Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SCARNA18B-201ENST00000458806 135 ntBASIC0.83□□□□□ -2.28
LIG3P49916 RNU6-752P-201ENST00000516376 102 ntBASIC0.83□□□□□ -2.28
LIG3P49916 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.82□□□□□ -2.28
LIG3P49916 AC069271.1-201ENST00000445577 156 ntBASIC0.82□□□□□ -2.28
LIG3P49916 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.82□□□□□ -2.28
LIG3P49916 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.82□□□□□ -2.28
LIG3P49916 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
LIG3P49916 RNU6-776P-201ENST00000364403 104 ntBASIC0.81□□□□□ -2.28
LIG3P49916 RNU6-1022P-201ENST00000365049 104 ntBASIC0.81□□□□□ -2.28
LIG3P49916 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.81□□□□□ -2.28
LIG3P49916 RNU6-351P-201ENST00000516097 100 ntBASIC0.81□□□□□ -2.28
LIG3P49916 RNU5B-6P-201ENST00000516765 68 ntBASIC0.81□□□□□ -2.28
LIG3P49916 MIR4752-201ENST00000579672 72 ntBASIC0.81□□□□□ -2.28
LIG3P49916 SNORA8.1-201ENST00000384250 140 ntBASIC0.8□□□□□ -2.28
LIG3P49916 CYP3A137P-201ENST00000562436 69 ntBASIC0.8□□□□□ -2.28
LIG3P49916 MIR5706-201ENST00000579841 80 ntBASIC0.8□□□□□ -2.28
LIG3P49916 SNORA70.25-201ENST00000612741 95 ntBASIC0.8□□□□□ -2.28
LIG3P49916 Y_RNA.788-201ENST00000622394 112 ntBASIC0.8□□□□□ -2.28
LIG3P49916 AL691482.2-201ENST00000457453 84 ntBASIC0.79□□□□□ -2.28
LIG3P49916 Y_RNA.681-201ENST00000516445 113 ntBASIC0.79□□□□□ -2.28
LIG3P49916 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.79□□□□□ -2.28
LIG3P49916 SNORD114-4-201ENST00000363962 75 ntBASIC0.78□□□□□ -2.28
LIG3P49916 RNU6-1296P-201ENST00000383879 107 ntBASIC0.78□□□□□ -2.28
LIG3P49916 RNU6-945P-201ENST00000383947 107 ntBASIC0.78□□□□□ -2.28
LIG3P49916 MIR598-201ENST00000384868 97 ntBASIC0.77□□□□□ -2.29
LIG3P49916 AC098934.3-201ENST00000430450 190 ntBASIC0.77□□□□□ -2.29
LIG3P49916 SNORD42B-201ENST00000458893 67 ntBASIC0.77□□□□□ -2.29
LIG3P49916 RNU4-54P-201ENST00000516428 129 ntBASIC0.77□□□□□ -2.29
LIG3P49916 AC018659.1-201ENST00000551083 169 ntBASIC0.77□□□□□ -2.29
LIG3P49916 MIR6866-201ENST00000638146 69 ntBASIC0.77□□□□□ -2.29
LIG3P49916 RNU6-330P-201ENST00000363015 107 ntBASIC0.76□□□□□ -2.29
LIG3P49916 SNORA2A-201ENST00000383885 135 ntBASIC0.76□□□□□ -2.29
LIG3P49916 Y_RNA.407-201ENST00000383986 113 ntBASIC0.76□□□□□ -2.29
LIG3P49916 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
LIG3P49916 MIR5000-201ENST00000577717 103 ntBASIC0.76□□□□□ -2.29
LIG3P49916 MIR3675-201ENST00000583661 73 ntBASIC0.76□□□□□ -2.29
LIG3P49916 MIR4473-201ENST00000583731 91 ntBASIC0.76□□□□□ -2.29
LIG3P49916 U7.6-201ENST00000610841 64 ntBASIC0.76□□□□□ -2.29
LIG3P49916 RNU6-70P-201ENST00000516438 60 ntBASIC0.75□□□□□ -2.29
LIG3P49916 RNA5SP480-201ENST00000516840 109 ntBASIC0.75□□□□□ -2.29
LIG3P49916 MIR3134-201ENST00000579433 74 ntBASIC0.75□□□□□ -2.29
LIG3P49916 RNU1-29P-201ENST00000606574 126 ntBASIC0.75□□□□□ -2.29
LIG3P49916 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.74□□□□□ -2.29
LIG3P49916 RNU6-1039P-201ENST00000383931 107 ntBASIC0.74□□□□□ -2.29
LIG3P49916 Y_RNA.423-201ENST00000384057 113 ntBASIC0.74□□□□□ -2.29
LIG3P49916 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.74□□□□□ -2.29
LIG3P49916 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.74□□□□□ -2.29
LIG3P49916 RNU6-229P-201ENST00000516614 102 ntBASIC0.74□□□□□ -2.29
LIG3P49916 MIR6509-201ENST00000614603 85 ntBASIC0.74□□□□□ -2.29
LIG3P49916 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.74□□□□□ -2.29
LIG3P49916 MIR6835-201ENST00000621552 64 ntBASIC0.74□□□□□ -2.29
LIG3P49916 MIR664A-201ENST00000626086 82 ntBASIC0.74□□□□□ -2.29
LIG3P49916 RNU6-411P-201ENST00000384451 107 ntBASIC0.73□□□□□ -2.29
LIG3P49916 RNU6-848P-201ENST00000515948 107 ntBASIC0.73□□□□□ -2.29
LIG3P49916 RNU6-863P-201ENST00000515989 104 ntBASIC0.73□□□□□ -2.29
LIG3P49916 RNU6-617P-201ENST00000516147 107 ntBASIC0.73□□□□□ -2.29
LIG3P49916 RNU6-473P-201ENST00000516164 107 ntBASIC0.73□□□□□ -2.29
LIG3P49916 RNU6-1049P-201ENST00000516414 107 ntBASIC0.73□□□□□ -2.29
LIG3P49916 Y_RNA.540-201ENST00000384638 111 ntBASIC0.72□□□□□ -2.29
LIG3P49916 Y_RNA.545-201ENST00000384652 105 ntBASIC0.72□□□□□ -2.29
LIG3P49916 MIR7-2-201ENST00000384970 110 ntBASIC0.72□□□□□ -2.29
LIG3P49916 RNA5SP121-201ENST00000516537 101 ntBASIC0.72□□□□□ -2.29
LIG3P49916 PVT1_3.1-201ENST00000620853 95 ntBASIC0.72□□□□□ -2.29
LIG3P49916 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.71□□□□□ -2.3
LIG3P49916 MIR508-201ENST00000384857 115 ntBASIC0.7□□□□□ -2.3
LIG3P49916 MIR4714-201ENST00000580728 77 ntBASIC0.7□□□□□ -2.3
LIG3P49916 uc_338.10-201ENST00000621872 182 ntBASIC0.7□□□□□ -2.3
LIG3P49916 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
LIG3P49916 Y_RNA.125-201ENST00000363371 111 ntBASIC0.69□□□□□ -2.3
LIG3P49916 SNORD114-26-201ENST00000363543 72 ntBASIC0.69□□□□□ -2.3
LIG3P49916 HMGN2P22-201ENST00000427588 175 ntBASIC0.69□□□□□ -2.3
LIG3P49916 MIR6755-201ENST00000619993 66 ntBASIC0.69□□□□□ -2.3
LIG3P49916 MIR548AE1-201ENST00000583292 70 ntBASIC0.68□□□□□ -2.3
LIG3P49916 RNU6-260P-201ENST00000384092 107 ntBASIC0.67□□□□□ -2.3
LIG3P49916 MIR203A-201ENST00000384836 110 ntBASIC0.67□□□□□ -2.3
LIG3P49916 MIR760-201ENST00000390220 80 ntBASIC0.67□□□□□ -2.3
LIG3P49916 RNU6-587P-201ENST00000391282 106 ntBASIC0.67□□□□□ -2.3
LIG3P49916 SCARNA17.3-201ENST00000516381 125 ntBASIC0.67□□□□□ -2.3
LIG3P49916 SNORD44.1-201ENST00000363202 61 ntBASIC0.66□□□□□ -2.3
LIG3P49916 Y_RNA.565-201ENST00000384719 101 ntBASIC0.66□□□□□ -2.3
LIG3P49916 MIR154-201ENST00000385243 84 ntBASIC0.66□□□□□ -2.3
LIG3P49916 MIR652-201ENST00000385278 98 ntBASIC0.66□□□□□ -2.3
LIG3P49916 MIR3657-201ENST00000584818 117 ntBASIC0.66□□□□□ -2.3
LIG3P49916 RNU6-1241P-201ENST00000384536 107 ntBASIC0.65□□□□□ -2.31
LIG3P49916 SNORA68.3-201ENST00000515906 83 ntBASIC0.65□□□□□ -2.31
LIG3P49916 RNA5SP436-201ENST00000516020 115 ntBASIC0.65□□□□□ -2.31
LIG3P49916 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.65□□□□□ -2.31
LIG3P49916 SNORA2.1-201ENST00000363089 137 ntBASIC0.64□□□□□ -2.31
LIG3P49916 SNORD45.1-201ENST00000363181 77 ntBASIC0.64□□□□□ -2.31
LIG3P49916 MIR8053-201ENST00000613344 75 ntBASIC0.64□□□□□ -2.31
LIG3P49916 RNU6-990P-201ENST00000364385 104 ntBASIC0.63□□□□□ -2.31
LIG3P49916 MIR216A-201ENST00000385063 110 ntBASIC0.63□□□□□ -2.31
LIG3P49916 MIR92A1-201ENST00000385233 78 ntBASIC0.63□□□□□ -2.31
LIG3P49916 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.63□□□□□ -2.31
LIG3P49916 RNU6-871P-201ENST00000516122 100 ntBASIC0.63□□□□□ -2.31
LIG3P49916 RNU6-523P-201ENST00000516304 54 ntBASIC0.63□□□□□ -2.31
LIG3P49916 RNU6-1015P-201ENST00000517121 99 ntBASIC0.63□□□□□ -2.31
LIG3P49916 uc_338.17-201ENST00000619633 179 ntBASIC0.63□□□□□ -2.31
LIG3P49916 RNA5SP128-201ENST00000365305 116 ntBASIC0.62□□□□□ -2.31
LIG3P49916 RNU6-604P-201ENST00000390917 100 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 270.6 ms