Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 FGF7P7-201ENST00000514120 227 ntBASIC0.38□□□□□ -2.35
CLRN3Q8NCR9 MIR4796-201ENST00000580742 81 ntBASIC0.38□□□□□ -2.35
CLRN3Q8NCR9 MIR5087-201ENST00000635826 76 ntBASIC0.38□□□□□ -2.35
CLRN3Q8NCR9 Y_RNA.369-201ENST00000365568 117 ntBASIC0.37□□□□□ -2.35
CLRN3Q8NCR9 RNU7-129P-201ENST00000516128 62 ntBASIC0.37□□□□□ -2.35
CLRN3Q8NCR9 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.37□□□□□ -2.35
CLRN3Q8NCR9 RNA5SP170-201ENST00000517150 101 ntBASIC0.37□□□□□ -2.35
CLRN3Q8NCR9 MIR548O2-201ENST00000616090 70 ntBASIC0.37□□□□□ -2.35
CLRN3Q8NCR9 RNU6-219P-201ENST00000364728 107 ntBASIC0.36□□□□□ -2.35
CLRN3Q8NCR9 RNU6-1051P-201ENST00000365471 102 ntBASIC0.36□□□□□ -2.35
CLRN3Q8NCR9 SNORA50A-201ENST00000384225 134 ntBASIC0.36□□□□□ -2.35
CLRN3Q8NCR9 RNA5SP134-201ENST00000516492 96 ntBASIC0.36□□□□□ -2.35
CLRN3Q8NCR9 YWHAEP2-201ENST00000580066 112 ntBASIC0.36□□□□□ -2.35
CLRN3Q8NCR9 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.35□□□□□ -2.35
CLRN3Q8NCR9 RNU5F-1-201ENST00000362507 117 ntBASIC0.35□□□□□ -2.35
CLRN3Q8NCR9 Y_RNA.558-201ENST00000384685 113 ntBASIC0.35□□□□□ -2.35
CLRN3Q8NCR9 AC108740.1-201ENST00000498629 225 ntBASIC0.35□□□□□ -2.35
CLRN3Q8NCR9 AC069113.3-201ENST00000521019 150 ntBASIC0.35□□□□□ -2.35
CLRN3Q8NCR9 MIR5582-201ENST00000579697 68 ntBASIC0.35□□□□□ -2.35
CLRN3Q8NCR9 MIR4714-201ENST00000580728 77 ntBASIC0.35□□□□□ -2.35
CLRN3Q8NCR9 Y_RNA.125-201ENST00000363371 111 ntBASIC0.34□□□□□ -2.36
CLRN3Q8NCR9 RNU6-42P-201ENST00000384165 107 ntBASIC0.34□□□□□ -2.36
CLRN3Q8NCR9 MIR1287-201ENST00000408492 90 ntBASIC0.34□□□□□ -2.36
CLRN3Q8NCR9 AC114737.2-201ENST00000421583 173 ntBASIC0.34□□□□□ -2.36
CLRN3Q8NCR9 SNORD115-27-201ENST00000364430 82 ntBASIC0.33□□□□□ -2.36
CLRN3Q8NCR9 RNU6-815P-201ENST00000384080 113 ntBASIC0.33□□□□□ -2.36
CLRN3Q8NCR9 RNU6-675P-201ENST00000384236 104 ntBASIC0.33□□□□□ -2.36
CLRN3Q8NCR9 SNORA25.13-201ENST00000516395 103 ntBASIC0.33□□□□□ -2.36
CLRN3Q8NCR9 MIR4315-1-201ENST00000636800 73 ntBASIC0.33□□□□□ -2.36
CLRN3Q8NCR9 MIR4315-2-201ENST00000640925 73 ntBASIC0.33□□□□□ -2.36
CLRN3Q8NCR9 Y_RNA.17-201ENST00000362433 111 ntBASIC0.32□□□□□ -2.36
CLRN3Q8NCR9 Y_RNA.226-201ENST00000364337 114 ntBASIC0.32□□□□□ -2.36
CLRN3Q8NCR9 RNU6-294P-201ENST00000364999 102 ntBASIC0.32□□□□□ -2.36
CLRN3Q8NCR9 RNU6V-201ENST00000384105 107 ntBASIC0.32□□□□□ -2.36
CLRN3Q8NCR9 MIR501-201ENST00000390204 84 ntBASIC0.32□□□□□ -2.36
CLRN3Q8NCR9 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.32□□□□□ -2.36
CLRN3Q8NCR9 HMGN2P22-201ENST00000427588 175 ntBASIC0.32□□□□□ -2.36
CLRN3Q8NCR9 MIR548AD-201ENST00000584780 82 ntBASIC0.32□□□□□ -2.36
CLRN3Q8NCR9 MIR6734-201ENST00000621166 68 ntBASIC0.32□□□□□ -2.36
CLRN3Q8NCR9 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.31□□□□□ -2.36
CLRN3Q8NCR9 RNU6-1052P-201ENST00000411398 104 ntBASIC0.31□□□□□ -2.36
CLRN3Q8NCR9 RNU6-1232P-201ENST00000516299 86 ntBASIC0.31□□□□□ -2.36
CLRN3Q8NCR9 RNU6-719P-201ENST00000516671 104 ntBASIC0.31□□□□□ -2.36
CLRN3Q8NCR9 MIR4473-201ENST00000583731 91 ntBASIC0.31□□□□□ -2.36
CLRN3Q8NCR9 MIR6513-201ENST00000621188 64 ntBASIC0.31□□□□□ -2.36
CLRN3Q8NCR9 RNU6-1298P-201ENST00000362456 101 ntBASIC0.3□□□□□ -2.36
CLRN3Q8NCR9 RNU6-652P-201ENST00000365488 107 ntBASIC0.3□□□□□ -2.36
CLRN3Q8NCR9 Y_RNA.407-201ENST00000383986 113 ntBASIC0.3□□□□□ -2.36
CLRN3Q8NCR9 RNA5SP247-201ENST00000411181 105 ntBASIC0.3□□□□□ -2.36
CLRN3Q8NCR9 AC093729.1-201ENST00000513074 128 ntBASIC0.3□□□□□ -2.36
CLRN3Q8NCR9 RNU5B-6P-201ENST00000516765 68 ntBASIC0.3□□□□□ -2.36
CLRN3Q8NCR9 MIR3140-201ENST00000583685 90 ntBASIC0.3□□□□□ -2.36
CLRN3Q8NCR9 IGLL4P-201ENST00000614590 133 ntBASIC0.3□□□□□ -2.36
CLRN3Q8NCR9 RNU7-153P-201ENST00000516455 62 ntBASIC0.29□□□□□ -2.36
CLRN3Q8NCR9 RNU6-267P-201ENST00000516714 103 ntBASIC0.29□□□□□ -2.36
CLRN3Q8NCR9 MIR4677-201ENST00000584153 80 ntBASIC0.29□□□□□ -2.36
CLRN3Q8NCR9 uc_338.10-201ENST00000621872 182 ntBASIC0.29□□□□□ -2.36
CLRN3Q8NCR9 MIR499B-201ENST00000636498 73 ntBASIC0.29□□□□□ -2.36
CLRN3Q8NCR9 RNU6-497P-201ENST00000365316 104 ntBASIC0.28□□□□□ -2.36
CLRN3Q8NCR9 Y_RNA.593-201ENST00000410292 98 ntBASIC0.28□□□□□ -2.36
CLRN3Q8NCR9 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.28□□□□□ -2.36
CLRN3Q8NCR9 RNY1P1-201ENST00000364372 112 ntBASIC0.27□□□□□ -2.37
CLRN3Q8NCR9 Y_RNA.437-201ENST00000384113 113 ntBASIC0.27□□□□□ -2.37
CLRN3Q8NCR9 SNORA24B-201ENST00000384176 131 ntBASIC0.27□□□□□ -2.37
CLRN3Q8NCR9 RNU6-127P-201ENST00000390897 107 ntBASIC0.27□□□□□ -2.37
CLRN3Q8NCR9 RNU6-1177P-201ENST00000391058 104 ntBASIC0.27□□□□□ -2.37
CLRN3Q8NCR9 AC243829.6-201ENST00000612652 106 ntBASIC0.27□□□□□ -2.37
CLRN3Q8NCR9 AC243829.3-201ENST00000622177 108 ntBASIC0.27□□□□□ -2.37
CLRN3Q8NCR9 MIR548BB-201ENST00000626714 66 ntBASIC0.27□□□□□ -2.37
CLRN3Q8NCR9 SNORD114-4-201ENST00000363962 75 ntBASIC0.26□□□□□ -2.37
CLRN3Q8NCR9 Y_RNA.611-201ENST00000410682 108 ntBASIC0.26□□□□□ -2.37
CLRN3Q8NCR9 RNU6-782P-201ENST00000516852 104 ntBASIC0.26□□□□□ -2.37
CLRN3Q8NCR9 MIR892B-201ENST00000401279 77 ntBASIC0.25□□□□□ -2.37
CLRN3Q8NCR9 Y_RNA.43-201ENST00000362670 111 ntBASIC0.24□□□□□ -2.37
CLRN3Q8NCR9 RNA5SP499-201ENST00000363982 119 ntBASIC0.24□□□□□ -2.37
CLRN3Q8NCR9 RNU6-54P-201ENST00000365563 107 ntBASIC0.24□□□□□ -2.37
CLRN3Q8NCR9 MIR450A2-201ENST00000385022 100 ntBASIC0.24□□□□□ -2.37
CLRN3Q8NCR9 SNORA75.1-201ENST00000391130 148 ntBASIC0.24□□□□□ -2.37
CLRN3Q8NCR9 SNORD90-201ENST00000391145 111 ntBASIC0.24□□□□□ -2.37
CLRN3Q8NCR9 MIR936-201ENST00000401264 98 ntBASIC0.24□□□□□ -2.37
CLRN3Q8NCR9 AC084368.1-201ENST00000620935 65 ntBASIC0.24□□□□□ -2.37
CLRN3Q8NCR9 SNORA42.1-201ENST00000363515 137 ntBASIC0.23□□□□□ -2.37
CLRN3Q8NCR9 VTRNA1-3-201ENST00000365645 89 ntBASIC0.23□□□□□ -2.37
CLRN3Q8NCR9 MIR516B1-201ENST00000385211 90 ntBASIC0.23□□□□□ -2.37
CLRN3Q8NCR9 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.23□□□□□ -2.37
CLRN3Q8NCR9 AC097510.1-201ENST00000510945 133 ntBASIC0.23□□□□□ -2.37
CLRN3Q8NCR9 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.23□□□□□ -2.37
CLRN3Q8NCR9 MIR4711-201ENST00000578274 70 ntBASIC0.23□□□□□ -2.37
CLRN3Q8NCR9 MIR5093-201ENST00000583199 100 ntBASIC0.23□□□□□ -2.37
CLRN3Q8NCR9 AC022709.1-201ENST00000615967 87 ntBASIC0.23□□□□□ -2.37
CLRN3Q8NCR9 MIR610-201ENST00000385139 96 ntBASIC0.22□□□□□ -2.37
CLRN3Q8NCR9 AL450471.1-201ENST00000447509 127 ntBASIC0.22□□□□□ -2.37
CLRN3Q8NCR9 snoU13.18-201ENST00000459483 104 ntBASIC0.22□□□□□ -2.37
CLRN3Q8NCR9 AC006254.2-201ENST00000603259 279 ntBASIC0.22□□□□□ -2.37
CLRN3Q8NCR9 AC006160.2-201ENST00000637708 154 ntBASIC0.22□□□□□ -2.37
CLRN3Q8NCR9 RNU6-1255P-201ENST00000363434 112 ntBASIC0.21□□□□□ -2.38
CLRN3Q8NCR9 Y_RNA.264-201ENST00000364665 102 ntBASIC0.21□□□□□ -2.38
CLRN3Q8NCR9 SNORD114-29-201ENST00000364819 70 ntBASIC0.21□□□□□ -2.38
CLRN3Q8NCR9 Y_RNA.426-201ENST00000384068 113 ntBASIC0.21□□□□□ -2.38
CLRN3Q8NCR9 RNU6-154P-201ENST00000384306 106 ntBASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 164.7 ms