Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNA5SP499-201ENST00000363982 119 ntBASIC0.55□□□□□ -2.32
TRIM39Q9HCM9 RNY1P1-201ENST00000364372 112 ntBASIC0.55□□□□□ -2.32
TRIM39Q9HCM9 RNU6-675P-201ENST00000384236 104 ntBASIC0.55□□□□□ -2.32
TRIM39Q9HCM9 MIR92A1-201ENST00000385233 78 ntBASIC0.55□□□□□ -2.32
TRIM39Q9HCM9 RNA5SP484-201ENST00000458857 111 ntBASIC0.55□□□□□ -2.32
TRIM39Q9HCM9 FGF7P7-201ENST00000514120 227 ntBASIC0.55□□□□□ -2.32
TRIM39Q9HCM9 NAMPTP3-201ENST00000569273 224 ntBASIC0.55□□□□□ -2.32
TRIM39Q9HCM9 MIR6513-201ENST00000621188 64 ntBASIC0.55□□□□□ -2.32
TRIM39Q9HCM9 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.55□□□□□ -2.32
TRIM39Q9HCM9 RNA5SP347-201ENST00000362445 119 ntBASIC0.54□□□□□ -2.32
TRIM39Q9HCM9 RNU5F-1-201ENST00000362507 117 ntBASIC0.54□□□□□ -2.32
TRIM39Q9HCM9 SNORA63.2-201ENST00000362603 126 ntBASIC0.54□□□□□ -2.32
TRIM39Q9HCM9 Y_RNA.423-201ENST00000384057 113 ntBASIC0.54□□□□□ -2.32
TRIM39Q9HCM9 SNORD110-201ENST00000408189 75 ntBASIC0.54□□□□□ -2.32
TRIM39Q9HCM9 SNORA68.3-201ENST00000515906 83 ntBASIC0.54□□□□□ -2.32
TRIM39Q9HCM9 RNU6-229P-201ENST00000516614 102 ntBASIC0.54□□□□□ -2.32
TRIM39Q9HCM9 MIRLET7D-201ENST00000362263 87 ntBASIC0.53□□□□□ -2.32
TRIM39Q9HCM9 SNORD44.1-201ENST00000363202 61 ntBASIC0.53□□□□□ -2.32
TRIM39Q9HCM9 SNORD115-27-201ENST00000364430 82 ntBASIC0.53□□□□□ -2.32
TRIM39Q9HCM9 Y_RNA.593-201ENST00000410292 98 ntBASIC0.53□□□□□ -2.32
TRIM39Q9HCM9 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.53□□□□□ -2.32
TRIM39Q9HCM9 AL157398.1-201ENST00000452981 186 ntBASIC0.53□□□□□ -2.32
TRIM39Q9HCM9 MIR4752-201ENST00000579672 72 ntBASIC0.53□□□□□ -2.32
TRIM39Q9HCM9 AC069503.3-201ENST00000618674 145 ntBASIC0.53□□□□□ -2.32
TRIM39Q9HCM9 AC090625.1-201ENST00000357130 210 ntBASIC0.52□□□□□ -2.33
TRIM39Q9HCM9 RNU6-1051P-201ENST00000365471 102 ntBASIC0.52□□□□□ -2.33
TRIM39Q9HCM9 MIR450A2-201ENST00000385022 100 ntBASIC0.52□□□□□ -2.33
TRIM39Q9HCM9 AC093423.1-201ENST00000440817 142 ntBASIC0.52□□□□□ -2.33
TRIM39Q9HCM9 AC093729.1-201ENST00000513074 128 ntBASIC0.52□□□□□ -2.33
TRIM39Q9HCM9 MIR216A-201ENST00000385063 110 ntBASIC0.51□□□□□ -2.33
TRIM39Q9HCM9 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.51□□□□□ -2.33
TRIM39Q9HCM9 RNU6-267P-201ENST00000516714 103 ntBASIC0.51□□□□□ -2.33
TRIM39Q9HCM9 MT-TY-201ENST00000387409 66 ntBASIC0.5□□□□□ -2.33
TRIM39Q9HCM9 MIR936-201ENST00000401264 98 ntBASIC0.5□□□□□ -2.33
TRIM39Q9HCM9 Y_RNA.611-201ENST00000410682 108 ntBASIC0.5□□□□□ -2.33
TRIM39Q9HCM9 MIR548BB-201ENST00000626714 66 ntBASIC0.5□□□□□ -2.33
TRIM39Q9HCM9 RNU7-153P-201ENST00000516455 62 ntBASIC0.49□□□□□ -2.33
TRIM39Q9HCM9 SNORA70.25-201ENST00000612741 95 ntBASIC0.49□□□□□ -2.33
TRIM39Q9HCM9 Y_RNA.540-201ENST00000384638 111 ntBASIC0.48□□□□□ -2.33
TRIM39Q9HCM9 MIR760-201ENST00000390220 80 ntBASIC0.48□□□□□ -2.33
TRIM39Q9HCM9 RNU6-1052P-201ENST00000411398 104 ntBASIC0.48□□□□□ -2.33
TRIM39Q9HCM9 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.48□□□□□ -2.33
TRIM39Q9HCM9 RNU6-719P-201ENST00000516671 104 ntBASIC0.48□□□□□ -2.33
TRIM39Q9HCM9 RNA5SP480-201ENST00000516840 109 ntBASIC0.48□□□□□ -2.33
TRIM39Q9HCM9 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.48□□□□□ -2.33
TRIM39Q9HCM9 MIR548O2-201ENST00000616090 70 ntBASIC0.48□□□□□ -2.33
TRIM39Q9HCM9 Y_RNA.36-201ENST00000362602 112 ntBASIC0.47□□□□□ -2.33
TRIM39Q9HCM9 Y_RNA.426-201ENST00000384068 113 ntBASIC0.47□□□□□ -2.33
TRIM39Q9HCM9 AC114737.2-201ENST00000421583 173 ntBASIC0.47□□□□□ -2.33
TRIM39Q9HCM9 RN7SL793P-201ENST00000583259 296 ntBASIC0.47□□□□□ -2.33
TRIM39Q9HCM9 AC243829.3-201ENST00000622177 108 ntBASIC0.47□□□□□ -2.33
TRIM39Q9HCM9 SNORA9.1-201ENST00000362412 131 ntBASIC0.46□□□□□ -2.34
TRIM39Q9HCM9 RNU6-820P-201ENST00000384273 107 ntBASIC0.46□□□□□ -2.34
TRIM39Q9HCM9 SNORA25.13-201ENST00000516395 103 ntBASIC0.46□□□□□ -2.34
TRIM39Q9HCM9 YWHAEP2-201ENST00000580066 112 ntBASIC0.46□□□□□ -2.34
TRIM39Q9HCM9 MIR6755-201ENST00000619993 66 ntBASIC0.46□□□□□ -2.34
TRIM39Q9HCM9 MIR5087-201ENST00000635826 76 ntBASIC0.46□□□□□ -2.34
TRIM39Q9HCM9 MIR103A1-201ENST00000362165 78 ntBASIC0.45□□□□□ -2.34
TRIM39Q9HCM9 RNA5SP62-201ENST00000363457 110 ntBASIC0.45□□□□□ -2.34
TRIM39Q9HCM9 RNU6-1327P-201ENST00000365302 105 ntBASIC0.45□□□□□ -2.34
TRIM39Q9HCM9 RNU6-497P-201ENST00000365316 104 ntBASIC0.45□□□□□ -2.34
TRIM39Q9HCM9 RNU6-242P-201ENST00000384359 107 ntBASIC0.45□□□□□ -2.34
TRIM39Q9HCM9 AC073261.1-201ENST00000429409 121 ntBASIC0.45□□□□□ -2.34
TRIM39Q9HCM9 RNU7-129P-201ENST00000516128 62 ntBASIC0.45□□□□□ -2.34
TRIM39Q9HCM9 MIR4711-201ENST00000578274 70 ntBASIC0.45□□□□□ -2.34
TRIM39Q9HCM9 MIR3140-201ENST00000583685 90 ntBASIC0.45□□□□□ -2.34
TRIM39Q9HCM9 AC006160.2-201ENST00000637708 154 ntBASIC0.45□□□□□ -2.34
TRIM39Q9HCM9 RNA5SP128-201ENST00000365305 116 ntBASIC0.44□□□□□ -2.34
TRIM39Q9HCM9 RNU6V-201ENST00000384105 107 ntBASIC0.44□□□□□ -2.34
TRIM39Q9HCM9 SNORA50A-201ENST00000384225 134 ntBASIC0.44□□□□□ -2.34
TRIM39Q9HCM9 RNA5SP193-201ENST00000410353 107 ntBASIC0.44□□□□□ -2.34
TRIM39Q9HCM9 RNU1-29P-201ENST00000606574 126 ntBASIC0.44□□□□□ -2.34
TRIM39Q9HCM9 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.44□□□□□ -2.34
TRIM39Q9HCM9 MIR494-201ENST00000349529 81 ntBASIC0.43□□□□□ -2.34
TRIM39Q9HCM9 SNORD114-23-201ENST00000363536 72 ntBASIC0.43□□□□□ -2.34
TRIM39Q9HCM9 SNORD114-26-201ENST00000363543 72 ntBASIC0.43□□□□□ -2.34
TRIM39Q9HCM9 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.43□□□□□ -2.34
TRIM39Q9HCM9 AL450471.1-201ENST00000447509 127 ntBASIC0.42□□□□□ -2.34
TRIM39Q9HCM9 MIR5588-201ENST00000581890 63 ntBASIC0.42□□□□□ -2.34
TRIM39Q9HCM9 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.42□□□□□ -2.34
TRIM39Q9HCM9 Y_RNA.125-201ENST00000363371 111 ntBASIC0.41□□□□□ -2.34
TRIM39Q9HCM9 Y_RNA.407-201ENST00000383986 113 ntBASIC0.41□□□□□ -2.34
TRIM39Q9HCM9 RNU6-1177P-201ENST00000391058 104 ntBASIC0.41□□□□□ -2.34
TRIM39Q9HCM9 Y_RNA.607-201ENST00000410597 98 ntBASIC0.41□□□□□ -2.34
TRIM39Q9HCM9 AC140658.3-201ENST00000567603 271 ntBASIC0.41□□□□□ -2.34
TRIM39Q9HCM9 MIR4473-201ENST00000583731 91 ntBASIC0.41□□□□□ -2.34
TRIM39Q9HCM9 Y_RNA.73-201ENST00000362910 113 ntBASIC0.4□□□□□ -2.35
TRIM39Q9HCM9 SNORD114-4-201ENST00000363962 75 ntBASIC0.4□□□□□ -2.35
TRIM39Q9HCM9 Y_RNA.264-201ENST00000364665 102 ntBASIC0.4□□□□□ -2.35
TRIM39Q9HCM9 AC022137.1-201ENST00000483735 151 ntBASIC0.4□□□□□ -2.35
TRIM39Q9HCM9 AC097510.1-201ENST00000510945 133 ntBASIC0.4□□□□□ -2.35
TRIM39Q9HCM9 Y_RNA.660-201ENST00000516002 120 ntBASIC0.4□□□□□ -2.35
TRIM39Q9HCM9 RNU5B-6P-201ENST00000516765 68 ntBASIC0.4□□□□□ -2.35
TRIM39Q9HCM9 uc_338.10-201ENST00000621872 182 ntBASIC0.4□□□□□ -2.35
TRIM39Q9HCM9 MIR7-2-201ENST00000384970 110 ntBASIC0.39□□□□□ -2.35
TRIM39Q9HCM9 SNORD77.2-201ENST00000391045 68 ntBASIC0.39□□□□□ -2.35
TRIM39Q9HCM9 AC243829.6-201ENST00000612652 106 ntBASIC0.39□□□□□ -2.35
TRIM39Q9HCM9 RNU6-208P-201ENST00000362431 107 ntBASIC0.38□□□□□ -2.35
TRIM39Q9HCM9 Y_RNA.437-201ENST00000384113 113 ntBASIC0.38□□□□□ -2.35
TRIM39Q9HCM9 SNORA24B-201ENST00000384176 131 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 214.3 ms