Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 uc_338.10-201ENST00000621872 182 ntBASIC0.12□□□□□ -2.39
HOXA1P49639 Y_RNA.73-201ENST00000362910 113 ntBASIC0.11□□□□□ -2.39
HOXA1P49639 SNORD114-9-201ENST00000364370 72 ntBASIC0.11□□□□□ -2.39
HOXA1P49639 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.11□□□□□ -2.39
HOXA1P49639 U3.27-201ENST00000391237 200 ntBASIC0.11□□□□□ -2.39
HOXA1P49639 MTATP6P29-201ENST00000415057 132 ntBASIC0.11□□□□□ -2.39
HOXA1P49639 RNU6-782P-201ENST00000516852 104 ntBASIC0.11□□□□□ -2.39
HOXA1P49639 MIR5582-201ENST00000579697 68 ntBASIC0.11□□□□□ -2.39
HOXA1P49639 RNU6-1298P-201ENST00000362456 101 ntBASIC0.1□□□□□ -2.39
HOXA1P49639 MIR7-2-201ENST00000384970 110 ntBASIC0.1□□□□□ -2.39
HOXA1P49639 RNA5SP299-201ENST00000391203 116 ntBASIC0.1□□□□□ -2.39
HOXA1P49639 Y_RNA.611-201ENST00000410682 108 ntBASIC0.1□□□□□ -2.39
HOXA1P49639 MIR8087-201ENST00000612745 78 ntBASIC0.1□□□□□ -2.39
HOXA1P49639 RN7SL660P-201ENST00000614852 299 ntBASIC0.1□□□□□ -2.39
HOXA1P49639 SNORA42.1-201ENST00000363515 137 ntBASIC0.09□□□□□ -2.4
HOXA1P49639 MIR216B-201ENST00000390186 82 ntBASIC0.09□□□□□ -2.4
HOXA1P49639 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.09□□□□□ -2.4
HOXA1P49639 MIR6779-201ENST00000617283 64 ntBASIC0.09□□□□□ -2.4
HOXA1P49639 MIR548BB-201ENST00000626714 66 ntBASIC0.09□□□□□ -2.4
HOXA1P49639 MIR330-201ENST00000362196 94 ntBASIC0.08□□□□□ -2.4
HOXA1P49639 RNU6-652P-201ENST00000365488 107 ntBASIC0.08□□□□□ -2.4
HOXA1P49639 Y_RNA.540-201ENST00000384638 111 ntBASIC0.08□□□□□ -2.4
HOXA1P49639 MIR145-201ENST00000384967 88 ntBASIC0.08□□□□□ -2.4
HOXA1P49639 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.08□□□□□ -2.4
HOXA1P49639 RNU6-1177P-201ENST00000391058 104 ntBASIC0.08□□□□□ -2.4
HOXA1P49639 RNA5SP163-201ENST00000410304 99 ntBASIC0.08□□□□□ -2.4
HOXA1P49639 AC097510.1-201ENST00000510945 133 ntBASIC0.08□□□□□ -2.4
HOXA1P49639 AC023932.2-201ENST00000603176 175 ntBASIC0.08□□□□□ -2.4
HOXA1P49639 RNU5F-1-201ENST00000362507 117 ntBASIC0.07□□□□□ -2.4
HOXA1P49639 RNU6-824P-201ENST00000363724 104 ntBASIC0.07□□□□□ -2.4
HOXA1P49639 RNY4P3-201ENST00000365254 95 ntBASIC0.07□□□□□ -2.4
HOXA1P49639 RNU6-497P-201ENST00000365316 104 ntBASIC0.07□□□□□ -2.4
HOXA1P49639 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.07□□□□□ -2.4
HOXA1P49639 Y_RNA.694-201ENST00000516677 117 ntBASIC0.07□□□□□ -2.4
HOXA1P49639 RNU6-161P-201ENST00000363051 106 ntBASIC0.06□□□□□ -2.4
HOXA1P49639 RNU6-294P-201ENST00000364999 102 ntBASIC0.06□□□□□ -2.4
HOXA1P49639 RNU6-382P-201ENST00000365181 106 ntBASIC0.06□□□□□ -2.4
HOXA1P49639 MIR582-201ENST00000365731 98 ntBASIC0.06□□□□□ -2.4
HOXA1P49639 RNU6-675P-201ENST00000384236 104 ntBASIC0.06□□□□□ -2.4
HOXA1P49639 MIR610-201ENST00000385139 96 ntBASIC0.06□□□□□ -2.4
HOXA1P49639 RNA5SP170-201ENST00000517150 101 ntBASIC0.06□□□□□ -2.4
HOXA1P49639 MIR4773-1-201ENST00000637203 78 ntBASIC0.06□□□□□ -2.4
HOXA1P49639 RNU6-495P-201ENST00000362995 107 ntBASIC0.05□□□□□ -2.4
HOXA1P49639 SNORD115-37-201ENST00000363768 82 ntBASIC0.05□□□□□ -2.4
HOXA1P49639 MIR876-201ENST00000401147 81 ntBASIC0.05□□□□□ -2.4
HOXA1P49639 MIR1197-201ENST00000408818 88 ntBASIC0.05□□□□□ -2.4
HOXA1P49639 AC093729.1-201ENST00000513074 128 ntBASIC0.05□□□□□ -2.4
HOXA1P49639 RNU6-1108P-201ENST00000516308 104 ntBASIC0.05□□□□□ -2.4
HOXA1P49639 RNU6-175P-201ENST00000516896 107 ntBASIC0.05□□□□□ -2.4
HOXA1P49639 MIR6514-201ENST00000622549 70 ntBASIC0.05□□□□□ -2.4
HOXA1P49639 MIR494-201ENST00000349529 81 ntBASIC0.04□□□□□ -2.4
HOXA1P49639 Y_RNA.115-201ENST00000363272 98 ntBASIC0.04□□□□□ -2.4
HOXA1P49639 RNU6-990P-201ENST00000364385 104 ntBASIC0.04□□□□□ -2.4
HOXA1P49639 RNU6-929P-201ENST00000384429 107 ntBASIC0.04□□□□□ -2.4
HOXA1P49639 SNORA75.1-201ENST00000391130 148 ntBASIC0.04□□□□□ -2.4
HOXA1P49639 RNA5SP63-201ENST00000391225 112 ntBASIC0.04□□□□□ -2.4
HOXA1P49639 RNA5SP330-201ENST00000517096 96 ntBASIC0.04□□□□□ -2.4
HOXA1P49639 RNY1P1-201ENST00000364372 112 ntBASIC0.03□□□□□ -2.4
HOXA1P49639 SNORA49-201ENST00000386157 136 ntBASIC0.03□□□□□ -2.4
HOXA1P49639 AL450471.1-201ENST00000447509 127 ntBASIC0.03□□□□□ -2.4
HOXA1P49639 SCARNA17.3-201ENST00000516381 125 ntBASIC0.03□□□□□ -2.4
HOXA1P49639 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.03□□□□□ -2.4
HOXA1P49639 IGLL4P-201ENST00000614590 133 ntBASIC0.03□□□□□ -2.4
HOXA1P49639 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.03□□□□□ -2.4
HOXA1P49639 SNORD114-29-201ENST00000364819 70 ntBASIC0.02□□□□□ -2.41
HOXA1P49639 Y_RNA.371-201ENST00000365591 113 ntBASIC0.02□□□□□ -2.41
HOXA1P49639 AC140658.3-201ENST00000567603 271 ntBASIC0.02□□□□□ -2.41
HOXA1P49639 MIR4768-201ENST00000585270 74 ntBASIC0.02□□□□□ -2.41
HOXA1P49639 AC006160.2-201ENST00000637708 154 ntBASIC0.02□□□□□ -2.41
HOXA1P49639 RNU6-208P-201ENST00000362431 107 ntBASIC0.01□□□□□ -2.41
HOXA1P49639 Y_RNA.369-201ENST00000365568 117 ntBASIC0.01□□□□□ -2.41
HOXA1P49639 MIR203A-201ENST00000384836 110 ntBASIC0.01□□□□□ -2.41
HOXA1P49639 SNORD75.2-201ENST00000408784 58 ntBASIC0.01□□□□□ -2.41
HOXA1P49639 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.01□□□□□ -2.41
HOXA1P49639 SNORA40.17-201ENST00000517256 115 ntBASIC0.01□□□□□ -2.41
HOXA1P49639 AC145423.2-201ENST00000610631 239 ntBASIC0.01□□□□□ -2.41
HOXA1P49639 RNU6-1036P-201ENST00000383959 104 ntBASIC0□□□□□ -2.41
HOXA1P49639 MIR548E-201ENST00000408287 88 ntBASIC0□□□□□ -2.41
HOXA1P49639 MIR4290-201ENST00000583807 95 ntBASIC0□□□□□ -2.41
HOXA1P49639 MIR6718-201ENST00000616153 80 ntBASIC0□□□□□ -2.41
HOXA1P49639 MIR20A-201ENST00000362279 71 ntBASIC-0.01□□□□□ -2.41
HOXA1P49639 SNORD114-16-201ENST00000363044 70 ntBASIC-0.01□□□□□ -2.41
HOXA1P49639 SNORD77.2-201ENST00000391045 68 ntBASIC-0.01□□□□□ -2.41
HOXA1P49639 AC244250.2-201ENST00000418731 148 ntBASIC-0.01□□□□□ -2.41
HOXA1P49639 snoU13.13-201ENST00000458842 104 ntBASIC-0.01□□□□□ -2.41
HOXA1P49639 RNU7-159P-201ENST00000459284 62 ntBASIC-0.01□□□□□ -2.41
HOXA1P49639 AL109933.3-201ENST00000619095 188 ntBASIC-0.01□□□□□ -2.41
HOXA1P49639 MIR371B-201ENST00000638082 66 ntBASIC-0.01□□□□□ -2.41
HOXA1P49639 RNA5SP457-201ENST00000363657 124 ntBASIC-0.02□□□□□ -2.41
HOXA1P49639 AC022137.1-201ENST00000483735 151 ntBASIC-0.02□□□□□ -2.41
HOXA1P49639 RNU6-180P-201ENST00000516697 61 ntBASIC-0.02□□□□□ -2.41
HOXA1P49639 MIR4667-201ENST00000578933 66 ntBASIC-0.02□□□□□ -2.41
HOXA1P49639 MIR5588-201ENST00000581890 63 ntBASIC-0.02□□□□□ -2.41
HOXA1P49639 U6.81-201ENST00000612550 106 ntBASIC-0.02□□□□□ -2.41
HOXA1P49639 MIR6507-201ENST00000613630 70 ntBASIC-0.02□□□□□ -2.41
HOXA1P49639 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC-0.02□□□□□ -2.41
HOXA1P49639 RNU6-624P-201ENST00000363411 107 ntBASIC-0.03□□□□□ -2.41
HOXA1P49639 RNU6-478P-201ENST00000363904 110 ntBASIC-0.03□□□□□ -2.41
HOXA1P49639 MIR892B-201ENST00000401279 77 ntBASIC-0.03□□□□□ -2.41
HOXA1P49639 RNU7-165P-201ENST00000458864 60 ntBASIC-0.03□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 172.6 ms