Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 MIR3675-201ENST00000583661 73 ntBASIC1.3□□□□□ -2.2
ZKSCAN3Q9BRR0 AL078603.1-201ENST00000603824 313 ntBASIC1.3□□□□□ -2.2
ZKSCAN3Q9BRR0 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.3□□□□□ -2.2
ZKSCAN3Q9BRR0 MIR4773-1-201ENST00000637203 78 ntBASIC1.3□□□□□ -2.2
ZKSCAN3Q9BRR0 RNU6-752P-201ENST00000516376 102 ntBASIC1.29□□□□□ -2.2
ZKSCAN3Q9BRR0 Y_RNA.676-201ENST00000516393 96 ntBASIC1.29□□□□□ -2.2
ZKSCAN3Q9BRR0 MIR548O2-201ENST00000616090 70 ntBASIC1.29□□□□□ -2.2
ZKSCAN3Q9BRR0 Y_RNA.258-201ENST00000364613 105 ntBASIC1.28□□□□□ -2.2
ZKSCAN3Q9BRR0 RNU6-382P-201ENST00000365181 106 ntBASIC1.28□□□□□ -2.2
ZKSCAN3Q9BRR0 RNU6-939P-201ENST00000384634 107 ntBASIC1.28□□□□□ -2.2
ZKSCAN3Q9BRR0 RNU6-634P-201ENST00000459134 106 ntBASIC1.28□□□□□ -2.2
ZKSCAN3Q9BRR0 SCARNA16.5-201ENST00000517114 183 ntBASIC1.28□□□□□ -2.2
ZKSCAN3Q9BRR0 RNU6-726P-201ENST00000364680 107 ntBASIC1.27□□□□□ -2.21
ZKSCAN3Q9BRR0 RNU4-45P-201ENST00000365469 141 ntBASIC1.27□□□□□ -2.21
ZKSCAN3Q9BRR0 RNU6-1241P-201ENST00000384536 107 ntBASIC1.27□□□□□ -2.21
ZKSCAN3Q9BRR0 MIR154-201ENST00000385243 84 ntBASIC1.27□□□□□ -2.21
ZKSCAN3Q9BRR0 SNORD75.2-201ENST00000408784 58 ntBASIC1.27□□□□□ -2.21
ZKSCAN3Q9BRR0 RNU7-24P-201ENST00000458867 62 ntBASIC1.27□□□□□ -2.21
ZKSCAN3Q9BRR0 MIR4295-201ENST00000585286 85 ntBASIC1.27□□□□□ -2.21
ZKSCAN3Q9BRR0 SNORD114-21-201ENST00000606412 72 ntBASIC1.27□□□□□ -2.21
ZKSCAN3Q9BRR0 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.27□□□□□ -2.21
ZKSCAN3Q9BRR0 MIR337-201ENST00000362281 93 ntBASIC1.26□□□□□ -2.21
ZKSCAN3Q9BRR0 MIR96-201ENST00000362288 78 ntBASIC1.26□□□□□ -2.21
ZKSCAN3Q9BRR0 MIR1285-1-201ENST00000408593 84 ntBASIC1.26□□□□□ -2.21
ZKSCAN3Q9BRR0 SNORD99-201ENST00000408612 74 ntBASIC1.26□□□□□ -2.21
ZKSCAN3Q9BRR0 AC087343.1-201ENST00000477341 475 ntBASIC1.26□□□□□ -2.21
ZKSCAN3Q9BRR0 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.26□□□□□ -2.21
ZKSCAN3Q9BRR0 MIR8070-201ENST00000616510 88 ntBASIC1.26□□□□□ -2.21
ZKSCAN3Q9BRR0 AC011195.1-201ENST00000578177 177 ntBASIC1.25□□□□□ -2.21
ZKSCAN3Q9BRR0 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.25□□□□□ -2.21
ZKSCAN3Q9BRR0 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.25□□□□□ -2.21
ZKSCAN3Q9BRR0 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.24□□□□□ -2.21
ZKSCAN3Q9BRR0 RNU6-495P-201ENST00000362995 107 ntBASIC1.24□□□□□ -2.21
ZKSCAN3Q9BRR0 RNU6-716P-201ENST00000365621 103 ntBASIC1.24□□□□□ -2.21
ZKSCAN3Q9BRR0 AC244098.3-201ENST00000424803 96 ntBASIC1.24□□□□□ -2.21
ZKSCAN3Q9BRR0 RNU6-539P-201ENST00000516665 103 ntBASIC1.24□□□□□ -2.21
ZKSCAN3Q9BRR0 RNA5SP102-201ENST00000516865 106 ntBASIC1.24□□□□□ -2.21
ZKSCAN3Q9BRR0 MIR18A-201ENST00000362310 71 ntBASIC1.23□□□□□ -2.21
ZKSCAN3Q9BRR0 RNU6-788P-201ENST00000390967 104 ntBASIC1.23□□□□□ -2.21
ZKSCAN3Q9BRR0 AC093423.1-201ENST00000440817 142 ntBASIC1.23□□□□□ -2.21
ZKSCAN3Q9BRR0 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
ZKSCAN3Q9BRR0 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.22□□□□□ -2.21
ZKSCAN3Q9BRR0 MIR6828-201ENST00000636181 60 ntBASIC1.22□□□□□ -2.21
ZKSCAN3Q9BRR0 AL691482.2-201ENST00000457453 84 ntBASIC1.21□□□□□ -2.22
ZKSCAN3Q9BRR0 MIR4460-201ENST00000577862 86 ntBASIC1.21□□□□□ -2.22
ZKSCAN3Q9BRR0 MIR8053-201ENST00000613344 75 ntBASIC1.21□□□□□ -2.22
ZKSCAN3Q9BRR0 RNU6-590P-201ENST00000365039 107 ntBASIC1.2□□□□□ -2.22
ZKSCAN3Q9BRR0 RNU6-54P-201ENST00000365563 107 ntBASIC1.2□□□□□ -2.22
ZKSCAN3Q9BRR0 RNU6V-201ENST00000384105 107 ntBASIC1.2□□□□□ -2.22
ZKSCAN3Q9BRR0 SNORA8.2-201ENST00000384372 139 ntBASIC1.2□□□□□ -2.22
ZKSCAN3Q9BRR0 MT-TY-201ENST00000387409 66 ntBASIC1.2□□□□□ -2.22
ZKSCAN3Q9BRR0 MIR6767-201ENST00000637302 66 ntBASIC1.2□□□□□ -2.22
ZKSCAN3Q9BRR0 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
ZKSCAN3Q9BRR0 MIR1276-201ENST00000408707 83 ntBASIC1.19□□□□□ -2.22
ZKSCAN3Q9BRR0 RNA5SP227-201ENST00000516184 113 ntBASIC1.19□□□□□ -2.22
ZKSCAN3Q9BRR0 SNORD45.1-201ENST00000363181 77 ntBASIC1.18□□□□□ -2.22
ZKSCAN3Q9BRR0 RNU4-38P-201ENST00000364472 129 ntBASIC1.18□□□□□ -2.22
ZKSCAN3Q9BRR0 RNU1-141P-201ENST00000364623 158 ntBASIC1.18□□□□□ -2.22
ZKSCAN3Q9BRR0 RNU6-649P-201ENST00000384463 107 ntBASIC1.18□□□□□ -2.22
ZKSCAN3Q9BRR0 RNU6-269P-201ENST00000391077 97 ntBASIC1.18□□□□□ -2.22
ZKSCAN3Q9BRR0 NAMPTP3-201ENST00000569273 224 ntBASIC1.18□□□□□ -2.22
ZKSCAN3Q9BRR0 AL353765.1-201ENST00000605514 183 ntBASIC1.18□□□□□ -2.22
ZKSCAN3Q9BRR0 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.18□□□□□ -2.22
ZKSCAN3Q9BRR0 RNU6-1039P-201ENST00000383931 107 ntBASIC1.17□□□□□ -2.22
ZKSCAN3Q9BRR0 RNU6-540P-201ENST00000384622 101 ntBASIC1.17□□□□□ -2.22
ZKSCAN3Q9BRR0 MIR4661-201ENST00000582720 75 ntBASIC1.17□□□□□ -2.22
ZKSCAN3Q9BRR0 AL162376.1-201ENST00000624117 175 ntBASIC1.17□□□□□ -2.22
ZKSCAN3Q9BRR0 SNORD115-31-201ENST00000365318 82 ntBASIC1.16□□□□□ -2.22
ZKSCAN3Q9BRR0 SNORD30.1-201ENST00000391309 70 ntBASIC1.16□□□□□ -2.22
ZKSCAN3Q9BRR0 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.16□□□□□ -2.22
ZKSCAN3Q9BRR0 RNA5SP94-201ENST00000516917 108 ntBASIC1.16□□□□□ -2.22
ZKSCAN3Q9BRR0 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
ZKSCAN3Q9BRR0 SNORA36.1-201ENST00000363424 132 ntBASIC1.15□□□□□ -2.23
ZKSCAN3Q9BRR0 RNU6-604P-201ENST00000390917 100 ntBASIC1.15□□□□□ -2.23
ZKSCAN3Q9BRR0 RNA5SP247-201ENST00000411181 105 ntBASIC1.15□□□□□ -2.23
ZKSCAN3Q9BRR0 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.15□□□□□ -2.23
ZKSCAN3Q9BRR0 RNA5SP268-201ENST00000516828 124 ntBASIC1.15□□□□□ -2.23
ZKSCAN3Q9BRR0 MIR6509-201ENST00000614603 85 ntBASIC1.15□□□□□ -2.23
ZKSCAN3Q9BRR0 SNORD114-22-201ENST00000365423 72 ntBASIC1.14□□□□□ -2.23
ZKSCAN3Q9BRR0 RNU6-895P-201ENST00000384125 103 ntBASIC1.14□□□□□ -2.23
ZKSCAN3Q9BRR0 RNU6-663P-201ENST00000391105 106 ntBASIC1.14□□□□□ -2.23
ZKSCAN3Q9BRR0 RNA5SP222-201ENST00000411039 105 ntBASIC1.14□□□□□ -2.23
ZKSCAN3Q9BRR0 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.14□□□□□ -2.23
ZKSCAN3Q9BRR0 AC073869.9-201ENST00000641610 120 ntBASIC1.14□□□□□ -2.23
ZKSCAN3Q9BRR0 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.14□□□□□ -2.23
ZKSCAN3Q9BRR0 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.14□□□□□ -2.23
ZKSCAN3Q9BRR0 RNA5SP484-201ENST00000458857 111 ntBASIC1.13□□□□□ -2.23
ZKSCAN3Q9BRR0 AC069503.3-201ENST00000618674 145 ntBASIC1.13□□□□□ -2.23
ZKSCAN3Q9BRR0 SNORD115-22-201ENST00000364456 82 ntBASIC1.12□□□□□ -2.23
ZKSCAN3Q9BRR0 RNU1-93P-201ENST00000364704 169 ntBASIC1.12□□□□□ -2.23
ZKSCAN3Q9BRR0 SNORD45A-201ENST00000384512 84 ntBASIC1.12□□□□□ -2.23
ZKSCAN3Q9BRR0 SNORD42B-201ENST00000458893 67 ntBASIC1.12□□□□□ -2.23
ZKSCAN3Q9BRR0 OR2A41P-201ENST00000473586 105 ntBASIC1.12□□□□□ -2.23
ZKSCAN3Q9BRR0 RNU6-881P-201ENST00000516813 102 ntBASIC1.12□□□□□ -2.23
ZKSCAN3Q9BRR0 MIR4698-201ENST00000577795 80 ntBASIC1.11□□□□□ -2.23
ZKSCAN3Q9BRR0 MIR3973-201ENST00000579824 107 ntBASIC1.11□□□□□ -2.23
ZKSCAN3Q9BRR0 SNORD114-4-201ENST00000363962 75 ntBASIC1.1□□□□□ -2.23
ZKSCAN3Q9BRR0 Y_RNA.226-201ENST00000364337 114 ntBASIC1.1□□□□□ -2.23
ZKSCAN3Q9BRR0 MIR7107-201ENST00000611489 80 ntBASIC1.1□□□□□ -2.23
ZKSCAN3Q9BRR0 MIR6504-201ENST00000613520 61 ntBASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 176 ms