408444 86 ntBASIC0.93□□□□□ -2.26
UBE3DQ7Z6J8 SCARNA17.3-201ENST00000516381 125 ntBASIC0.93□□□□□ -2.26
UBE3DQ7Z6J8 AC103810.9-201ENST00000606688 112 ntBASIC0.93□□□□□ -2.26
UBE3DQ7Z6J8 AC092634.7-201ENST00000621022 103 ntBASIC0.93□□□□□ -2.26
UBE3DQ7Z6J8 RNU6-848P-201ENST00000515948 107 ntBASIC0.92□□□□□ -2.26
UBE3DQ7Z6J8 RNU6-617P-201ENST00000516147 107 ntBASIC0.92□□□□□ -2.26
UBE3DQ7Z6J8 RNU6-473P-201ENST00000516164 107 ntBASIC0.92□□□□□ -2.26
UBE3DQ7Z6J8 RNU6-1049P-201ENST00000516414 107 ntBASIC0.92□□□□□ -2.26
UBE3DQ7Z6J8 AL590095.2-201ENST00000604136 117 ntBASIC0.92□□□□□ -2.26
UBE3DQ7Z6J8 U7.6-201ENST00000610841 64 ntBASIC0.92□□□□□ -2.26
UBE3DQ7Z6J8 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.92□□□□□ -2.26
UBE3DQ7Z6J8 AC103706.3-201ENST00000636297 85 ntBASIC0.92□□□□□ -2.26
UBE3DQ7Z6J8 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.92□□□□□ -2.26
UBE3DQ7Z6J8 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
UBE3DQ7Z6J8 RNU6-668P-201ENST00000364180 107 ntBASIC0.91□□□□□ -2.26
UBE3DQ7Z6J8 RNA5SP517-201ENST00000364724 117 ntBASIC0.91□□□□□ -2.26
UBE3DQ7Z6J8 SNORD118-201ENST00000363593 134 ntBASIC0.9□□□□□ -2.27
UBE3DQ7Z6J8 SNORD114-27-201ENST00000363766 70 ntBASIC0.9□□□□□ -2.27
UBE3DQ7Z6J8 Y_RNA.205-201ENST00000364128 113 ntBASIC0.9□□□□□ -2.27
UBE3DQ7Z6J8 SNORA40.8-201ENST00000411034 126 ntBASIC0.9□□□□□ -2.27
UBE3DQ7Z6J8 SNORD71-201ENST00000411292 86 ntBASIC0.9□□□□□ -2.27
UBE3DQ7Z6J8 MIR6767-201ENST00000637302 66 ntBASIC0.9□□□□□ -2.27
UBE3DQ7Z6J8 RNU6-990P-201ENST00000364385 104 ntBASIC0.89□□□□□ -2.27
UBE3DQ7Z6J8 RNU6-645P-201ENST00000364649 106 ntBASIC0.89□□□□□ -2.27
UBE3DQ7Z6J8 SNORA15B-2-201ENST00000384058 135 ntBASIC0.89□□□□□ -2.27
UBE3DQ7Z6J8 SNORA15B-1-201ENST00000384334 135 ntBASIC0.89□□□□□ -2.27
UBE3DQ7Z6J8 RNU6-1162P-201ENST00000384443 104 ntBASIC0.89□□□□□ -2.27
UBE3DQ7Z6J8 RNU6-982P-201ENST00000516216 102 ntBASIC0.89□□□□□ -2.27
UBE3DQ7Z6J8 SNORA40.17-201ENST00000517256 115 ntBASIC0.89□□□□□ -2.27
UBE3DQ7Z6J8 MIR96-201ENST00000362288 78 ntBASIC0.88□□□□□ -2.27
UBE3DQ7Z6J8 MIR4511-201ENST00000582784 87 ntBASIC0.88□□□□□ -2.27
UBE3DQ7Z6J8 AC211469.2-201ENST00000605461 205 ntBASIC0.88□□□□□ -2.27
UBE3DQ7Z6J8 MIR532-201ENST00000385025 91 ntBASIC0.87□□□□□ -2.27
UBE3DQ7Z6J8 uc_338.10-201ENST00000621872 182 ntBASIC0.87□□□□□ -2.27
UBE3DQ7Z6J8 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.87□□□□□ -2.27
UBE3DQ7Z6J8 RNU6-1187P-201ENST00000364771 110 ntBASIC0.86□□□□□ -2.27
UBE3DQ7Z6J8 SNORA63.6-201ENST00000364921 119 ntBASIC0.86□□□□□ -2.27
UBE3DQ7Z6J8 MIR521-2-201ENST00000384818 87 ntBASIC0.86□□□□□ -2.27
UBE3DQ7Z6J8 MIR652-201ENST00000385278 98 ntBASIC0.86□□□□□ -2.27
UBE3DQ7Z6J8 RNU6-863P-201ENST00000515989 104 ntBASIC0.86□□□□□ -2.27
UBE3DQ7Z6J8 RNA5SP102-201ENST00000516865 106 ntBASIC0.86□□□□□ -2.27
UBE3DQ7Z6J8 MIR3973-201ENST00000579824 107 ntBASIC0.86□□□□□ -2.27
UBE3DQ7Z6J8 SNORA70.25-201ENST00000612741 95 ntBASIC0.86□□□□□ -2.27
UBE3DQ7Z6J8 MIR373-201ENST00000362273 69 ntBASIC0.85□□□□□ -2.27
UBE3DQ7Z6J8 RNA5SP215-201ENST00000363440 122 ntBASIC0.85□□□□□ -2.27
UBE3DQ7Z6J8 Y_RNA.375-201ENST00000365625 101 ntBASIC0.85□□□□□ -2.27
UBE3DQ7Z6J8 RNY1P8-201ENST00000383970 114 ntBASIC0.85□□□□□ -2.27
UBE3DQ7Z6J8 SNORD2-201ENST00000459163 69 ntBASIC0.85□□□□□ -2.27
UBE3DQ7Z6J8 MIR4473-201ENST00000583731 91 ntBASIC0.85□□□□□ -2.27
UBE3DQ7Z6J8 RNU1-29P-201ENST00000606574 126 ntBASIC0.85□□□□□ -2.27
UBE3DQ7Z6J8 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.85□□□□□ -2.27
UBE3DQ7Z6J8 Y_RNA.125-201ENST00000363371 111 ntBASIC0.84□□□□□ -2.27
UBE3DQ7Z6J8 MIR518A1-201ENST00000385068 85 ntBASIC0.84□□□□□ -2.27
UBE3DQ7Z6J8 AC021146.9-201ENST00000512503 156 ntBASIC0.84□□□□□ -2.27
UBE3DQ7Z6J8 RNU6-542P-201ENST00000516405 103 ntBASIC0.84□□□□□ -2.27
UBE3DQ7Z6J8 SNORA2A-201ENST00000383885 135 ntBASIC0.83□□□□□ -2.28
UBE3DQ7Z6J8 Y_RNA.633-201ENST00000459107 95 ntBASIC0.83□□□□□ -2.28
UBE3DQ7Z6J8 ACA64.5-201ENST00000516207 127 ntBASIC0.83□□□□□ -2.28
UBE3DQ7Z6J8 RNA5SP147-201ENST00000516493 109 ntBASIC0.83□□□□□ -2.28
UBE3DQ7Z6J8 RNU6-656P-201ENST00000516785 107 ntBASIC0.83□□□□□ -2.28
UBE3DQ7Z6J8 MIR548AE1-201ENST00000583292 70 ntBASIC0.83□□□□□ -2.28
UBE3DQ7Z6J8 SNORA25.18-201ENST00000607153 114 ntBASIC0.83□□□□□ -2.28
UBE3DQ7Z6J8 RNU1-93P-201ENST00000364704 169 ntBASIC0.82□□□□□ -2.28
UBE3DQ7Z6J8 HMGN2P22-201ENST00000427588 175 ntBASIC0.82□□□□□ -2.28
UBE3DQ7Z6J8 AC244090.1-201ENST00000441884 93 ntBASIC0.82□□□□□ -2.28
UBE3DQ7Z6J8 AC069271.1-201ENST00000445577 156 ntBASIC0.82□□□□□ -2.28
UBE3DQ7Z6J8 RPL39P28-201ENST00000465655 155 ntBASIC0.82□□□□□ -2.28
UBE3DQ7Z6J8 MIR4698-201ENST00000577795 80 ntBASIC0.82□□□□□ -2.28
UBE3DQ7Z6J8 RNU6-669P-201ENST00000365575 107 ntBASIC0.81□□□□□ -2.28
UBE3DQ7Z6J8 PSMC1P5-201ENST00000512850 177 ntBASIC0.81□□□□□ -2.28
UBE3DQ7Z6J8 MIR4752-201ENST00000579672 72 ntBASIC0.81□□□□□ -2.28
UBE3DQ7Z6J8 MIR20A-201ENST00000362279 71 ntBASIC0.8□□□□□ -2.28
UBE3DQ7Z6J8 RNU6-302P-201ENST00000365249 107 ntBASIC0.8□□□□□ -2.28
UBE3DQ7Z6J8 MIR548E-201ENST00000408287 88 ntBASIC0.8□□□□□ -2.28
UBE3DQ7Z6J8 MIR1276-201ENST00000408707 83 ntBASIC0.8□□□□□ -2.28
UBE3DQ7Z6J8 MIR4653-201ENST00000585107 83 ntBASIC0.8□□□□□ -2.28
UBE3DQ7Z6J8 MIR6857-201ENST00000613267 93 ntBASIC0.8□□□□□ -2.28
UBE3DQ7Z6J8 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.79□□□□□ -2.28
UBE3DQ7Z6J8 AC098934.3-201ENST00000430450 190 ntBASIC0.79□□□□□ -2.28
UBE3DQ7Z6J8 RNU6-351P-201ENST00000516097 100 ntBASIC0.79□□□□□ -2.28
UBE3DQ7Z6J8 SNORD114-29-201ENST00000364819 70 ntBASIC0.78□□□□□ -2.28
UBE3DQ7Z6J8 RNU6-1089P-201ENST00000516473 104 ntBASIC0.78□□□□□ -2.28
UBE3DQ7Z6J8 RNU6-229P-201ENST00000516614 102 ntBASIC0.78□□□□□ -2.28
UBE3DQ7Z6J8 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.78□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 212.6 ms