Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MIR7974-201ENST00000615835 79 ntBASIC1.38□□□□□ -2.19
DEPDC4Q8N2C3 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.38□□□□□ -2.19
DEPDC4Q8N2C3 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
DEPDC4Q8N2C3 SNORA8.1-201ENST00000384250 140 ntBASIC1.37□□□□□ -2.19
DEPDC4Q8N2C3 SNORA31.24-201ENST00000517232 57 ntBASIC1.37□□□□□ -2.19
DEPDC4Q8N2C3 AC011195.1-201ENST00000578177 177 ntBASIC1.37□□□□□ -2.19
DEPDC4Q8N2C3 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
DEPDC4Q8N2C3 RNU6-939P-201ENST00000384634 107 ntBASIC1.36□□□□□ -2.19
DEPDC4Q8N2C3 Y_RNA.540-201ENST00000384638 111 ntBASIC1.36□□□□□ -2.19
DEPDC4Q8N2C3 AC093423.1-201ENST00000440817 142 ntBASIC1.36□□□□□ -2.19
DEPDC4Q8N2C3 AC139453.2-201ENST00000487255 133 ntBASIC1.36□□□□□ -2.19
DEPDC4Q8N2C3 RNU6-42P-201ENST00000384165 107 ntBASIC1.35□□□□□ -2.19
DEPDC4Q8N2C3 MIR150-201ENST00000385048 84 ntBASIC1.35□□□□□ -2.19
DEPDC4Q8N2C3 MIR4661-201ENST00000582720 75 ntBASIC1.35□□□□□ -2.19
DEPDC4Q8N2C3 SNORD75.2-201ENST00000408784 58 ntBASIC1.34□□□□□ -2.19
DEPDC4Q8N2C3 RNU6-274P-201ENST00000459566 107 ntBASIC1.34□□□□□ -2.19
DEPDC4Q8N2C3 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.34□□□□□ -2.19
DEPDC4Q8N2C3 RNA5SP61-201ENST00000516453 100 ntBASIC1.34□□□□□ -2.19
DEPDC4Q8N2C3 MIR4452-201ENST00000583004 71 ntBASIC1.34□□□□□ -2.19
DEPDC4Q8N2C3 AL353765.1-201ENST00000605514 183 ntBASIC1.34□□□□□ -2.19
DEPDC4Q8N2C3 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.34□□□□□ -2.19
DEPDC4Q8N2C3 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.33□□□□□ -2.2
DEPDC4Q8N2C3 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.33□□□□□ -2.2
DEPDC4Q8N2C3 RNU6-495P-201ENST00000362995 107 ntBASIC1.33□□□□□ -2.2
DEPDC4Q8N2C3 SNORA8.2-201ENST00000384372 139 ntBASIC1.33□□□□□ -2.2
DEPDC4Q8N2C3 AL078603.1-201ENST00000603824 313 ntBASIC1.33□□□□□ -2.2
DEPDC4Q8N2C3 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
DEPDC4Q8N2C3 Y_RNA.258-201ENST00000364613 105 ntBASIC1.32□□□□□ -2.2
DEPDC4Q8N2C3 RNU6-382P-201ENST00000365181 106 ntBASIC1.32□□□□□ -2.2
DEPDC4Q8N2C3 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
DEPDC4Q8N2C3 RNA5SP220-201ENST00000516298 104 ntBASIC1.32□□□□□ -2.2
DEPDC4Q8N2C3 MIR3675-201ENST00000583661 73 ntBASIC1.32□□□□□ -2.2
DEPDC4Q8N2C3 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
DEPDC4Q8N2C3 RNU6-587P-201ENST00000391282 106 ntBASIC1.31□□□□□ -2.2
DEPDC4Q8N2C3 AC114801.3-201ENST00000510231 177 ntBASIC1.31□□□□□ -2.2
DEPDC4Q8N2C3 RNU6-687P-201ENST00000516443 89 ntBASIC1.31□□□□□ -2.2
DEPDC4Q8N2C3 RNU6-1015P-201ENST00000517121 99 ntBASIC1.31□□□□□ -2.2
DEPDC4Q8N2C3 AL162376.1-201ENST00000624117 175 ntBASIC1.31□□□□□ -2.2
DEPDC4Q8N2C3 MIR4773-1-201ENST00000637203 78 ntBASIC1.31□□□□□ -2.2
DEPDC4Q8N2C3 RNU6-716P-201ENST00000365621 103 ntBASIC1.3□□□□□ -2.2
DEPDC4Q8N2C3 MT-TY-201ENST00000387409 66 ntBASIC1.3□□□□□ -2.2
DEPDC4Q8N2C3 MIR758-201ENST00000390227 88 ntBASIC1.3□□□□□ -2.2
DEPDC4Q8N2C3 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.3□□□□□ -2.2
DEPDC4Q8N2C3 RNA5SP480-201ENST00000516840 109 ntBASIC1.3□□□□□ -2.2
DEPDC4Q8N2C3 RNA5SP102-201ENST00000516865 106 ntBASIC1.3□□□□□ -2.2
DEPDC4Q8N2C3 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.3□□□□□ -2.2
DEPDC4Q8N2C3 RNU6-330P-201ENST00000363015 107 ntBASIC1.29□□□□□ -2.2
DEPDC4Q8N2C3 RNU1-141P-201ENST00000364623 158 ntBASIC1.29□□□□□ -2.2
DEPDC4Q8N2C3 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.29□□□□□ -2.2
DEPDC4Q8N2C3 MIR154-201ENST00000385243 84 ntBASIC1.28□□□□□ -2.2
DEPDC4Q8N2C3 RNU6-788P-201ENST00000390967 104 ntBASIC1.28□□□□□ -2.2
DEPDC4Q8N2C3 MIR1323-201ENST00000408090 73 ntBASIC1.28□□□□□ -2.2
DEPDC4Q8N2C3 AL354695.1-201ENST00000427935 228 ntBASIC1.28□□□□□ -2.2
DEPDC4Q8N2C3 RNU6-634P-201ENST00000459134 106 ntBASIC1.28□□□□□ -2.2
DEPDC4Q8N2C3 RNA5SP94-201ENST00000516917 108 ntBASIC1.28□□□□□ -2.2
DEPDC4Q8N2C3 MIR4421-201ENST00000578133 69 ntBASIC1.28□□□□□ -2.2
DEPDC4Q8N2C3 MIR6734-201ENST00000621166 68 ntBASIC1.28□□□□□ -2.2
DEPDC4Q8N2C3 MIR664A-201ENST00000626086 82 ntBASIC1.28□□□□□ -2.2
DEPDC4Q8N2C3 RNU6-269P-201ENST00000391077 97 ntBASIC1.27□□□□□ -2.21
DEPDC4Q8N2C3 RNA5SP227-201ENST00000516184 113 ntBASIC1.27□□□□□ -2.21
DEPDC4Q8N2C3 MIR4460-201ENST00000577862 86 ntBASIC1.27□□□□□ -2.21
DEPDC4Q8N2C3 SNORA36.1-201ENST00000363424 132 ntBASIC1.26□□□□□ -2.21
DEPDC4Q8N2C3 RNU6-1241P-201ENST00000384536 107 ntBASIC1.26□□□□□ -2.21
DEPDC4Q8N2C3 RNA5SP268-201ENST00000516828 124 ntBASIC1.26□□□□□ -2.21
DEPDC4Q8N2C3 AC073869.9-201ENST00000641610 120 ntBASIC1.26□□□□□ -2.21
DEPDC4Q8N2C3 RNU6V-201ENST00000384105 107 ntBASIC1.25□□□□□ -2.21
DEPDC4Q8N2C3 SNORD114-22-201ENST00000365423 72 ntBASIC1.24□□□□□ -2.21
DEPDC4Q8N2C3 RNA5SP222-201ENST00000411039 105 ntBASIC1.24□□□□□ -2.21
DEPDC4Q8N2C3 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.24□□□□□ -2.21
DEPDC4Q8N2C3 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.23□□□□□ -2.21
DEPDC4Q8N2C3 SNORD114-26-201ENST00000363543 72 ntBASIC1.23□□□□□ -2.21
DEPDC4Q8N2C3 RNU6-539P-201ENST00000516665 103 ntBASIC1.23□□□□□ -2.21
DEPDC4Q8N2C3 MIR8053-201ENST00000613344 75 ntBASIC1.23□□□□□ -2.21
DEPDC4Q8N2C3 AC069503.3-201ENST00000618674 145 ntBASIC1.23□□□□□ -2.21
DEPDC4Q8N2C3 AL353770.2-201ENST00000620024 78 ntBASIC1.23□□□□□ -2.21
DEPDC4Q8N2C3 RNU6-590P-201ENST00000365039 107 ntBASIC1.22□□□□□ -2.21
DEPDC4Q8N2C3 RNU6-54P-201ENST00000365563 107 ntBASIC1.22□□□□□ -2.21
DEPDC4Q8N2C3 AL691482.2-201ENST00000457453 84 ntBASIC1.22□□□□□ -2.21
DEPDC4Q8N2C3 RNU6-1039P-201ENST00000383931 107 ntBASIC1.21□□□□□ -2.22
DEPDC4Q8N2C3 RNU6-649P-201ENST00000384463 107 ntBASIC1.21□□□□□ -2.22
DEPDC4Q8N2C3 MIR608-201ENST00000384820 100 ntBASIC1.21□□□□□ -2.22
DEPDC4Q8N2C3 AC068338.1-201ENST00000565567 176 ntBASIC1.21□□□□□ -2.22
DEPDC4Q8N2C3 MIR6078-201ENST00000611069 100 ntBASIC1.21□□□□□ -2.22
DEPDC4Q8N2C3 OR2A41P-201ENST00000473586 105 ntBASIC1.2□□□□□ -2.22
DEPDC4Q8N2C3 AC022709.1-201ENST00000615967 87 ntBASIC1.2□□□□□ -2.22
DEPDC4Q8N2C3 SNORD45.1-201ENST00000363181 77 ntBASIC1.19□□□□□ -2.22
DEPDC4Q8N2C3 SNORD114-4-201ENST00000363962 75 ntBASIC1.19□□□□□ -2.22
DEPDC4Q8N2C3 RNA5SP484-201ENST00000458857 111 ntBASIC1.19□□□□□ -2.22
DEPDC4Q8N2C3 MIR7107-201ENST00000611489 80 ntBASIC1.19□□□□□ -2.22
DEPDC4Q8N2C3 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.19□□□□□ -2.22
DEPDC4Q8N2C3 SNORD30.1-201ENST00000391309 70 ntBASIC1.18□□□□□ -2.22
DEPDC4Q8N2C3 NAMPTP3-201ENST00000569273 224 ntBASIC1.18□□□□□ -2.22
DEPDC4Q8N2C3 RNU6-895P-201ENST00000384125 103 ntBASIC1.17□□□□□ -2.22
DEPDC4Q8N2C3 MIR140-201ENST00000385282 100 ntBASIC1.17□□□□□ -2.22
DEPDC4Q8N2C3 MIR6779-201ENST00000617283 64 ntBASIC1.17□□□□□ -2.22
DEPDC4Q8N2C3 MIR6515-201ENST00000619843 57 ntBASIC1.17□□□□□ -2.22
DEPDC4Q8N2C3 RNU6-110P-201ENST00000384508 104 ntBASIC1.16□□□□□ -2.22
DEPDC4Q8N2C3 RNU6-540P-201ENST00000384622 101 ntBASIC1.16□□□□□ -2.22
DEPDC4Q8N2C3 SNORD42B-201ENST00000458893 67 ntBASIC1.16□□□□□ -2.22
DEPDC4Q8N2C3 MIR6509-201ENST00000614603 85 ntBASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 197.5 ms