Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC025521.1-201ENST00000621624 286 ntBASIC-1.59□□□□□ -2.66
CCDC112Q8NEF3 AC090617.8-201ENST00000623339 167 ntBASIC-1.59□□□□□ -2.66
CCDC112Q8NEF3 SNORD50.2-201ENST00000365465 70 ntBASIC-1.6□□□□□ -2.67
CCDC112Q8NEF3 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.6□□□□□ -2.67
CCDC112Q8NEF3 RNU6-1219P-201ENST00000516143 112 ntBASIC-1.6□□□□□ -2.67
CCDC112Q8NEF3 AC130289.1-201ENST00000577321 73 ntBASIC-1.6□□□□□ -2.67
CCDC112Q8NEF3 U6.96-201ENST00000636425 70 ntBASIC-1.6□□□□□ -2.67
CCDC112Q8NEF3 SNORA63.2-201ENST00000362603 126 ntBASIC-1.61□□□□□ -2.67
CCDC112Q8NEF3 Y_RNA.344-201ENST00000365381 112 ntBASIC-1.61□□□□□ -2.67
CCDC112Q8NEF3 RNU6-639P-201ENST00000384074 107 ntBASIC-1.61□□□□□ -2.67
CCDC112Q8NEF3 Y_RNA.574-201ENST00000384766 95 ntBASIC-1.61□□□□□ -2.67
CCDC112Q8NEF3 RNA5SP136-201ENST00000410906 107 ntBASIC-1.61□□□□□ -2.67
CCDC112Q8NEF3 RNU7-85P-201ENST00000458851 63 ntBASIC-1.61□□□□□ -2.67
CCDC112Q8NEF3 RNU6-1271P-201ENST00000517049 105 ntBASIC-1.61□□□□□ -2.67
CCDC112Q8NEF3 MIR3140-201ENST00000583685 90 ntBASIC-1.61□□□□□ -2.67
CCDC112Q8NEF3 AL353803.5-201ENST00000599815 141 ntBASIC-1.61□□□□□ -2.67
CCDC112Q8NEF3 AL445584.3-201ENST00000617173 78 ntBASIC-1.61□□□□□ -2.67
CCDC112Q8NEF3 MIR6888-201ENST00000621977 67 ntBASIC-1.61□□□□□ -2.67
CCDC112Q8NEF3 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.61□□□□□ -2.67
CCDC112Q8NEF3 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.62□□□□□ -2.67
CCDC112Q8NEF3 Y_RNA.507-201ENST00000384500 99 ntBASIC-1.62□□□□□ -2.67
CCDC112Q8NEF3 RNU7-24P-201ENST00000458867 62 ntBASIC-1.62□□□□□ -2.67
CCDC112Q8NEF3 AC021146.9-201ENST00000512503 156 ntBASIC-1.62□□□□□ -2.67
CCDC112Q8NEF3 Y_RNA.20-201ENST00000362479 113 ntBASIC-1.63□□□□□ -2.67
CCDC112Q8NEF3 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.63□□□□□ -2.67
CCDC112Q8NEF3 RNU6-132P-201ENST00000383863 107 ntBASIC-1.63□□□□□ -2.67
CCDC112Q8NEF3 SNORA24B-201ENST00000384176 131 ntBASIC-1.63□□□□□ -2.67
CCDC112Q8NEF3 MIR1263-201ENST00000408324 86 ntBASIC-1.63□□□□□ -2.67
CCDC112Q8NEF3 U4.2-201ENST00000618561 85 ntBASIC-1.63□□□□□ -2.67
CCDC112Q8NEF3 RNA5SP461-201ENST00000516451 104 ntBASIC-1.64□□□□□ -2.67
CCDC112Q8NEF3 RNU7-197P-201ENST00000458836 62 ntBASIC-1.65□□□□□ -2.67
CCDC112Q8NEF3 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.66□□□□□ -2.68
CCDC112Q8NEF3 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.66□□□□□ -2.68
CCDC112Q8NEF3 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.66□□□□□ -2.68
CCDC112Q8NEF3 SNORD75.2-201ENST00000408784 58 ntBASIC-1.66□□□□□ -2.68
CCDC112Q8NEF3 AC068339.1-201ENST00000526965 141 ntBASIC-1.66□□□□□ -2.68
CCDC112Q8NEF3 Y_RNA.233-201ENST00000364407 101 ntBASIC-1.67□□□□□ -2.68
CCDC112Q8NEF3 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.67□□□□□ -2.68
CCDC112Q8NEF3 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.67□□□□□ -2.68
CCDC112Q8NEF3 RNU4-71P-201ENST00000516258 113 ntBASIC-1.67□□□□□ -2.68
CCDC112Q8NEF3 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.67□□□□□ -2.68
CCDC112Q8NEF3 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.67□□□□□ -2.68
CCDC112Q8NEF3 Y_RNA.163-201ENST00000363702 113 ntBASIC-1.68□□□□□ -2.68
CCDC112Q8NEF3 Y_RNA.288-201ENST00000364854 92 ntBASIC-1.68□□□□□ -2.68
CCDC112Q8NEF3 RNU6-915P-201ENST00000364943 103 ntBASIC-1.68□□□□□ -2.68
CCDC112Q8NEF3 Y_RNA.528-201ENST00000384575 108 ntBASIC-1.68□□□□□ -2.68
CCDC112Q8NEF3 MIR548A1-201ENST00000385041 97 ntBASIC-1.68□□□□□ -2.68
CCDC112Q8NEF3 RNU6-816P-201ENST00000390914 107 ntBASIC-1.68□□□□□ -2.68
CCDC112Q8NEF3 RNU6-1268P-201ENST00000391214 107 ntBASIC-1.68□□□□□ -2.68
CCDC112Q8NEF3 RNU6-1239P-201ENST00000391310 107 ntBASIC-1.68□□□□□ -2.68
CCDC112Q8NEF3 MIR548F4-201ENST00000408515 105 ntBASIC-1.68□□□□□ -2.68
CCDC112Q8NEF3 MTCYBP6-201ENST00000441810 138 ntBASIC-1.68□□□□□ -2.68
CCDC112Q8NEF3 RNU6-706P-201ENST00000517229 104 ntBASIC-1.68□□□□□ -2.68
CCDC112Q8NEF3 AL513043.2-201ENST00000573941 143 ntBASIC-1.68□□□□□ -2.68
CCDC112Q8NEF3 RNU6-1020P-201ENST00000363684 107 ntBASIC-1.69□□□□□ -2.68
CCDC112Q8NEF3 Y_RNA.535-201ENST00000384612 99 ntBASIC-1.69□□□□□ -2.68
CCDC112Q8NEF3 RNU6-479P-201ENST00000516348 105 ntBASIC-1.69□□□□□ -2.68
CCDC112Q8NEF3 MIR3064-201ENST00000581130 66 ntBASIC-1.69□□□□□ -2.68
CCDC112Q8NEF3 AC132825.6-201ENST00000638861 357 ntBASIC-1.69□□□□□ -2.68
CCDC112Q8NEF3 RNY4P6-201ENST00000363667 96 ntBASIC-1.7□□□□□ -2.68
CCDC112Q8NEF3 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.7□□□□□ -2.68
CCDC112Q8NEF3 RNU6-460P-201ENST00000391158 108 ntBASIC-1.7□□□□□ -2.68
CCDC112Q8NEF3 AC022559.1-201ENST00000520905 205 ntBASIC-1.7□□□□□ -2.68
CCDC112Q8NEF3 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.7□□□□□ -2.68
CCDC112Q8NEF3 RNU6-1130P-201ENST00000365434 107 ntBASIC-1.71□□□□□ -2.68
CCDC112Q8NEF3 MIR29B1-201ENST00000385015 81 ntBASIC-1.71□□□□□ -2.68
CCDC112Q8NEF3 MIR577-201ENST00000385196 96 ntBASIC-1.71□□□□□ -2.68
CCDC112Q8NEF3 MIR548U-201ENST00000390728 81 ntBASIC-1.71□□□□□ -2.68
CCDC112Q8NEF3 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.71□□□□□ -2.68
CCDC112Q8NEF3 RNU6-924P-201ENST00000362926 108 ntBASIC-1.72□□□□□ -2.68
CCDC112Q8NEF3 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.72□□□□□ -2.68
CCDC112Q8NEF3 RNU6-746P-201ENST00000384112 109 ntBASIC-1.72□□□□□ -2.68
CCDC112Q8NEF3 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.72□□□□□ -2.68
CCDC112Q8NEF3 Y_RNA.720-201ENST00000517166 92 ntBASIC-1.72□□□□□ -2.68
CCDC112Q8NEF3 MIR365A-201ENST00000362260 87 ntBASIC-1.73□□□□□ -2.69
CCDC112Q8NEF3 SNORD115-33-201ENST00000363723 82 ntBASIC-1.73□□□□□ -2.69
CCDC112Q8NEF3 RNU4-11P-201ENST00000365287 132 ntBASIC-1.73□□□□□ -2.69
CCDC112Q8NEF3 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.73□□□□□ -2.69
CCDC112Q8NEF3 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.73□□□□□ -2.69
CCDC112Q8NEF3 RNU6-260P-201ENST00000384092 107 ntBASIC-1.73□□□□□ -2.69
CCDC112Q8NEF3 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.73□□□□□ -2.69
CCDC112Q8NEF3 Y_RNA.478-201ENST00000384358 107 ntBASIC-1.73□□□□□ -2.69
CCDC112Q8NEF3 SNORA26.4-201ENST00000391188 123 ntBASIC-1.73□□□□□ -2.69
CCDC112Q8NEF3 snoU13.17-201ENST00000458802 104 ntBASIC-1.73□□□□□ -2.69
CCDC112Q8NEF3 SNORD63.1-201ENST00000516178 80 ntBASIC-1.73□□□□□ -2.69
CCDC112Q8NEF3 RNU6-781P-201ENST00000516377 101 ntBASIC-1.73□□□□□ -2.69
CCDC112Q8NEF3 AC104996.3-201ENST00000590718 94 ntBASIC-1.73□□□□□ -2.69
CCDC112Q8NEF3 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.74□□□□□ -2.69
CCDC112Q8NEF3 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.74□□□□□ -2.69
CCDC112Q8NEF3 RNU7-134P-201ENST00000458997 64 ntBASIC-1.74□□□□□ -2.69
CCDC112Q8NEF3 AC141273.2-201ENST00000618989 130 ntBASIC-1.74□□□□□ -2.69
CCDC112Q8NEF3 MIR6818-201ENST00000621576 65 ntBASIC-1.74□□□□□ -2.69
CCDC112Q8NEF3 Y_RNA.200-201ENST00000364018 102 ntBASIC-1.75□□□□□ -2.69
CCDC112Q8NEF3 SNORA33.1-201ENST00000364957 130 ntBASIC-1.75□□□□□ -2.69
CCDC112Q8NEF3 SNORD114-3-201ENST00000364969 75 ntBASIC-1.75□□□□□ -2.69
CCDC112Q8NEF3 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.75□□□□□ -2.69
CCDC112Q8NEF3 MIR1255B2-201ENST00000408618 67 ntBASIC-1.75□□□□□ -2.69
CCDC112Q8NEF3 SNORD4B-201ENST00000459083 72 ntBASIC-1.75□□□□□ -2.69
CCDC112Q8NEF3 MIR4694-201ENST00000578534 80 ntBASIC-1.75□□□□□ -2.69
CCDC112Q8NEF3 MIR4801-201ENST00000582704 82 ntBASIC-1.75□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 184.2 ms