Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNU6-910P-201ENST00000390844 107 ntBASIC1.51□□□□□ -2.17
CCDC39Q9UFE4 RNU6-237P-201ENST00000515985 71 ntBASIC1.51□□□□□ -2.17
CCDC39Q9UFE4 SCARNA21.1-201ENST00000515996 128 ntBASIC1.51□□□□□ -2.17
CCDC39Q9UFE4 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.51□□□□□ -2.17
CCDC39Q9UFE4 RNU6V-201ENST00000384105 107 ntBASIC1.5□□□□□ -2.17
CCDC39Q9UFE4 MIR7-2-201ENST00000384970 110 ntBASIC1.5□□□□□ -2.17
CCDC39Q9UFE4 AL353997.5-201ENST00000618886 171 ntBASIC1.5□□□□□ -2.17
CCDC39Q9UFE4 AC067863.3-201ENST00000624172 122 ntBASIC1.5□□□□□ -2.17
CCDC39Q9UFE4 MIR26B-201ENST00000362251 77 ntBASIC1.49□□□□□ -2.17
CCDC39Q9UFE4 RNA5SP299-201ENST00000391203 116 ntBASIC1.49□□□□□ -2.17
CCDC39Q9UFE4 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.49□□□□□ -2.17
CCDC39Q9UFE4 SNORD79.1-201ENST00000516069 84 ntBASIC1.49□□□□□ -2.17
CCDC39Q9UFE4 SNORA40.17-201ENST00000517256 115 ntBASIC1.49□□□□□ -2.17
CCDC39Q9UFE4 RNU6-446P-201ENST00000362827 106 ntBASIC1.48□□□□□ -2.17
CCDC39Q9UFE4 SNORA17.3-201ENST00000391159 129 ntBASIC1.48□□□□□ -2.17
CCDC39Q9UFE4 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.48□□□□□ -2.17
CCDC39Q9UFE4 RNU6-656P-201ENST00000516785 107 ntBASIC1.48□□□□□ -2.17
CCDC39Q9UFE4 AL136317.1-201ENST00000612653 226 ntBASIC1.48□□□□□ -2.17
CCDC39Q9UFE4 SNORA2.1-201ENST00000363089 137 ntBASIC1.47□□□□□ -2.17
CCDC39Q9UFE4 RNA5SP215-201ENST00000363440 122 ntBASIC1.47□□□□□ -2.17
CCDC39Q9UFE4 RNU6-1335P-201ENST00000365426 107 ntBASIC1.47□□□□□ -2.17
CCDC39Q9UFE4 RNA5SP147-201ENST00000516493 109 ntBASIC1.47□□□□□ -2.17
CCDC39Q9UFE4 RMST_2.1-201ENST00000617263 136 ntBASIC1.47□□□□□ -2.17
CCDC39Q9UFE4 RNU6-990P-201ENST00000364385 104 ntBASIC1.46□□□□□ -2.18
CCDC39Q9UFE4 SNORA25.8-201ENST00000364831 128 ntBASIC1.46□□□□□ -2.18
CCDC39Q9UFE4 MIR1827-201ENST00000408549 66 ntBASIC1.46□□□□□ -2.18
CCDC39Q9UFE4 RNU4-62P-201ENST00000410125 130 ntBASIC1.46□□□□□ -2.18
CCDC39Q9UFE4 MIR644A-201ENST00000385262 94 ntBASIC1.45□□□□□ -2.18
CCDC39Q9UFE4 MIR4421-201ENST00000578133 69 ntBASIC1.45□□□□□ -2.18
CCDC39Q9UFE4 MIR4781-201ENST00000585250 76 ntBASIC1.45□□□□□ -2.18
CCDC39Q9UFE4 MIR6739-201ENST00000622461 75 ntBASIC1.45□□□□□ -2.18
CCDC39Q9UFE4 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
CCDC39Q9UFE4 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
CCDC39Q9UFE4 RNA5SP327-201ENST00000362494 101 ntBASIC1.44□□□□□ -2.18
CCDC39Q9UFE4 SNORD41.1-201ENST00000391000 69 ntBASIC1.44□□□□□ -2.18
CCDC39Q9UFE4 RNU6-482P-201ENST00000391068 107 ntBASIC1.44□□□□□ -2.18
CCDC39Q9UFE4 RNU7-74P-201ENST00000459104 62 ntBASIC1.44□□□□□ -2.18
CCDC39Q9UFE4 RNU6-1089P-201ENST00000516473 104 ntBASIC1.44□□□□□ -2.18
CCDC39Q9UFE4 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.44□□□□□ -2.18
CCDC39Q9UFE4 MIR7978-201ENST00000636158 59 ntBASIC1.44□□□□□ -2.18
CCDC39Q9UFE4 MT-TY-201ENST00000387409 66 ntBASIC1.43□□□□□ -2.18
CCDC39Q9UFE4 AC002350.1-201ENST00000490759 375 ntBASIC1.43□□□□□ -2.18
CCDC39Q9UFE4 RNU6-122P-201ENST00000516818 107 ntBASIC1.43□□□□□ -2.18
CCDC39Q9UFE4 RNA5SP117-201ENST00000365294 118 ntBASIC1.42□□□□□ -2.18
CCDC39Q9UFE4 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.42□□□□□ -2.18
CCDC39Q9UFE4 RNU7-95P-201ENST00000459222 64 ntBASIC1.42□□□□□ -2.18
CCDC39Q9UFE4 Y_RNA.722-201ENST00000517279 114 ntBASIC1.42□□□□□ -2.18
CCDC39Q9UFE4 AC244669.1-204ENST00000621564 178 ntBASIC1.42□□□□□ -2.18
CCDC39Q9UFE4 SNORA7.1-201ENST00000363750 139 ntBASIC1.41□□□□□ -2.18
CCDC39Q9UFE4 SNORD28-201ENST00000384706 75 ntBASIC1.41□□□□□ -2.18
CCDC39Q9UFE4 SNORA75.1-201ENST00000391130 148 ntBASIC1.41□□□□□ -2.18
CCDC39Q9UFE4 MIR1285-1-201ENST00000408593 84 ntBASIC1.41□□□□□ -2.18
CCDC39Q9UFE4 AC108667.1-201ENST00000428618 249 ntBASIC1.41□□□□□ -2.18
CCDC39Q9UFE4 SNORA70.22-201ENST00000517160 124 ntBASIC1.41□□□□□ -2.18
CCDC39Q9UFE4 MIR4460-201ENST00000577862 86 ntBASIC1.41□□□□□ -2.18
CCDC39Q9UFE4 MIR3938-201ENST00000582157 103 ntBASIC1.41□□□□□ -2.18
CCDC39Q9UFE4 MIR3660-201ENST00000584845 100 ntBASIC1.41□□□□□ -2.18
CCDC39Q9UFE4 MIR4639-201ENST00000584938 69 ntBASIC1.41□□□□□ -2.18
CCDC39Q9UFE4 RNU6-92P-201ENST00000605893 104 ntBASIC1.41□□□□□ -2.18
CCDC39Q9UFE4 SNORD113-4-201ENST00000364802 75 ntBASIC1.4□□□□□ -2.19
CCDC39Q9UFE4 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.4□□□□□ -2.19
CCDC39Q9UFE4 RNU6-135P-201ENST00000516769 101 ntBASIC1.4□□□□□ -2.19
CCDC39Q9UFE4 MIR548V-201ENST00000584165 80 ntBASIC1.4□□□□□ -2.19
CCDC39Q9UFE4 RNU6-302P-201ENST00000365249 107 ntBASIC1.39□□□□□ -2.19
CCDC39Q9UFE4 MIR222-201ENST00000384992 110 ntBASIC1.39□□□□□ -2.19
CCDC39Q9UFE4 RNA5SP458-201ENST00000516188 119 ntBASIC1.39□□□□□ -2.19
CCDC39Q9UFE4 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.39□□□□□ -2.19
CCDC39Q9UFE4 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.38□□□□□ -2.19
CCDC39Q9UFE4 RNU6-726P-201ENST00000364680 107 ntBASIC1.38□□□□□ -2.19
CCDC39Q9UFE4 SNORA25-201ENST00000384384 134 ntBASIC1.38□□□□□ -2.19
CCDC39Q9UFE4 MIR548L-201ENST00000408303 86 ntBASIC1.38□□□□□ -2.19
CCDC39Q9UFE4 AL157398.1-201ENST00000452981 186 ntBASIC1.38□□□□□ -2.19
CCDC39Q9UFE4 AC018659.1-201ENST00000551083 169 ntBASIC1.38□□□□□ -2.19
CCDC39Q9UFE4 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
CCDC39Q9UFE4 SNORD60.1-201ENST00000362451 73 ntBASIC1.37□□□□□ -2.19
CCDC39Q9UFE4 RNU1-141P-201ENST00000364623 158 ntBASIC1.37□□□□□ -2.19
CCDC39Q9UFE4 MIR618-201ENST00000385287 98 ntBASIC1.37□□□□□ -2.19
CCDC39Q9UFE4 SNORD12-201ENST00000391002 90 ntBASIC1.37□□□□□ -2.19
CCDC39Q9UFE4 RNU6-469P-201ENST00000516253 101 ntBASIC1.37□□□□□ -2.19
CCDC39Q9UFE4 AL353770.2-201ENST00000620024 78 ntBASIC1.37□□□□□ -2.19
CCDC39Q9UFE4 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.36□□□□□ -2.19
CCDC39Q9UFE4 Y_RNA.250-201ENST00000364542 110 ntBASIC1.36□□□□□ -2.19
CCDC39Q9UFE4 RNU6-936P-201ENST00000384005 107 ntBASIC1.36□□□□□ -2.19
CCDC39Q9UFE4 RNU6-1162P-201ENST00000384443 104 ntBASIC1.36□□□□□ -2.19
CCDC39Q9UFE4 RNU6-939P-201ENST00000384634 107 ntBASIC1.36□□□□□ -2.19
CCDC39Q9UFE4 MIR521-2-201ENST00000384818 87 ntBASIC1.36□□□□□ -2.19
CCDC39Q9UFE4 RNU6-808P-201ENST00000391233 108 ntBASIC1.36□□□□□ -2.19
CCDC39Q9UFE4 AC002429.1-201ENST00000437672 148 ntBASIC1.36□□□□□ -2.19
CCDC39Q9UFE4 snoU13.13-201ENST00000458842 104 ntBASIC1.36□□□□□ -2.19
CCDC39Q9UFE4 RNU5B-6P-201ENST00000516765 68 ntBASIC1.36□□□□□ -2.19
CCDC39Q9UFE4 SNORD18A-201ENST00000363753 72 ntBASIC1.35□□□□□ -2.19
CCDC39Q9UFE4 MIR630-201ENST00000384957 97 ntBASIC1.35□□□□□ -2.19
CCDC39Q9UFE4 AP1B1P2-201ENST00000416196 106 ntBASIC1.35□□□□□ -2.19
CCDC39Q9UFE4 RNA5SP47-201ENST00000517230 109 ntBASIC1.35□□□□□ -2.19
CCDC39Q9UFE4 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.35□□□□□ -2.19
CCDC39Q9UFE4 MIR378A-201ENST00000362177 66 ntBASIC1.34□□□□□ -2.19
CCDC39Q9UFE4 SNORD114-4-201ENST00000363962 75 ntBASIC1.34□□□□□ -2.19
CCDC39Q9UFE4 RNU6-716P-201ENST00000365621 103 ntBASIC1.34□□□□□ -2.19
CCDC39Q9UFE4 MIR548C-201ENST00000384815 97 ntBASIC1.34□□□□□ -2.19
CCDC39Q9UFE4 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 220.7 ms