Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNA5SP363-201ENST00000365072 115 ntBASIC1.65□□□□□ -2.15
LIMD1Q9UGP4 SNORD30.1-201ENST00000391309 70 ntBASIC1.65□□□□□ -2.15
LIMD1Q9UGP4 RNU4-45P-201ENST00000365469 141 ntBASIC1.64□□□□□ -2.15
LIMD1Q9UGP4 AC244098.3-201ENST00000424803 96 ntBASIC1.64□□□□□ -2.15
LIMD1Q9UGP4 RNA5SP47-201ENST00000517230 109 ntBASIC1.64□□□□□ -2.15
LIMD1Q9UGP4 MIR4421-201ENST00000578133 69 ntBASIC1.64□□□□□ -2.15
LIMD1Q9UGP4 MIR3612-201ENST00000579753 87 ntBASIC1.64□□□□□ -2.15
LIMD1Q9UGP4 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.64□□□□□ -2.15
LIMD1Q9UGP4 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.64□□□□□ -2.15
LIMD1Q9UGP4 RNU6-495P-201ENST00000362995 107 ntBASIC1.63□□□□□ -2.15
LIMD1Q9UGP4 Y_RNA.258-201ENST00000364613 105 ntBASIC1.63□□□□□ -2.15
LIMD1Q9UGP4 MIR618-201ENST00000385287 98 ntBASIC1.63□□□□□ -2.15
LIMD1Q9UGP4 AL691482.2-201ENST00000457453 84 ntBASIC1.63□□□□□ -2.15
LIMD1Q9UGP4 RNA5SP102-201ENST00000516865 106 ntBASIC1.63□□□□□ -2.15
LIMD1Q9UGP4 MIR3678-201ENST00000578455 94 ntBASIC1.63□□□□□ -2.15
LIMD1Q9UGP4 SNORD45.1-201ENST00000363181 77 ntBASIC1.62□□□□□ -2.15
LIMD1Q9UGP4 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
LIMD1Q9UGP4 RNU6-895P-201ENST00000384125 103 ntBASIC1.62□□□□□ -2.15
LIMD1Q9UGP4 RNU6-540P-201ENST00000384622 101 ntBASIC1.62□□□□□ -2.15
LIMD1Q9UGP4 MIR7-2-201ENST00000384970 110 ntBASIC1.62□□□□□ -2.15
LIMD1Q9UGP4 MIR517C-201ENST00000385103 95 ntBASIC1.62□□□□□ -2.15
LIMD1Q9UGP4 RNA5SP404-201ENST00000517118 132 ntBASIC1.62□□□□□ -2.15
LIMD1Q9UGP4 RNU6-663P-201ENST00000391105 106 ntBASIC1.61□□□□□ -2.15
LIMD1Q9UGP4 MIR1323-201ENST00000408090 73 ntBASIC1.61□□□□□ -2.15
LIMD1Q9UGP4 RNA5SP220-201ENST00000516298 104 ntBASIC1.61□□□□□ -2.15
LIMD1Q9UGP4 RNA5SP255-201ENST00000516370 107 ntBASIC1.61□□□□□ -2.15
LIMD1Q9UGP4 SCARNA16.5-201ENST00000517114 183 ntBASIC1.61□□□□□ -2.15
LIMD1Q9UGP4 MIR6734-201ENST00000621166 68 ntBASIC1.61□□□□□ -2.15
LIMD1Q9UGP4 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
LIMD1Q9UGP4 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.6□□□□□ -2.15
LIMD1Q9UGP4 RNU6-726P-201ENST00000364680 107 ntBASIC1.6□□□□□ -2.15
LIMD1Q9UGP4 SNORD114-22-201ENST00000365423 72 ntBASIC1.6□□□□□ -2.15
LIMD1Q9UGP4 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.6□□□□□ -2.15
LIMD1Q9UGP4 SNORA31.24-201ENST00000517232 57 ntBASIC1.59□□□□□ -2.15
LIMD1Q9UGP4 AL353770.2-201ENST00000620024 78 ntBASIC1.59□□□□□ -2.15
LIMD1Q9UGP4 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.58□□□□□ -2.16
LIMD1Q9UGP4 SNORD115-31-201ENST00000365318 82 ntBASIC1.58□□□□□ -2.16
LIMD1Q9UGP4 AC125388.1-201ENST00000459631 156 ntBASIC1.58□□□□□ -2.16
LIMD1Q9UGP4 U6.111-201ENST00000636093 83 ntBASIC1.58□□□□□ -2.16
LIMD1Q9UGP4 AC093423.1-201ENST00000440817 142 ntBASIC1.57□□□□□ -2.16
LIMD1Q9UGP4 MIR26B-201ENST00000362251 77 ntBASIC1.56□□□□□ -2.16
LIMD1Q9UGP4 RNU6-1039P-201ENST00000383931 107 ntBASIC1.56□□□□□ -2.16
LIMD1Q9UGP4 RNU6-881P-201ENST00000516813 102 ntBASIC1.56□□□□□ -2.16
LIMD1Q9UGP4 MIR4460-201ENST00000577862 86 ntBASIC1.56□□□□□ -2.16
LIMD1Q9UGP4 SNORA8.2-201ENST00000384372 139 ntBASIC1.55□□□□□ -2.16
LIMD1Q9UGP4 MT-TY-201ENST00000387409 66 ntBASIC1.55□□□□□ -2.16
LIMD1Q9UGP4 AL354695.1-201ENST00000427935 228 ntBASIC1.55□□□□□ -2.16
LIMD1Q9UGP4 SNORD115-22-201ENST00000364456 82 ntBASIC1.54□□□□□ -2.16
LIMD1Q9UGP4 RNU6-716P-201ENST00000365621 103 ntBASIC1.54□□□□□ -2.16
LIMD1Q9UGP4 RNU6V-201ENST00000384105 107 ntBASIC1.54□□□□□ -2.16
LIMD1Q9UGP4 MIR6509-201ENST00000614603 85 ntBASIC1.54□□□□□ -2.16
LIMD1Q9UGP4 RNU6-1335P-201ENST00000365426 107 ntBASIC1.53□□□□□ -2.16
LIMD1Q9UGP4 SNORD45A-201ENST00000384512 84 ntBASIC1.53□□□□□ -2.16
LIMD1Q9UGP4 Y_RNA.540-201ENST00000384638 111 ntBASIC1.53□□□□□ -2.16
LIMD1Q9UGP4 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
LIMD1Q9UGP4 RNU6-604P-201ENST00000390917 100 ntBASIC1.53□□□□□ -2.16
LIMD1Q9UGP4 MIR6828-201ENST00000636181 60 ntBASIC1.53□□□□□ -2.16
LIMD1Q9UGP4 SNORD114-4-201ENST00000363962 75 ntBASIC1.52□□□□□ -2.17
LIMD1Q9UGP4 RNU1-141P-201ENST00000364623 158 ntBASIC1.52□□□□□ -2.17
LIMD1Q9UGP4 RNU6-54P-201ENST00000365563 107 ntBASIC1.52□□□□□ -2.17
LIMD1Q9UGP4 RNU6-800P-201ENST00000384473 103 ntBASIC1.52□□□□□ -2.17
LIMD1Q9UGP4 SNORD99-201ENST00000408612 74 ntBASIC1.52□□□□□ -2.17
LIMD1Q9UGP4 AC011195.1-201ENST00000578177 177 ntBASIC1.52□□□□□ -2.17
LIMD1Q9UGP4 MIR96-201ENST00000362288 78 ntBASIC1.51□□□□□ -2.17
LIMD1Q9UGP4 MIR18A-201ENST00000362310 71 ntBASIC1.51□□□□□ -2.17
LIMD1Q9UGP4 Y_RNA.340-201ENST00000365330 92 ntBASIC1.51□□□□□ -2.17
LIMD1Q9UGP4 MIR1304-201ENST00000408243 91 ntBASIC1.51□□□□□ -2.17
LIMD1Q9UGP4 RNA5SP480-201ENST00000516840 109 ntBASIC1.51□□□□□ -2.17
LIMD1Q9UGP4 NAMPTP3-201ENST00000569273 224 ntBASIC1.51□□□□□ -2.17
LIMD1Q9UGP4 MIR6078-201ENST00000611069 100 ntBASIC1.51□□□□□ -2.17
LIMD1Q9UGP4 RNU6-1216P-201ENST00000362590 107 ntBASIC1.5□□□□□ -2.17
LIMD1Q9UGP4 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.5□□□□□ -2.17
LIMD1Q9UGP4 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.5□□□□□ -2.17
LIMD1Q9UGP4 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
LIMD1Q9UGP4 SNORD113.1-201ENST00000363280 73 ntBASIC1.49□□□□□ -2.17
LIMD1Q9UGP4 RNA5SP227-201ENST00000516184 113 ntBASIC1.49□□□□□ -2.17
LIMD1Q9UGP4 AC073869.9-201ENST00000641610 120 ntBASIC1.49□□□□□ -2.17
LIMD1Q9UGP4 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.48□□□□□ -2.17
LIMD1Q9UGP4 RNU6-269P-201ENST00000391077 97 ntBASIC1.48□□□□□ -2.17
LIMD1Q9UGP4 AL162376.1-201ENST00000624117 175 ntBASIC1.48□□□□□ -2.17
LIMD1Q9UGP4 AC069503.3-201ENST00000618674 145 ntBASIC1.47□□□□□ -2.17
LIMD1Q9UGP4 SNORA25.4-201ENST00000363666 124 ntBASIC1.46□□□□□ -2.18
LIMD1Q9UGP4 Y_RNA.386-201ENST00000383913 105 ntBASIC1.46□□□□□ -2.18
LIMD1Q9UGP4 RNU6-630P-201ENST00000391258 106 ntBASIC1.46□□□□□ -2.18
LIMD1Q9UGP4 RNU6-260P-201ENST00000384092 107 ntBASIC1.45□□□□□ -2.18
LIMD1Q9UGP4 RNU6-997P-201ENST00000384725 107 ntBASIC1.45□□□□□ -2.18
LIMD1Q9UGP4 MIR320A-201ENST00000385302 82 ntBASIC1.45□□□□□ -2.18
LIMD1Q9UGP4 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.45□□□□□ -2.18
LIMD1Q9UGP4 MTND4LP1-201ENST00000446263 157 ntBASIC1.45□□□□□ -2.18
LIMD1Q9UGP4 AC022709.1-201ENST00000615967 87 ntBASIC1.45□□□□□ -2.18
LIMD1Q9UGP4 MIR6515-201ENST00000619843 57 ntBASIC1.45□□□□□ -2.18
LIMD1Q9UGP4 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.44□□□□□ -2.18
LIMD1Q9UGP4 RNU6-471P-201ENST00000383944 106 ntBASIC1.44□□□□□ -2.18
LIMD1Q9UGP4 Y_RNA.443-201ENST00000384135 111 ntBASIC1.44□□□□□ -2.18
LIMD1Q9UGP4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.44□□□□□ -2.18
LIMD1Q9UGP4 RNA5SP268-201ENST00000516828 124 ntBASIC1.44□□□□□ -2.18
LIMD1Q9UGP4 MIR4661-201ENST00000582720 75 ntBASIC1.44□□□□□ -2.18
LIMD1Q9UGP4 RNU6-939P-201ENST00000384634 107 ntBASIC1.43□□□□□ -2.18
LIMD1Q9UGP4 MIR520E-201ENST00000384867 87 ntBASIC1.43□□□□□ -2.18
LIMD1Q9UGP4 SNORD42B-201ENST00000458893 67 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 284.9 ms