Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 RNA5SP134-201ENST00000516492 96 ntBASIC0.47□□□□□ -2.33
ERCC3P19447 uc_338.10-201ENST00000621872 182 ntBASIC0.47□□□□□ -2.33
ERCC3P19447 RNU6-1327P-201ENST00000365302 105 ntBASIC0.46□□□□□ -2.34
ERCC3P19447 RNU6-54P-201ENST00000365563 107 ntBASIC0.46□□□□□ -2.34
ERCC3P19447 Y_RNA.681-201ENST00000516445 113 ntBASIC0.46□□□□□ -2.34
ERCC3P19447 RNA5SP257-201ENST00000363023 116 ntBASIC0.45□□□□□ -2.34
ERCC3P19447 HMGN2P22-201ENST00000427588 175 ntBASIC0.45□□□□□ -2.34
ERCC3P19447 AL450471.1-201ENST00000447509 127 ntBASIC0.45□□□□□ -2.34
ERCC3P19447 SNORA62.5-201ENST00000516634 120 ntBASIC0.45□□□□□ -2.34
ERCC3P19447 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
ERCC3P19447 AC069113.3-201ENST00000521019 150 ntBASIC0.44□□□□□ -2.34
ERCC3P19447 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.44□□□□□ -2.34
ERCC3P19447 Y_RNA.125-201ENST00000363371 111 ntBASIC0.43□□□□□ -2.34
ERCC3P19447 RNU6-497P-201ENST00000365316 104 ntBASIC0.43□□□□□ -2.34
ERCC3P19447 Y_RNA.407-201ENST00000383986 113 ntBASIC0.43□□□□□ -2.34
ERCC3P19447 MIR516B1-201ENST00000385211 90 ntBASIC0.43□□□□□ -2.34
ERCC3P19447 MIR643-201ENST00000385267 97 ntBASIC0.43□□□□□ -2.34
ERCC3P19447 MIR501-201ENST00000390204 84 ntBASIC0.43□□□□□ -2.34
ERCC3P19447 RNU6-1177P-201ENST00000391058 104 ntBASIC0.43□□□□□ -2.34
ERCC3P19447 AC022137.1-201ENST00000483735 151 ntBASIC0.43□□□□□ -2.34
ERCC3P19447 AC006160.2-201ENST00000637708 154 ntBASIC0.43□□□□□ -2.34
ERCC3P19447 AC084368.1-201ENST00000620935 65 ntBASIC0.42□□□□□ -2.34
ERCC3P19447 Y_RNA.68-201ENST00000362881 102 ntBASIC0.41□□□□□ -2.34
ERCC3P19447 Y_RNA.426-201ENST00000384068 113 ntBASIC0.41□□□□□ -2.34
ERCC3P19447 Y_RNA.437-201ENST00000384113 113 ntBASIC0.41□□□□□ -2.34
ERCC3P19447 RNU6-242P-201ENST00000384359 107 ntBASIC0.41□□□□□ -2.34
ERCC3P19447 snoU13.17-201ENST00000458802 104 ntBASIC0.41□□□□□ -2.34
ERCC3P19447 RNU6-1108P-201ENST00000516308 104 ntBASIC0.41□□□□□ -2.34
ERCC3P19447 MIR4514-201ENST00000581410 57 ntBASIC0.41□□□□□ -2.34
ERCC3P19447 MIR2909-201ENST00000617113 69 ntBASIC0.4□□□□□ -2.35
ERCC3P19447 RNU6-208P-201ENST00000362431 107 ntBASIC0.39□□□□□ -2.35
ERCC3P19447 SNORD73B-201ENST00000364394 72 ntBASIC0.39□□□□□ -2.35
ERCC3P19447 RNU6-652P-201ENST00000365488 107 ntBASIC0.39□□□□□ -2.35
ERCC3P19447 MIR4677-201ENST00000584153 80 ntBASIC0.39□□□□□ -2.35
ERCC3P19447 MIR4773-1-201ENST00000637203 78 ntBASIC0.39□□□□□ -2.35
ERCC3P19447 RNU6-161P-201ENST00000363051 106 ntBASIC0.38□□□□□ -2.35
ERCC3P19447 Y_RNA.371-201ENST00000365591 113 ntBASIC0.38□□□□□ -2.35
ERCC3P19447 RNU6-154P-201ENST00000384306 106 ntBASIC0.38□□□□□ -2.35
ERCC3P19447 RNU6-127P-201ENST00000390897 107 ntBASIC0.38□□□□□ -2.35
ERCC3P19447 MIR5588-201ENST00000581890 63 ntBASIC0.38□□□□□ -2.35
ERCC3P19447 MIR548AE1-201ENST00000583292 70 ntBASIC0.38□□□□□ -2.35
ERCC3P19447 AC023932.2-201ENST00000603176 175 ntBASIC0.38□□□□□ -2.35
ERCC3P19447 SNORD77.2-201ENST00000391045 68 ntBASIC0.37□□□□□ -2.35
ERCC3P19447 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.36□□□□□ -2.35
ERCC3P19447 RNA5SP63-201ENST00000391225 112 ntBASIC0.36□□□□□ -2.35
ERCC3P19447 AC108740.1-201ENST00000498629 225 ntBASIC0.36□□□□□ -2.35
ERCC3P19447 AC140658.3-201ENST00000567603 271 ntBASIC0.36□□□□□ -2.35
ERCC3P19447 MIR548AD-201ENST00000584780 82 ntBASIC0.36□□□□□ -2.35
ERCC3P19447 SNORA24B-201ENST00000384176 131 ntBASIC0.35□□□□□ -2.35
ERCC3P19447 RNU6-820P-201ENST00000384273 107 ntBASIC0.35□□□□□ -2.35
ERCC3P19447 AC097510.1-201ENST00000510945 133 ntBASIC0.35□□□□□ -2.35
ERCC3P19447 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.35□□□□□ -2.35
ERCC3P19447 AC062037.1-201ENST00000605302 128 ntBASIC0.35□□□□□ -2.35
ERCC3P19447 MIR4315-1-201ENST00000636800 73 ntBASIC0.35□□□□□ -2.35
ERCC3P19447 MIR4315-2-201ENST00000640925 73 ntBASIC0.35□□□□□ -2.35
ERCC3P19447 SNORD114-4-201ENST00000363962 75 ntBASIC0.34□□□□□ -2.36
ERCC3P19447 Y_RNA.433-201ENST00000384089 102 ntBASIC0.33□□□□□ -2.36
ERCC3P19447 MIR652-201ENST00000385278 98 ntBASIC0.33□□□□□ -2.36
ERCC3P19447 Y_RNA.178-201ENST00000363832 102 ntBASIC0.32□□□□□ -2.36
ERCC3P19447 SNORA26.2-201ENST00000390922 122 ntBASIC0.32□□□□□ -2.36
ERCC3P19447 Y_RNA.607-201ENST00000410597 98 ntBASIC0.32□□□□□ -2.36
ERCC3P19447 SCARNA11.2-201ENST00000517183 154 ntBASIC0.32□□□□□ -2.36
ERCC3P19447 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.32□□□□□ -2.36
ERCC3P19447 SNORD42B-201ENST00000458893 67 ntBASIC0.31□□□□□ -2.36
ERCC3P19447 RNU6-824P-201ENST00000363724 104 ntBASIC0.3□□□□□ -2.36
ERCC3P19447 Y_RNA.264-201ENST00000364665 102 ntBASIC0.3□□□□□ -2.36
ERCC3P19447 RNU6-382P-201ENST00000365181 106 ntBASIC0.3□□□□□ -2.36
ERCC3P19447 RNU6-979P-201ENST00000383896 107 ntBASIC0.3□□□□□ -2.36
ERCC3P19447 MIR610-201ENST00000385139 96 ntBASIC0.3□□□□□ -2.36
ERCC3P19447 RNU6-274P-201ENST00000459566 107 ntBASIC0.3□□□□□ -2.36
ERCC3P19447 RNU7-188P-201ENST00000517063 64 ntBASIC0.3□□□□□ -2.36
ERCC3P19447 RNU6-495P-201ENST00000362995 107 ntBASIC0.29□□□□□ -2.36
ERCC3P19447 SNORD114-29-201ENST00000364819 70 ntBASIC0.29□□□□□ -2.36
ERCC3P19447 RNU6-1276P-201ENST00000365372 104 ntBASIC0.29□□□□□ -2.36
ERCC3P19447 SNORD75.2-201ENST00000408784 58 ntBASIC0.29□□□□□ -2.36
ERCC3P19447 MIR6718-201ENST00000616153 80 ntBASIC0.29□□□□□ -2.36
ERCC3P19447 Y_RNA.12-201ENST00000362393 112 ntBASIC0.28□□□□□ -2.36
ERCC3P19447 RNU6-129P-201ENST00000391022 107 ntBASIC0.28□□□□□ -2.36
ERCC3P19447 MIR3925-201ENST00000584674 77 ntBASIC0.28□□□□□ -2.36
ERCC3P19447 AC104408.1-201ENST00000605241 170 ntBASIC0.28□□□□□ -2.36
ERCC3P19447 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.28□□□□□ -2.36
ERCC3P19447 RNU6-624P-201ENST00000363411 107 ntBASIC0.27□□□□□ -2.37
ERCC3P19447 MIR593-201ENST00000384856 100 ntBASIC0.27□□□□□ -2.37
ERCC3P19447 SNORA75.1-201ENST00000391130 148 ntBASIC0.27□□□□□ -2.37
ERCC3P19447 RNU6-782P-201ENST00000516852 104 ntBASIC0.27□□□□□ -2.37
ERCC3P19447 MIR5093-201ENST00000583199 100 ntBASIC0.27□□□□□ -2.37
ERCC3P19447 AL691482.2-201ENST00000457453 84 ntBASIC0.26□□□□□ -2.37
ERCC3P19447 Y_RNA.660-201ENST00000516002 120 ntBASIC0.26□□□□□ -2.37
ERCC3P19447 SCARNA17.3-201ENST00000516381 125 ntBASIC0.26□□□□□ -2.37
ERCC3P19447 MIR4679-1-201ENST00000637619 75 ntBASIC0.26□□□□□ -2.37
ERCC3P19447 RNA5SP214-201ENST00000363378 118 ntBASIC0.25□□□□□ -2.37
ERCC3P19447 RNU6-681P-201ENST00000364012 104 ntBASIC0.25□□□□□ -2.37
ERCC3P19447 RNY4P29-201ENST00000410801 97 ntBASIC0.25□□□□□ -2.37
ERCC3P19447 RNA5SP395-201ENST00000516567 118 ntBASIC0.25□□□□□ -2.37
ERCC3P19447 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.25□□□□□ -2.37
ERCC3P19447 MIR20A-201ENST00000362279 71 ntBASIC0.23□□□□□ -2.37
ERCC3P19447 RNU6-380P-201ENST00000410207 107 ntBASIC0.23□□□□□ -2.37
ERCC3P19447 RNU6-592P-201ENST00000411333 103 ntBASIC0.23□□□□□ -2.37
ERCC3P19447 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.23□□□□□ -2.37
ERCC3P19447 RNU7-171P-201ENST00000459581 62 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 209.5 ms